Wall clock time and date at job start Mon Mar 30 2020 06:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00222 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08990 * 109.47170 * 54.99987 * 10 9 7 12 12 O 1.42905 * 109.46848 * 294.99765 * 10 9 7 13 13 C 1.50700 * 109.46738 * 175.00201 * 10 9 7 14 14 C 1.38250 * 120.00277 * 94.72527 * 13 10 9 15 15 C 1.38221 * 120.04131 * 179.76773 * 14 13 10 16 16 C 1.38249 * 120.03599 * 0.50066 * 15 14 13 17 17 C 1.38303 * 119.99865 * 359.75214 * 16 15 14 18 18 Cl 1.73608 * 120.01692 * 179.97438 * 17 16 15 19 19 C 1.38305 * 119.99962 * 274.99200 * 13 10 9 20 20 Cl 1.73598 * 120.01873 * 0.02562 * 19 13 10 21 21 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 23 23 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 24 24 H 0.96702 * 113.99974 * 300.00156 * 12 10 9 25 25 H 1.08004 * 119.98084 * 0.02562 * 14 13 10 26 26 H 1.07996 * 119.98307 * 180.22534 * 15 14 13 27 27 H 1.08002 * 120.00363 * 179.72325 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 1 3.5872 -3.1754 -0.8410 12 8 3.6429 -3.2757 1.2218 13 6 5.5234 -2.6384 -0.1222 14 6 6.3101 -2.7034 1.0128 15 6 7.6877 -2.7099 0.9005 16 6 8.2806 -2.6409 -0.3465 17 6 7.4952 -2.5706 -1.4827 18 17 8.2393 -2.4833 -3.0488 19 6 6.1149 -2.5694 -1.3705 20 17 5.1277 -2.4800 -2.7956 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6801 0.8912 23 1 3.8752 -0.6804 -0.8888 24 1 3.9948 -2.8487 2.0149 25 1 5.8479 -2.7533 1.9877 26 1 8.3013 -2.7643 1.7875 27 1 9.3572 -2.6415 -0.4334 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307226871.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:12 Heat of formation + Delta-G solvation = -47.139025 kcal Electronic energy + Delta-G solvation = -14982.931129 eV Core-core repulsion = 12178.153821 eV Total energy + Delta-G solvation = -2804.777309 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.74240 -37.03242 -36.33437 -36.17333 -32.85766 -31.59397 -30.55995 -29.44320 -25.23920 -22.75779 -22.15107 -20.55048 -17.85677 -16.71286 -16.16251 -15.83460 -15.36239 -14.35284 -14.18633 -13.92407 -13.83097 -13.67018 -12.46737 -12.08913 -11.96307 -11.81438 -11.61150 -11.34883 -11.25944 -10.94204 -10.83558 -10.57672 -10.46985 -9.82525 -9.41947 -9.23210 -8.72375 -8.58306 -8.56168 -6.05385 -4.03570 0.96422 1.08929 1.87861 2.31504 3.28258 3.35873 3.37323 3.44521 4.42165 4.55833 4.79098 4.93745 5.07831 5.17413 5.28691 5.36087 5.57542 5.87151 5.95840 6.17214 6.24790 6.42149 6.57551 6.95200 7.17264 7.69026 8.21454 8.50911 9.02932 9.55436 11.07864 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.024326 B = 0.007019 C = 0.006428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.741788 B = 3988.428363 C = 4355.071712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.872 3.128 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.510 4.510 8 H 0.079 0.921 9 C -0.033 4.033 10 C 0.152 3.848 11 H 0.112 0.888 12 O -0.544 6.544 13 C -0.080 4.080 14 C -0.103 4.103 15 C -0.102 4.102 16 C -0.114 4.114 17 C -0.029 4.029 18 Cl -0.058 7.058 19 C -0.029 4.029 20 Cl -0.038 7.038 21 H 0.263 0.737 22 H 0.020 0.980 23 H 0.025 0.975 24 H 0.364 0.636 25 H 0.138 0.862 26 H 0.136 0.864 27 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.818 -4.820 -0.540 18.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.700 3.300 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.548 4.548 8 H 0.097 0.903 9 C -0.070 4.070 10 C 0.093 3.907 11 H 0.130 0.870 12 O -0.349 6.349 13 C -0.082 4.082 14 C -0.121 4.121 15 C -0.120 4.120 16 C -0.133 4.133 17 C -0.057 4.057 18 Cl -0.029 7.029 19 C -0.057 4.057 20 Cl -0.009 7.009 21 H 0.073 0.927 22 H 0.038 0.962 23 H 0.044 0.956 24 H 0.211 0.789 25 H 0.156 0.844 26 H 0.154 0.846 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 17.316 -5.083 -1.233 18.088 hybrid contribution 0.748 1.445 0.025 1.627 sum 18.063 -3.638 -1.208 18.466 Atomic orbital electron populations 1.69900 1.06183 1.26807 1.50950 1.24964 0.94680 0.98817 0.94696 0.86901 0.80313 0.84137 0.78687 1.20142 1.21261 1.19197 1.20945 0.88407 0.94813 1.50662 0.90290 1.20214 0.98578 0.90819 0.97397 1.21048 0.84452 0.97101 0.88068 0.87016 1.86623 1.76961 1.56188 1.15126 1.21048 0.99932 0.96353 0.90842 1.21035 0.93361 0.99191 0.98493 1.21141 0.94790 0.99066 0.97034 1.20943 0.99998 1.01758 0.90592 1.20758 0.91053 1.06092 0.87768 1.98371 1.82013 1.96614 1.25914 1.20613 0.89731 1.05810 0.89546 1.98405 1.69268 1.96204 1.37006 0.92692 0.96202 0.95647 0.78880 0.84448 0.84609 0.84430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.96 55.43 0.77 -26.83 15 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 15 3 Si 0.87 21.50 27.47 -169.99 -4.67 16.84 15 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 15 6 H -0.27 -6.29 6.54 56.52 0.37 -5.92 15 7 C -0.51 -14.31 9.43 -34.44 -0.32 -14.63 15 8 H 0.08 2.43 7.99 -52.49 -0.42 2.02 15 9 C -0.03 -0.75 3.71 -27.88 -0.10 -0.86 15 10 C 0.15 2.99 2.66 -27.88 -0.07 2.92 15 11 H 0.11 2.34 7.12 -51.93 -0.37 1.97 15 12 O -0.54 -10.38 12.75 -35.23 -0.45 -10.83 15 13 C -0.08 -1.32 5.07 -104.59 -0.53 -1.85 15 14 C -0.10 -1.35 9.30 -39.58 -0.37 -1.72 15 15 C -0.10 -1.11 10.04 -39.58 -0.40 -1.51 15 16 C -0.11 -1.30 9.83 -39.55 -0.39 -1.69 15 17 C -0.03 -0.40 6.32 -39.47 -0.25 -0.65 15 18 Cl -0.06 -0.74 27.96 -51.86 -1.45 -2.19 15 19 C -0.03 -0.47 6.32 -39.47 -0.25 -0.72 15 20 Cl -0.04 -0.64 26.21 -51.86 -1.36 -2.00 15 21 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 22 H 0.02 0.45 7.20 -51.93 -0.37 0.08 15 23 H 0.03 0.59 7.37 -51.93 -0.38 0.21 15 24 H 0.36 5.52 7.32 45.56 0.33 5.85 15 25 H 0.14 1.52 6.41 -52.48 -0.34 1.18 15 26 H 0.14 1.03 8.06 -52.49 -0.42 0.61 15 27 H 0.14 1.20 8.06 -52.49 -0.42 0.78 15 LS Contribution 265.10 15.07 3.99 3.99 Total: -1.00 -31.27 265.10 -7.50 -38.77 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -1.56 Total: 1.06 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -2.78 Total: -18.80 kcal Atomic # 7 Polarization: -27.60 SS G_CDS: 0.77 Total: -26.83 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.45 Total: -10.83 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -2.81 Total: -4.20 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.27 -7.50 -38.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307226871.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.368 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds