Wall clock time and date at job start Mon Mar 30 2020 06:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86792 * 120.00512 * 2 1 4 4 H 1.48504 * 109.47684 * 270.00169 * 3 2 1 5 5 H 1.48498 * 109.47152 * 30.00480 * 3 2 1 6 6 H 1.48505 * 109.47621 * 150.00176 * 3 2 1 7 7 C 1.39903 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00541 * 195.82777 * 7 2 1 9 9 C 1.41261 * 120.00033 * 16.11043 * 7 2 1 10 10 C 1.40739 * 120.19915 * 26.20221 * 9 7 2 11 11 C 1.37885 * 119.73601 * 179.97438 * 10 9 7 12 12 O 1.35954 * 119.92496 * 180.02562 * 11 10 9 13 13 C 1.39505 * 120.14925 * 359.97438 * 11 10 9 14 14 F 1.35101 * 119.79579 * 179.97438 * 13 11 10 15 15 C 1.38724 * 120.40313 * 0.02776 * 13 11 10 16 16 C 1.37728 * 120.26080 * 359.73716 * 15 13 11 17 17 Br 1.89096 * 120.07606 * 180.26183 * 16 15 13 18 18 H 0.96995 * 119.99442 * 4.98743 * 1 2 3 19 19 H 1.07991 * 120.13024 * 359.95668 * 10 9 7 20 20 H 0.96705 * 113.99953 * 90.00010 * 12 11 10 21 21 H 1.08002 * 119.86530 * 179.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4404 2.6525 0.7001 6 1 3.5404 1.4400 0.7000 7 6 2.0081 -1.2116 -0.0005 8 1 3.0574 -1.2296 0.2545 9 6 1.3434 -2.4108 -0.3405 10 6 0.2127 -2.3805 -1.1781 11 6 -0.4285 -3.5568 -1.5043 12 8 -1.5207 -3.5321 -2.3134 13 6 0.0417 -4.7724 -1.0067 14 9 -0.5924 -5.9206 -1.3305 15 6 1.1556 -4.8092 -0.1807 16 6 1.8117 -3.6448 0.1519 17 35 3.3340 -3.7018 1.2723 18 1 -0.4849 0.8369 -0.0730 19 1 -0.1513 -1.4397 -1.5635 20 1 -1.3147 -3.6133 -3.2548 21 1 1.5118 -5.7550 0.2000 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307041695.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:34 Heat of formation + Delta-G solvation = -79.673823 kcal Electronic energy + Delta-G solvation = -12009.940532 eV Core-core repulsion = 9425.155253 eV Total energy + Delta-G solvation = -2584.785279 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.61104 -38.20981 -36.00277 -33.75524 -30.43700 -29.73323 -27.62255 -25.20823 -21.70789 -20.89859 -18.16952 -16.76225 -16.00171 -15.78682 -14.92300 -14.62932 -13.94393 -13.22632 -12.91818 -12.51568 -12.24230 -11.66382 -11.55610 -11.27096 -11.08757 -10.49481 -10.15773 -9.61952 -9.53514 -9.30681 -9.02258 -7.75085 -7.47054 -7.04908 -4.69578 2.21183 2.43734 2.93151 2.95410 2.97702 2.99954 3.74402 4.16680 4.93514 5.23179 5.62992 5.91593 6.51997 6.65173 6.84498 6.93303 7.05847 7.46746 7.53604 7.66246 8.07669 8.40104 8.47242 8.58924 9.85650 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.018121 B = 0.012760 C = 0.007649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.784889 B = 2193.844976 C = 3659.629851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.256 1.256 7 C -0.434 4.434 8 H 0.097 0.903 9 C 0.132 3.868 10 C -0.155 4.155 11 C 0.097 3.903 12 O -0.499 6.499 13 C -0.066 4.066 14 F -0.162 7.162 15 C -0.072 4.072 16 C -0.184 4.184 17 Br -0.090 7.090 18 H 0.289 0.711 19 H 0.139 0.861 20 H 0.375 0.625 21 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.181 -1.482 -0.825 4.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.180 1.180 7 C -0.462 4.462 8 H 0.115 0.885 9 C 0.127 3.873 10 C -0.175 4.175 11 C 0.052 3.948 12 O -0.308 6.308 13 C -0.088 4.088 14 F -0.142 7.142 15 C -0.093 4.093 16 C -0.264 4.264 17 Br -0.005 7.005 18 H 0.100 0.900 19 H 0.157 0.843 20 H 0.229 0.771 21 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.202 -1.310 0.210 4.407 hybrid contribution -0.012 0.463 -0.740 0.873 sum 4.190 -0.847 -0.530 4.307 Atomic orbital electron populations 1.69814 1.07750 1.30576 1.31709 1.26048 0.94821 1.01936 0.91860 0.86175 0.80674 0.79734 0.79674 1.18922 1.19972 1.17997 1.19872 0.98261 0.90442 1.37578 0.88492 1.17290 0.90543 0.91133 0.88330 1.21457 0.97823 0.96492 1.01740 1.18405 0.88570 0.91601 0.96204 1.84829 1.30106 1.95965 1.19852 1.17426 0.98983 0.80803 1.11559 1.91299 1.81999 1.48414 1.92471 1.20298 0.94241 0.97266 0.97454 1.21184 1.00094 0.95600 1.09526 1.96307 1.38954 1.98969 1.66300 0.90023 0.84325 0.77144 0.86716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.62 10.96 55.55 0.61 -18.01 14 2 C 0.07 1.71 5.16 -17.34 -0.09 1.62 14 3 Si 0.91 17.27 29.59 -169.99 -5.03 12.24 14 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 14 5 H -0.27 -5.12 7.11 56.52 0.40 -4.72 14 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 14 7 C -0.43 -10.53 8.43 -37.81 -0.32 -10.85 14 8 H 0.10 2.29 6.90 -52.49 -0.36 1.93 14 9 C 0.13 3.28 5.56 -106.80 -0.59 2.68 14 10 C -0.15 -3.79 8.60 -38.77 -0.33 -4.12 14 11 C 0.10 2.28 6.70 -39.24 -0.26 2.02 14 12 O -0.50 -10.44 13.35 -19.60 -0.26 -10.70 14 13 C -0.07 -1.54 7.33 -38.93 -0.29 -1.83 14 14 F -0.16 -3.67 17.10 2.25 0.04 -3.64 14 15 C -0.07 -1.61 9.73 -39.59 -0.39 -1.99 14 16 C -0.18 -4.28 6.28 -38.77 -0.24 -4.52 14 17 Br -0.09 -1.82 32.09 -68.01 -2.18 -4.00 14 18 H 0.29 6.27 8.30 -40.82 -0.34 5.93 14 19 H 0.14 3.45 6.22 -52.49 -0.33 3.12 14 20 H 0.38 5.76 9.06 45.56 0.41 6.17 14 21 H 0.11 2.32 8.06 -52.49 -0.42 1.90 14 LS Contribution 220.76 15.07 3.33 3.33 Total: -1.00 -26.53 220.76 -5.85 -32.38 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 0.17 Total: 5.40 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -2.51 Total: -17.00 kcal Atomic # 7 Polarization: -18.62 SS G_CDS: 0.61 Total: -18.01 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -0.26 Total: -10.70 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.04 Total: -3.64 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Atomic # 35 Polarization: -1.82 SS G_CDS: -2.18 Total: -4.00 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -26.53 -5.85 -32.38 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307041695.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.293 kcal (2) G-P(sol) polarization free energy of solvation -26.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds