Wall clock time and date at job start Mon Mar 30 2020 06:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47046 * 304.99824 * 10 9 7 12 12 O 1.42903 * 109.47256 * 65.00203 * 10 9 7 13 13 C 1.50699 * 109.46610 * 185.00088 * 10 9 7 14 14 C 1.38253 * 119.99673 * 264.99401 * 13 10 9 15 15 C 1.38225 * 120.03436 * 179.97438 * 14 13 10 16 16 C 1.38247 * 120.03839 * 0.05009 * 15 14 13 17 17 C 1.38295 * 120.00424 * 359.95659 * 16 15 14 18 18 Cl 1.73593 * 120.02371 * 180.02562 * 17 16 15 19 19 C 1.38298 * 120.00285 * 84.73096 * 13 10 9 20 20 Cl 1.73606 * 120.01676 * 359.96994 * 19 13 10 21 21 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 24 24 H 0.96698 * 113.99763 * 59.99838 * 12 10 9 25 25 H 1.07996 * 119.98671 * 0.02562 * 14 13 10 26 26 H 1.08003 * 119.97964 * 180.02562 * 15 14 13 27 27 H 1.08007 * 119.99930 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9295 -3.5552 -0.8423 12 8 2.9878 -3.6541 1.2205 13 6 1.4960 -4.9636 -0.1244 14 6 1.1636 -5.6805 1.0101 15 6 0.4758 -6.8741 0.8974 16 6 0.1204 -7.3530 -0.3498 17 6 0.4522 -6.6372 -1.4857 18 17 0.0055 -7.2377 -3.0521 19 6 1.1360 -5.4382 -1.3725 20 17 1.5465 -4.5346 -2.7969 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5568 -0.8902 23 1 0.6248 -2.5571 0.8897 24 1 2.4417 -3.7456 2.0133 25 1 1.4408 -5.3073 1.9849 26 1 0.2162 -7.4332 1.7843 27 1 -0.4167 -8.2859 -0.4372 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307226870.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:10 Heat of formation + Delta-G solvation = -51.442853 kcal Electronic energy + Delta-G solvation = -14919.085443 eV Core-core repulsion = 12114.121507 eV Total energy + Delta-G solvation = -2804.963937 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.61723 -36.91742 -36.21715 -36.06470 -32.90805 -31.44545 -30.44842 -28.88834 -25.05313 -22.64545 -22.37029 -20.56210 -17.73931 -16.39963 -16.04617 -15.58094 -15.24686 -14.49728 -14.06902 -13.95353 -13.70194 -13.35968 -12.32654 -12.00104 -11.75997 -11.69475 -11.39908 -11.18856 -11.07374 -10.83261 -10.73889 -10.50621 -10.36356 -10.18021 -9.26431 -9.14186 -8.60853 -8.40758 -8.39956 -6.02269 -4.03931 1.07919 1.21241 1.98186 2.42829 3.32743 3.38935 3.43463 3.56562 4.44835 4.68543 4.90437 5.04793 5.20481 5.28601 5.35786 5.46702 5.70369 5.99340 6.06781 6.28973 6.47700 6.58163 6.70461 7.48759 7.55131 7.94297 8.27535 8.37211 9.01725 9.59680 11.09028 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.028217 B = 0.006260 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.077710 B = 4471.949277 C = 4980.898701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.061 0.939 9 C 0.004 3.996 10 C 0.141 3.859 11 H 0.107 0.893 12 O -0.551 6.551 13 C -0.075 4.075 14 C -0.103 4.103 15 C -0.103 4.103 16 C -0.116 4.116 17 C -0.029 4.029 18 Cl -0.060 7.060 19 C -0.028 4.028 20 Cl -0.040 7.040 21 H 0.261 0.739 22 H 0.033 0.967 23 H 0.020 0.980 24 H 0.365 0.635 25 H 0.137 0.863 26 H 0.135 0.865 27 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.171 -14.901 -0.566 14.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.549 4.549 8 H 0.079 0.921 9 C -0.033 4.033 10 C 0.082 3.918 11 H 0.125 0.875 12 O -0.355 6.355 13 C -0.076 4.076 14 C -0.121 4.121 15 C -0.121 4.121 16 C -0.135 4.135 17 C -0.056 4.056 18 Cl -0.031 7.031 19 C -0.055 4.055 20 Cl -0.010 7.010 21 H 0.070 0.930 22 H 0.051 0.949 23 H 0.038 0.962 24 H 0.211 0.789 25 H 0.154 0.846 26 H 0.153 0.847 27 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.179 -14.679 -1.257 14.733 hybrid contribution -0.257 0.861 0.041 0.899 sum -0.078 -13.818 -1.216 13.871 Atomic orbital electron populations 1.69966 1.06037 1.26685 1.50869 1.24993 0.94825 0.99252 0.95320 0.86566 0.79900 0.83286 0.78128 1.20680 1.21302 1.19747 1.21089 0.93274 0.90097 1.50392 0.92068 1.19731 0.93767 0.91309 0.98471 1.21323 0.94096 0.88882 0.87466 0.87549 1.86568 1.37364 1.96245 1.15365 1.21030 0.97369 0.98475 0.90769 1.21012 0.97987 0.94652 0.98469 1.21123 0.97829 0.96167 0.96968 1.20913 1.01565 1.00391 0.90607 1.20742 1.02257 0.94994 0.87652 1.98365 1.91335 1.87386 1.26015 1.20585 1.02349 0.93072 0.89530 1.98397 1.91851 1.73648 1.37129 0.92987 0.94909 0.96177 0.78854 0.84579 0.84716 0.84530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 13.29 55.43 0.74 -25.78 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 15 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 7 C -0.51 -14.17 8.88 -34.44 -0.31 -14.47 15 8 H 0.06 1.70 7.74 -52.48 -0.41 1.30 15 9 C 0.00 0.11 4.64 -27.88 -0.13 -0.02 15 10 C 0.14 2.88 2.66 -27.88 -0.07 2.81 15 11 H 0.11 2.27 7.14 -51.93 -0.37 1.90 15 12 O -0.55 -10.72 12.74 -35.23 -0.45 -11.17 15 13 C -0.08 -1.31 5.07 -104.59 -0.53 -1.84 15 14 C -0.10 -1.46 9.30 -39.58 -0.37 -1.83 15 15 C -0.10 -1.21 10.04 -39.58 -0.40 -1.61 15 16 C -0.12 -1.43 9.83 -39.56 -0.39 -1.82 15 17 C -0.03 -0.43 6.32 -39.47 -0.25 -0.68 15 18 Cl -0.06 -0.81 27.96 -51.86 -1.45 -2.26 15 19 C -0.03 -0.47 6.32 -39.47 -0.25 -0.72 15 20 Cl -0.04 -0.70 26.18 -51.86 -1.36 -2.06 15 21 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 22 H 0.03 0.87 7.91 -51.93 -0.41 0.46 15 23 H 0.02 0.52 8.14 -51.93 -0.42 0.10 15 24 H 0.36 5.80 7.32 45.56 0.33 6.13 15 25 H 0.14 1.64 6.41 -52.49 -0.34 1.31 15 26 H 0.13 1.14 8.06 -52.48 -0.42 0.72 15 27 H 0.14 1.31 8.06 -52.48 -0.42 0.88 15 LS Contribution 268.63 15.07 4.05 4.05 Total: -1.00 -30.53 268.63 -7.88 -38.41 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -1.59 Total: 0.81 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -2.79 Total: -18.66 kcal Atomic # 7 Polarization: -26.52 SS G_CDS: 0.74 Total: -25.78 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.45 Total: -11.17 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -2.81 Total: -4.32 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.53 -7.88 -38.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307226870.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.033 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds