Wall clock time and date at job start Mon Mar 30 2020 06:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47046 * 304.99824 * 10 9 7 12 12 O 1.42903 * 109.47256 * 65.00203 * 10 9 7 13 13 C 1.50699 * 109.46610 * 185.00088 * 10 9 7 14 14 C 1.38253 * 119.99673 * 264.99401 * 13 10 9 15 15 C 1.38225 * 120.03436 * 179.97438 * 14 13 10 16 16 C 1.38247 * 120.03839 * 0.05009 * 15 14 13 17 17 C 1.38295 * 120.00424 * 359.95659 * 16 15 14 18 18 Cl 1.73593 * 120.02371 * 180.02562 * 17 16 15 19 19 C 1.38298 * 120.00285 * 84.73096 * 13 10 9 20 20 Cl 1.73606 * 120.01676 * 359.96994 * 19 13 10 21 21 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 24 24 H 0.96698 * 113.99763 * 59.99838 * 12 10 9 25 25 H 1.07996 * 119.98671 * 0.02562 * 14 13 10 26 26 H 1.08003 * 119.97964 * 180.02562 * 15 14 13 27 27 H 1.08007 * 119.99930 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9295 -3.5552 -0.8423 12 8 2.9878 -3.6541 1.2205 13 6 1.4960 -4.9636 -0.1244 14 6 1.1636 -5.6805 1.0101 15 6 0.4758 -6.8741 0.8974 16 6 0.1204 -7.3530 -0.3498 17 6 0.4522 -6.6372 -1.4857 18 17 0.0055 -7.2377 -3.0521 19 6 1.1360 -5.4382 -1.3725 20 17 1.5465 -4.5346 -2.7969 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5568 -0.8902 23 1 0.6248 -2.5571 0.8897 24 1 2.4417 -3.7456 2.0133 25 1 1.4408 -5.3073 1.9849 26 1 0.2162 -7.4332 1.7843 27 1 -0.4167 -8.2859 -0.4372 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307226870.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:10 Heat of formation + Delta-G solvation = -70.711563 kcal Electronic energy + Delta-G solvation = -14919.920997 eV Core-core repulsion = 12114.121507 eV Total energy + Delta-G solvation = -2805.799491 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.82423 -38.27772 -37.49990 -37.28761 -34.98988 -32.84149 -31.55119 -30.65152 -26.81453 -24.03250 -23.74633 -22.06446 -19.14811 -18.21278 -17.32192 -17.07734 -16.67991 -16.19578 -15.38861 -15.19813 -15.00676 -14.91822 -14.27559 -13.23028 -13.17088 -12.99358 -12.83959 -12.77280 -12.62534 -12.38927 -12.31951 -12.17519 -11.89867 -11.77233 -11.21343 -10.80329 -10.57314 -9.73586 -9.70793 -8.19066 -6.27816 -0.02812 0.08081 0.83083 1.23924 1.40354 1.40659 1.52355 2.40352 2.47782 3.14206 3.46709 3.66285 3.89834 4.06143 4.25525 4.32985 4.42646 4.68116 4.77943 4.98183 5.16924 5.28633 5.41384 5.60485 5.66789 5.78038 6.21732 6.83129 6.90818 7.39928 8.92259 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.028217 B = 0.006260 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.077710 B = 4471.949277 C = 4980.898701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.014 3.986 10 C 0.157 3.843 11 H 0.089 0.911 12 O -0.558 6.558 13 C -0.103 4.103 14 C -0.106 4.106 15 C -0.087 4.087 16 C -0.103 4.103 17 C -0.041 4.041 18 Cl -0.054 7.054 19 C -0.048 4.048 20 Cl -0.062 7.062 21 H 0.263 0.737 22 H 0.007 0.993 23 H 0.003 0.997 24 H 0.380 0.620 25 H 0.156 0.844 26 H 0.181 0.819 27 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.270 -16.370 0.643 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.023 4.023 10 C 0.098 3.902 11 H 0.107 0.893 12 O -0.365 6.365 13 C -0.104 4.104 14 C -0.124 4.124 15 C -0.105 4.105 16 C -0.122 4.122 17 C -0.069 4.069 18 Cl -0.025 7.025 19 C -0.076 4.076 20 Cl -0.033 7.033 21 H 0.072 0.928 22 H 0.025 0.975 23 H 0.021 0.979 24 H 0.229 0.771 25 H 0.173 0.827 26 H 0.198 0.802 27 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.086 -16.160 -0.041 16.161 hybrid contribution -0.269 1.206 -0.295 1.270 sum -0.183 -14.954 -0.335 14.959 Atomic orbital electron populations 1.70078 1.07504 1.27634 1.51853 1.25824 0.95655 1.02834 0.94932 0.85552 0.78798 0.79030 0.78325 1.20159 1.20601 1.19009 1.21441 0.93233 0.91752 1.50034 0.92672 1.19532 0.93989 0.92514 0.96263 1.20766 0.92758 0.89294 0.87356 0.89339 1.86518 1.37837 1.96316 1.15812 1.20759 0.99309 0.98053 0.92290 1.21354 0.97654 0.95267 0.98115 1.21620 0.95496 0.94946 0.98399 1.21428 1.00043 1.00906 0.89792 1.20953 1.02345 0.94625 0.88944 1.98364 1.91193 1.87070 1.25836 1.20767 1.03903 0.94145 0.88773 1.98378 1.92177 1.74419 1.38298 0.92838 0.97458 0.97869 0.77094 0.82680 0.80183 0.81039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.99 13.29 21.45 0.28 -55.70 15 2 C 0.01 0.31 5.46 84.65 0.46 0.77 15 3 Si 0.96 44.78 29.54 68.60 2.03 46.81 15 4 H -0.28 -12.61 7.11 99.48 0.71 -11.91 15 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 15 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 15 7 C -0.53 -29.86 8.88 25.60 0.23 -29.63 15 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 15 9 C 0.01 0.73 4.64 29.85 0.14 0.87 15 10 C 0.16 6.55 2.66 29.85 0.08 6.63 15 11 H 0.09 3.94 7.14 -2.39 -0.02 3.92 15 12 O -0.56 -21.59 12.74 -148.98 -1.90 -23.49 15 13 C -0.10 -3.54 5.07 -19.85 -0.10 -3.64 15 14 C -0.11 -2.75 9.30 22.27 0.21 -2.54 15 15 C -0.09 -1.68 10.04 22.27 0.22 -1.46 15 16 C -0.10 -2.16 9.83 22.29 0.22 -1.94 15 17 C -0.04 -1.15 6.32 22.34 0.14 -1.01 15 18 Cl -0.05 -1.39 27.96 -2.72 -0.08 -1.46 15 19 C -0.05 -1.64 6.32 22.34 0.14 -1.50 15 20 Cl -0.06 -2.27 26.18 -2.72 -0.07 -2.34 15 21 H 0.26 14.93 8.31 -92.71 -0.77 14.16 15 22 H 0.01 0.40 7.91 -2.39 -0.02 0.38 15 23 H 0.00 0.16 8.14 -2.39 -0.02 0.14 15 24 H 0.38 11.75 7.32 -74.06 -0.54 11.21 15 25 H 0.16 3.31 6.41 -2.91 -0.02 3.29 15 26 H 0.18 1.90 8.06 -2.91 -0.02 1.88 15 27 H 0.17 2.39 8.06 -2.91 -0.02 2.37 15 Total: -1.00 -67.10 268.63 2.67 -64.43 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: 0.66 Total: 5.20 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 1.74 Total: -33.45 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.28 Total: -55.70 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -1.90 Total: -23.49 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 17 Polarization: -3.65 SS G_CDS: -0.15 Total: -3.80 kcal Total: -67.10 2.67 -64.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307226870.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.283 kcal (2) G-P(sol) polarization free energy of solvation -67.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds