Wall clock time and date at job start Mon Mar 30 2020 06:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86792 * 120.00512 * 2 1 4 4 H 1.48504 * 109.47684 * 270.00169 * 3 2 1 5 5 H 1.48498 * 109.47152 * 30.00480 * 3 2 1 6 6 H 1.48505 * 109.47621 * 150.00176 * 3 2 1 7 7 C 1.39903 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00541 * 195.82777 * 7 2 1 9 9 C 1.41261 * 120.00033 * 16.11043 * 7 2 1 10 10 C 1.40739 * 120.19915 * 26.20221 * 9 7 2 11 11 C 1.37885 * 119.73601 * 179.97438 * 10 9 7 12 12 O 1.35954 * 119.92496 * 180.02562 * 11 10 9 13 13 C 1.39505 * 120.14925 * 359.97438 * 11 10 9 14 14 F 1.35101 * 119.79579 * 179.97438 * 13 11 10 15 15 C 1.38724 * 120.40313 * 0.02776 * 13 11 10 16 16 C 1.37728 * 120.26080 * 359.73716 * 15 13 11 17 17 Br 1.89096 * 120.07606 * 180.26183 * 16 15 13 18 18 H 0.96995 * 119.99442 * 4.98743 * 1 2 3 19 19 H 1.07991 * 120.13024 * 359.95668 * 10 9 7 20 20 H 0.96705 * 113.99953 * 90.00010 * 12 11 10 21 21 H 1.08002 * 119.86530 * 179.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4404 2.6525 0.7001 6 1 3.5404 1.4400 0.7000 7 6 2.0081 -1.2116 -0.0005 8 1 3.0574 -1.2296 0.2545 9 6 1.3434 -2.4108 -0.3405 10 6 0.2127 -2.3805 -1.1781 11 6 -0.4285 -3.5568 -1.5043 12 8 -1.5207 -3.5321 -2.3134 13 6 0.0417 -4.7724 -1.0067 14 9 -0.5924 -5.9206 -1.3305 15 6 1.1556 -4.8092 -0.1807 16 6 1.8117 -3.6448 0.1519 17 35 3.3340 -3.7018 1.2723 18 1 -0.4849 0.8369 -0.0730 19 1 -0.1513 -1.4397 -1.5635 20 1 -1.3147 -3.6133 -3.2548 21 1 1.5118 -5.7550 0.2000 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307041695.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:34 Heat of formation + Delta-G solvation = -95.820345 kcal Electronic energy + Delta-G solvation = -12010.640697 eV Core-core repulsion = 9425.155253 eV Total energy + Delta-G solvation = -2585.485445 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.40184 -39.96930 -37.72548 -35.52016 -32.17212 -31.53461 -29.38848 -27.00999 -23.51082 -22.67739 -19.91971 -18.53996 -17.78200 -17.53388 -16.64946 -16.36539 -15.66164 -14.91879 -14.66594 -14.25422 -13.97811 -13.43435 -13.24910 -12.86734 -12.73863 -12.07244 -11.87958 -11.34329 -11.24063 -11.03441 -10.70634 -9.56203 -9.25128 -8.78571 -6.53008 0.43464 0.64512 1.18105 1.41648 1.47406 1.55401 2.17756 2.42700 3.23461 3.45465 3.84131 4.18126 4.72402 4.86891 5.08210 5.16668 5.28107 5.63692 5.72563 5.93319 6.29334 6.61971 6.67608 6.95483 8.15022 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.018121 B = 0.012760 C = 0.007649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.784889 B = 2193.844976 C = 3659.629851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.039 3.961 3 Si 0.983 3.017 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.254 1.254 7 C -0.455 4.455 8 H 0.099 0.901 9 C 0.110 3.890 10 C -0.176 4.176 11 C 0.101 3.899 12 O -0.506 6.506 13 C -0.082 4.082 14 F -0.160 7.160 15 C -0.068 4.068 16 C -0.199 4.199 17 Br -0.063 7.063 18 H 0.297 0.703 19 H 0.128 0.872 20 H 0.400 0.600 21 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.864 -1.051 -0.729 5.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.177 1.177 7 C -0.482 4.482 8 H 0.117 0.883 9 C 0.105 3.895 10 C -0.196 4.196 11 C 0.055 3.945 12 O -0.318 6.318 13 C -0.103 4.103 14 F -0.139 7.139 15 C -0.089 4.089 16 C -0.280 4.280 17 Br 0.022 6.978 18 H 0.108 0.892 19 H 0.146 0.854 20 H 0.258 0.742 21 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.882 -0.901 0.286 4.972 hybrid contribution -0.249 0.277 -0.771 0.857 sum 4.632 -0.624 -0.486 4.699 Atomic orbital electron populations 1.69849 1.09166 1.31971 1.31921 1.26863 0.95413 1.04847 0.90794 0.85157 0.79244 0.75404 0.79954 1.18128 1.19370 1.17724 1.20095 0.98478 0.91177 1.38426 0.88300 1.17617 0.91007 0.92138 0.88724 1.21403 0.98834 0.96466 1.02927 1.18443 0.88415 0.91405 0.96200 1.84743 1.29462 1.95912 1.21655 1.17568 0.99584 0.80890 1.12251 1.91298 1.82006 1.48133 1.92511 1.20529 0.93680 0.97975 0.96685 1.21420 1.01222 0.95403 1.09945 1.96292 1.37272 1.98914 1.65368 0.89196 0.85389 0.74239 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.59 10.96 21.82 0.24 -38.35 14 2 C 0.04 1.78 5.16 85.24 0.44 2.22 14 3 Si 0.98 34.42 29.59 68.60 2.03 36.44 14 4 H -0.26 -8.65 7.11 99.48 0.71 -7.94 14 5 H -0.27 -9.11 7.11 99.48 0.71 -8.41 14 6 H -0.25 -8.72 7.11 99.48 0.71 -8.01 14 7 C -0.45 -21.91 8.43 23.42 0.20 -21.71 14 8 H 0.10 4.59 6.90 -2.91 -0.02 4.57 14 9 C 0.11 5.46 5.56 -21.28 -0.12 5.34 14 10 C -0.18 -8.66 8.60 22.80 0.20 -8.46 14 11 C 0.10 4.68 6.70 22.49 0.15 4.83 14 12 O -0.51 -20.73 13.35 -93.04 -1.24 -21.97 14 13 C -0.08 -3.73 7.33 22.69 0.17 -3.56 14 14 F -0.16 -7.04 17.10 44.97 0.77 -6.27 14 15 C -0.07 -2.97 9.73 22.27 0.22 -2.76 14 16 C -0.20 -9.15 6.28 22.80 0.14 -9.00 14 17 Br -0.06 -2.46 32.09 -20.37 -0.65 -3.12 14 18 H 0.30 12.79 8.30 -92.71 -0.77 12.02 14 19 H 0.13 6.48 6.22 -2.92 -0.02 6.46 14 20 H 0.40 11.78 9.06 -74.05 -0.67 11.11 14 21 H 0.14 5.25 8.06 -2.91 -0.02 5.22 14 Total: -1.00 -54.48 220.76 3.15 -51.33 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.62 Total: 15.03 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 1.39 Total: -33.10 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.24 Total: -38.35 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -1.24 Total: -21.97 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 0.77 Total: -6.27 kcal Atomic # 14 Polarization: 34.42 SS G_CDS: 2.03 Total: 36.44 kcal Atomic # 35 Polarization: -2.46 SS G_CDS: -0.65 Total: -3.12 kcal Total: -54.48 3.15 -51.33 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307041695.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.489 kcal (2) G-P(sol) polarization free energy of solvation -54.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds