Wall clock time and date at job start Mon Mar 30 2020 06:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30843 * 1 3 3 Si 1.86808 * 120.00086 * 2 1 4 4 H 1.48499 * 109.47009 * 239.99781 * 3 2 1 5 5 H 1.48497 * 109.46956 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47055 * 119.99901 * 3 2 1 7 7 C 1.39924 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00428 * 197.78254 * 7 2 1 9 9 C 1.41317 * 119.99625 * 17.78402 * 7 2 1 10 10 C 1.40781 * 120.23264 * 24.56382 * 9 7 2 11 11 C 1.37620 * 119.86494 * 179.97438 * 10 9 7 12 12 Br 1.89094 * 119.82749 * 180.02562 * 11 10 9 13 13 C 1.38785 * 120.34554 * 359.97438 * 11 10 9 14 14 C 1.38877 * 120.47750 * 0.02562 * 13 11 10 15 15 O 1.35968 * 119.93810 * 179.97438 * 14 13 11 16 16 C 1.38455 * 120.12570 * 0.25897 * 14 13 11 17 17 F 1.35106 * 120.17895 * 179.72036 * 16 14 13 18 18 H 0.97002 * 120.00297 * 0.02562 * 1 2 3 19 19 H 1.07996 * 120.07156 * 0.02990 * 10 9 7 20 20 H 1.07998 * 119.76049 * 180.02562 * 13 11 10 21 21 H 0.96707 * 113.99669 * 90.00230 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0963 1.6964 -1.2125 5 1 1.2775 2.7465 -0.0006 6 1 3.0962 1.6964 1.2125 7 6 2.0081 -1.2117 0.0005 8 1 3.0494 -1.2340 0.2862 9 6 1.3522 -2.4065 -0.3727 10 6 0.2218 -2.3625 -1.2107 11 6 -0.4109 -3.5307 -1.5699 12 35 -1.9287 -3.4705 -2.6960 13 6 0.0600 -4.7529 -1.1108 14 6 1.1739 -4.8129 -0.2836 15 8 1.6255 -6.0161 0.1602 16 6 1.8219 -3.6493 0.0948 17 9 2.9023 -3.7060 0.9041 18 1 -0.4851 0.8400 -0.0004 19 1 -0.1477 -1.4141 -1.5716 20 1 -0.4435 -5.6638 -1.3989 21 1 2.2792 -6.4294 -0.4204 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307531684.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:23 Heat of formation + Delta-G solvation = -80.031294 kcal Electronic energy + Delta-G solvation = -12026.714716 eV Core-core repulsion = 9441.913936 eV Total energy + Delta-G solvation = -2584.800780 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.39278 -38.20948 -36.10419 -33.76076 -30.95134 -29.32250 -27.54635 -25.66543 -21.65623 -20.81677 -18.12736 -16.59673 -16.17613 -15.76825 -14.87877 -14.62284 -13.85531 -13.30801 -13.08473 -12.43649 -11.93317 -11.87397 -11.50853 -11.26561 -10.88513 -10.61878 -10.33137 -9.77798 -9.57568 -9.45324 -9.28612 -7.78602 -7.42204 -7.06172 -4.68710 2.23054 2.35923 2.55359 2.94569 2.96409 3.00126 3.73939 4.16609 4.98251 5.12527 5.64700 6.19987 6.45860 6.60570 6.84228 6.92796 7.21364 7.37796 7.49888 7.63797 8.11240 8.28177 8.46753 8.57222 9.86490 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.019729 B = 0.010589 C = 0.007033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.900521 B = 2643.685164 C = 3980.547123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.075 3.925 3 Si 0.919 3.081 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.441 4.441 8 H 0.089 0.911 9 C 0.095 3.905 10 C -0.122 4.122 11 C -0.051 4.051 12 Br -0.095 7.095 13 C -0.225 4.225 14 C 0.103 3.897 15 O -0.499 6.499 16 C -0.042 4.042 17 F -0.152 7.152 18 H 0.290 0.710 19 H 0.140 0.860 20 H 0.114 0.886 21 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.581 -2.314 -4.927 5.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.146 4.146 3 Si 0.742 3.258 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.469 4.469 8 H 0.107 0.893 9 C 0.091 3.909 10 C -0.144 4.144 11 C -0.130 4.130 12 Br -0.011 7.011 13 C -0.247 4.247 14 C 0.057 3.943 15 O -0.308 6.308 16 C -0.064 4.064 17 F -0.131 7.131 18 H 0.101 0.899 19 H 0.158 0.842 20 H 0.132 0.868 21 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -2.719 -2.016 -4.821 5.891 hybrid contribution 1.076 0.533 0.082 1.204 sum -1.643 -1.484 -4.739 5.230 Atomic orbital electron populations 1.69776 1.07747 1.30457 1.32002 1.26008 0.94869 1.01885 0.91851 0.86170 0.80108 0.79119 0.80412 1.18396 1.19928 1.18591 1.19541 0.98624 0.90604 1.38145 0.89262 1.17438 0.91960 0.90922 0.90606 1.21229 0.97611 0.96325 0.99196 1.21185 0.94689 0.96118 1.01048 1.96447 1.39726 1.99294 1.65589 1.20279 1.01513 0.96061 1.06802 1.17959 0.95267 0.83140 0.97920 1.84809 1.62222 1.32774 1.50959 1.18166 0.91679 0.94119 1.02386 1.91288 1.53123 1.97189 1.71513 0.89913 0.84246 0.86806 0.76990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.82 10.96 55.55 0.61 -18.21 14 2 C 0.07 1.76 5.14 -17.34 -0.09 1.68 14 3 Si 0.92 17.59 29.60 -169.99 -5.03 12.56 14 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 14 5 H -0.27 -5.08 7.11 56.52 0.40 -4.68 14 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 14 7 C -0.44 -11.24 8.78 -37.78 -0.33 -11.57 14 8 H 0.09 2.23 7.74 -52.49 -0.41 1.82 14 9 C 0.10 2.47 5.58 -106.78 -0.60 1.87 14 10 C -0.12 -3.01 8.42 -38.85 -0.33 -3.33 14 11 C -0.05 -1.15 6.21 -39.60 -0.25 -1.40 14 12 Br -0.10 -1.80 33.68 -68.01 -2.29 -4.09 14 13 C -0.22 -4.92 9.72 -39.14 -0.38 -5.30 14 14 C 0.10 2.35 6.70 -39.27 -0.26 2.08 14 15 O -0.50 -9.97 13.36 -19.64 -0.26 -10.23 14 16 C -0.04 -1.06 7.31 -38.51 -0.28 -1.34 14 17 F -0.15 -3.80 16.55 2.25 0.04 -3.77 14 18 H 0.29 6.33 8.30 -40.82 -0.34 6.00 14 19 H 0.14 3.49 6.16 -52.49 -0.32 3.16 14 20 H 0.11 2.26 8.06 -52.49 -0.42 1.84 14 21 H 0.38 5.45 9.06 45.56 0.41 5.87 14 LS Contribution 222.64 15.07 3.36 3.36 Total: -1.00 -26.83 222.64 -5.97 -32.80 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: 0.13 Total: 4.90 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -2.51 Total: -17.32 kcal Atomic # 7 Polarization: -18.82 SS G_CDS: 0.61 Total: -18.21 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -0.26 Total: -10.23 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.04 Total: -3.77 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Atomic # 35 Polarization: -1.80 SS G_CDS: -2.29 Total: -4.09 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -26.83 -5.97 -32.80 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307531684.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.228 kcal (2) G-P(sol) polarization free energy of solvation -26.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds