Wall clock time and date at job start Mon Mar 30 2020 06:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00222 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08990 * 109.47170 * 54.99987 * 10 9 7 12 12 O 1.42905 * 109.46848 * 294.99765 * 10 9 7 13 13 C 1.50700 * 109.46738 * 175.00201 * 10 9 7 14 14 C 1.38250 * 120.00277 * 94.72527 * 13 10 9 15 15 C 1.38221 * 120.04131 * 179.76773 * 14 13 10 16 16 C 1.38249 * 120.03599 * 0.50066 * 15 14 13 17 17 C 1.38303 * 119.99865 * 359.75214 * 16 15 14 18 18 Cl 1.73608 * 120.01692 * 179.97438 * 17 16 15 19 19 C 1.38305 * 119.99962 * 274.99200 * 13 10 9 20 20 Cl 1.73598 * 120.01873 * 0.02562 * 19 13 10 21 21 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 23 23 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 24 24 H 0.96702 * 113.99974 * 300.00156 * 12 10 9 25 25 H 1.08004 * 119.98084 * 0.02562 * 14 13 10 26 26 H 1.07996 * 119.98307 * 180.22534 * 15 14 13 27 27 H 1.08002 * 120.00363 * 179.72325 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 1 3.5872 -3.1754 -0.8410 12 8 3.6429 -3.2757 1.2218 13 6 5.5234 -2.6384 -0.1222 14 6 6.3101 -2.7034 1.0128 15 6 7.6877 -2.7099 0.9005 16 6 8.2806 -2.6409 -0.3465 17 6 7.4952 -2.5706 -1.4827 18 17 8.2393 -2.4833 -3.0488 19 6 6.1149 -2.5694 -1.3705 20 17 5.1277 -2.4800 -2.7956 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6801 0.8912 23 1 3.8752 -0.6804 -0.8888 24 1 3.9948 -2.8487 2.0149 25 1 5.8479 -2.7533 1.9877 26 1 8.3013 -2.7643 1.7875 27 1 9.3572 -2.6415 -0.4334 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307226871.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:12 Heat of formation + Delta-G solvation = -68.030067 kcal Electronic energy + Delta-G solvation = -14983.837033 eV Core-core repulsion = 12178.153821 eV Total energy + Delta-G solvation = -2805.683212 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.86537 -38.32490 -37.53002 -37.30728 -34.94829 -32.99442 -31.56825 -31.12381 -26.87870 -23.76929 -23.71505 -22.05843 -19.30977 -18.49890 -17.35500 -17.18130 -16.58929 -16.09280 -15.46591 -15.34223 -15.03494 -15.02725 -14.44885 -13.46090 -13.21478 -13.07900 -12.87740 -12.79691 -12.64364 -12.38638 -12.25073 -12.07372 -11.86398 -11.72895 -11.28261 -10.90681 -10.77592 -9.77127 -9.73889 -8.27729 -6.31173 -0.04664 0.05180 0.81550 1.22193 1.34463 1.35165 1.45819 2.34583 2.44107 3.06122 3.41604 3.62428 3.88712 4.02030 4.23054 4.30282 4.37222 4.57221 4.70907 4.95723 5.06301 5.12291 5.27106 5.46731 5.59699 5.65547 6.28239 6.75853 6.89834 7.31549 8.89387 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.024326 B = 0.007019 C = 0.006428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.741788 B = 3988.428363 C = 4355.071712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.008 3.992 3 Si 0.942 3.058 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.243 1.243 7 C -0.515 4.515 8 H 0.032 0.968 9 C -0.026 4.026 10 C 0.163 3.837 11 H 0.086 0.914 12 O -0.559 6.559 13 C -0.104 4.104 14 C -0.103 4.103 15 C -0.085 4.085 16 C -0.101 4.101 17 C -0.041 4.041 18 Cl -0.054 7.054 19 C -0.048 4.048 20 Cl -0.062 7.062 21 H 0.266 0.734 22 H 0.032 0.968 23 H 0.024 0.976 24 H 0.382 0.618 25 H 0.158 0.842 26 H 0.181 0.819 27 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.430 -4.073 0.823 21.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.189 4.189 3 Si 0.765 3.235 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.166 1.166 7 C -0.553 4.553 8 H 0.050 0.950 9 C -0.063 4.063 10 C 0.104 3.896 11 H 0.103 0.897 12 O -0.366 6.366 13 C -0.105 4.105 14 C -0.121 4.121 15 C -0.103 4.103 16 C -0.119 4.119 17 C -0.068 4.068 18 Cl -0.025 7.025 19 C -0.076 4.076 20 Cl -0.033 7.033 21 H 0.075 0.925 22 H 0.050 0.950 23 H 0.042 0.958 24 H 0.231 0.769 25 H 0.176 0.824 26 H 0.198 0.802 27 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 20.953 -4.349 0.140 21.400 hybrid contribution -0.337 1.097 -0.362 1.203 sum 20.616 -3.252 -0.222 20.872 Atomic orbital electron populations 1.70064 1.08249 1.28001 1.52793 1.25912 0.95506 1.03084 0.94356 0.85792 0.79765 0.78835 0.79101 1.19687 1.20789 1.16606 1.21204 0.91246 0.93028 1.49846 0.94988 1.20090 0.94973 0.93703 0.97552 1.20567 0.87172 0.94323 0.87561 0.89657 1.86580 1.77673 1.56488 1.15837 1.20692 0.97739 0.99770 0.92336 1.21374 0.94465 0.98123 0.98145 1.21628 0.93971 0.96323 0.98384 1.21445 1.01523 0.99175 0.89800 1.20954 0.90401 1.06496 0.88957 1.98373 1.81616 1.96605 1.25890 1.20773 0.90586 1.07543 0.88698 1.98390 1.70158 1.96456 1.38338 0.92547 0.94993 0.95760 0.76897 0.82419 0.80150 0.81081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.18 13.96 21.45 0.30 -59.88 15 2 C 0.01 0.48 5.47 84.65 0.46 0.94 15 3 Si 0.94 44.17 27.47 68.60 1.88 46.05 15 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 15 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 15 6 H -0.24 -10.34 6.54 99.48 0.65 -9.69 15 7 C -0.52 -29.79 9.43 25.60 0.24 -29.55 15 8 H 0.03 2.09 7.99 -2.91 -0.02 2.07 15 9 C -0.03 -1.18 3.71 29.85 0.11 -1.07 15 10 C 0.16 6.45 2.66 29.85 0.08 6.53 15 11 H 0.09 3.76 7.12 -2.39 -0.02 3.74 15 12 O -0.56 -21.24 12.75 -148.98 -1.90 -23.14 15 13 C -0.10 -3.25 5.07 -19.85 -0.10 -3.35 15 14 C -0.10 -2.34 9.30 22.27 0.21 -2.13 15 15 C -0.09 -1.40 10.04 22.27 0.22 -1.17 15 16 C -0.10 -1.83 9.83 22.29 0.22 -1.61 15 17 C -0.04 -1.02 6.32 22.34 0.14 -0.88 15 18 Cl -0.05 -1.27 27.96 -2.72 -0.08 -1.35 15 19 C -0.05 -1.50 6.32 22.34 0.14 -1.36 15 20 Cl -0.06 -2.15 26.21 -2.72 -0.07 -2.22 15 21 H 0.27 15.69 8.31 -92.71 -0.77 14.92 15 22 H 0.03 1.39 7.20 -2.39 -0.02 1.37 15 23 H 0.02 1.12 7.37 -2.39 -0.02 1.10 15 24 H 0.38 11.00 7.32 -74.06 -0.54 10.46 15 25 H 0.16 2.83 6.41 -2.91 -0.02 2.81 15 26 H 0.18 1.42 8.06 -2.91 -0.02 1.39 15 27 H 0.17 1.98 8.06 -2.91 -0.02 1.95 15 Total: -1.00 -70.58 265.10 2.47 -68.11 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 0.61 Total: 6.10 kcal Atomic # 6 Polarization: -35.39 SS G_CDS: 1.73 Total: -33.67 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.30 Total: -59.88 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -1.90 Total: -23.14 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Atomic # 17 Polarization: -3.42 SS G_CDS: -0.15 Total: -3.57 kcal Total: -70.58 2.47 -68.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307226871.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.077 kcal (2) G-P(sol) polarization free energy of solvation -70.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds