Wall clock time and date at job start Mon Mar 30 2020 06:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46743 * 2 1 4 4 C 1.50702 * 109.47052 * 240.00185 * 2 1 3 5 5 H 1.07998 * 119.99373 * 240.00214 * 4 2 1 6 6 C 1.37877 * 120.00141 * 59.99983 * 4 2 1 7 7 N 1.31522 * 120.00025 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00015 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47273 * 89.99408 * 8 6 4 10 10 H 1.48500 * 109.47277 * 209.99929 * 8 6 4 11 11 H 1.48502 * 109.46830 * 329.99798 * 8 6 4 12 12 N 1.46897 * 109.47067 * 119.99852 * 2 1 3 13 13 C 1.46894 * 111.00012 * 58.95662 * 12 2 1 14 14 C 1.46903 * 111.00161 * 294.99759 * 12 2 1 15 15 C 1.52994 * 109.47074 * 190.00060 * 14 12 2 16 16 C 1.50704 * 109.47031 * 180.02562 * 15 14 12 17 17 C 1.32559 * 120.00253 * 127.48276 * 16 15 14 18 18 C 1.47818 * 120.00125 * 7.59407 * 17 16 15 19 19 C 1.39530 * 120.13908 * 218.61111 * 18 17 16 20 20 C 1.37980 * 119.85278 * 179.66948 * 19 18 17 21 21 C 1.38348 * 120.13721 * 0.62994 * 20 19 18 22 22 C 1.38342 * 120.28832 * 359.67272 * 21 20 19 23 23 C 1.37969 * 120.14102 * 359.97438 * 22 21 20 24 24 H 1.08996 * 109.46895 * 59.99946 * 1 2 3 25 25 H 1.08994 * 109.46967 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46932 * 300.00562 * 1 2 3 27 27 H 0.96992 * 119.99670 * 180.02562 * 7 6 4 28 28 H 1.08992 * 109.47555 * 59.99767 * 13 12 2 29 29 H 1.09000 * 109.47198 * 180.02562 * 13 12 2 30 30 H 1.09000 * 109.47116 * 299.99947 * 13 12 2 31 31 H 1.09001 * 109.46995 * 310.00426 * 14 12 2 32 32 H 1.09002 * 109.46563 * 69.99876 * 14 12 2 33 33 H 1.09001 * 109.47508 * 300.00051 * 15 14 12 34 34 H 1.09003 * 109.47054 * 60.00443 * 15 14 12 35 35 H 1.08005 * 119.99611 * 307.47998 * 16 15 14 36 36 H 1.08001 * 120.00081 * 187.58554 * 17 16 15 37 37 H 1.07995 * 120.07535 * 359.97438 * 19 18 17 38 38 H 1.07999 * 119.92891 * 180.31737 * 20 19 18 39 39 H 1.08004 * 119.84871 * 179.69126 * 21 20 19 40 40 H 1.08000 * 119.92673 * 180.02562 * 22 21 20 41 41 H 1.08004 * 120.06704 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.3428 -2.1617 -4.4119 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 7 2.0197 -0.6924 1.1994 13 6 1.5284 -2.0760 1.2460 14 6 1.6488 0.0393 2.4181 15 6 2.3790 -0.5661 3.6185 16 6 1.9980 0.1841 4.8688 17 6 1.5518 -0.4762 5.9281 18 6 1.5854 -1.9539 5.9460 19 6 0.5332 -2.6718 6.5155 20 6 0.5674 -4.0511 6.5229 21 6 1.6481 -4.7220 5.9788 22 6 2.6974 -4.0160 5.4182 23 6 2.6719 -2.6367 5.3980 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7082 1.1609 -3.4844 28 1 1.8763 -2.6150 0.3648 29 1 1.9054 -2.5654 2.1440 30 1 0.4386 -2.0742 1.2639 31 1 1.9298 1.0871 2.3124 32 1 0.5723 -0.0344 2.5725 33 1 2.0979 -1.6140 3.7242 34 1 3.4555 -0.4924 3.4640 35 1 2.0884 1.2599 4.9017 36 1 1.1640 0.0654 6.7782 37 1 -0.3085 -2.1490 6.9453 38 1 -0.2488 -4.6080 6.9589 39 1 1.6723 -5.8017 5.9916 40 1 3.5379 -4.5457 4.9948 41 1 3.4916 -2.0867 4.9597 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323677442.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:04 Heat of formation + Delta-G solvation = 45.612529 kcal Electronic energy + Delta-G solvation = -19033.747918 eV Core-core repulsion = 16299.934249 eV Total energy + Delta-G solvation = -2733.813669 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.40872 -37.42963 -35.16957 -32.76101 -31.14458 -30.54787 -28.92771 -27.62699 -25.37048 -25.07631 -22.90716 -22.49564 -21.34295 -19.15333 -18.97260 -16.50277 -16.09195 -15.68659 -15.34730 -14.89221 -14.67852 -14.16322 -13.86653 -13.53777 -13.28007 -13.10604 -12.71207 -12.57278 -11.92549 -11.78298 -11.68916 -11.23375 -11.05770 -11.02370 -10.92403 -10.69317 -10.62346 -10.44396 -10.22590 -9.98666 -9.69479 -9.58144 -8.87216 -8.81824 -8.35964 -8.15878 -7.07760 -5.97823 -4.01310 1.06650 1.40516 2.43343 3.32651 3.39128 3.43368 3.84945 4.44000 4.76209 4.88258 4.94495 5.00373 5.09698 5.33399 5.35579 5.43704 5.49775 5.55960 5.74582 5.85859 5.96852 6.05484 6.12282 6.23412 6.31582 6.38220 6.45802 6.50110 6.56225 6.60235 6.69987 6.73329 6.87824 6.88983 6.96832 7.01977 7.17968 7.54737 7.76399 7.87833 8.17199 8.43499 8.65727 9.04860 9.63589 11.09410 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.028891 B = 0.004288 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.926972 B = 6528.774744 C = 6998.136769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.210 3.790 3 H 0.038 0.962 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.535 5.535 13 C 0.034 3.966 14 C 0.061 3.939 15 C -0.108 4.108 16 C -0.118 4.118 17 C -0.148 4.148 18 C -0.048 4.048 19 C -0.115 4.115 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.107 4.107 24 H 0.087 0.913 25 H 0.029 0.971 26 H 0.007 0.993 27 H 0.259 0.741 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.016 0.984 31 H 0.064 0.936 32 H 0.024 0.976 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.507 -6.089 17.507 18.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.104 3.896 3 H 0.056 0.944 4 C -0.537 4.537 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.259 5.259 13 C -0.114 4.114 14 C -0.068 4.068 15 C -0.145 4.145 16 C -0.137 4.137 17 C -0.166 4.166 18 C -0.048 4.048 19 C -0.133 4.133 20 C -0.142 4.142 21 C -0.143 4.143 22 C -0.139 4.139 23 C -0.124 4.124 24 H 0.106 0.894 25 H 0.048 0.952 26 H 0.026 0.974 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.953 -5.985 17.319 18.349 hybrid contribution -0.789 -0.301 -0.849 1.198 sum 0.164 -6.287 16.470 17.630 Atomic orbital electron populations 1.22393 1.00983 0.99288 1.00424 1.19309 0.89692 0.94525 0.86111 0.94393 1.21135 1.30438 1.12389 0.89720 0.91968 1.24932 0.95294 0.95133 0.98985 1.69892 1.37173 1.23115 1.23312 0.86534 0.79236 0.79276 0.82577 1.20864 1.21315 1.19848 1.62339 1.59458 1.01947 1.02123 1.22235 0.97057 0.91392 1.00721 1.21934 0.96575 0.98026 0.90275 1.21228 1.01192 1.00202 0.91855 1.23437 0.96066 0.99815 0.94337 1.21571 1.03783 0.91774 0.99466 1.19082 0.94424 0.93381 0.97891 1.21242 0.98039 0.94048 0.99961 1.21048 0.98397 0.94371 1.00364 1.21169 0.94361 0.99743 0.99030 1.21112 0.98853 0.94223 0.99715 1.21491 0.98257 0.94318 0.98378 0.89433 0.95160 0.97445 0.93071 0.91081 0.93938 0.96586 0.91785 0.95775 0.89978 0.90363 0.86678 0.86506 0.86214 0.86320 0.86371 0.85998 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 8.28 37.16 0.31 -3.96 16 2 C 0.21 5.38 2.34 -68.86 -0.16 5.21 16 3 H 0.04 1.07 8.03 -51.93 -0.42 0.65 16 4 C -0.50 -13.78 7.94 -34.44 -0.27 -14.06 16 5 H 0.06 1.72 6.75 -52.49 -0.35 1.37 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.75 11.32 55.43 0.63 -25.12 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.54 -11.72 4.74 -236.29 -1.12 -12.84 16 13 C 0.03 0.70 8.70 60.06 0.52 1.23 16 14 C 0.06 1.12 4.38 -3.83 -0.02 1.11 16 15 C -0.11 -1.62 3.91 -27.88 -0.11 -1.73 16 16 C -0.12 -1.50 9.46 -36.21 -0.34 -1.84 16 17 C -0.15 -1.76 9.79 -37.57 -0.37 -2.13 16 18 C -0.05 -0.60 5.13 -105.02 -0.54 -1.14 16 19 C -0.11 -1.33 9.79 -39.19 -0.38 -1.71 16 20 C -0.12 -1.32 10.03 -39.64 -0.40 -1.72 16 21 C -0.12 -1.34 10.04 -39.50 -0.40 -1.73 16 22 C -0.12 -1.38 10.03 -39.64 -0.40 -1.78 16 23 C -0.11 -1.33 7.32 -39.20 -0.29 -1.61 16 24 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 25 H 0.03 0.73 6.38 -51.93 -0.33 0.40 16 26 H 0.01 0.15 6.75 -51.93 -0.35 -0.20 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.07 1.53 6.53 -51.93 -0.34 1.20 16 29 H 0.04 0.76 6.30 -51.93 -0.33 0.43 16 30 H 0.02 0.33 6.28 -51.93 -0.33 0.00 16 31 H 0.06 1.19 8.00 -51.93 -0.42 0.77 16 32 H 0.02 0.47 6.94 -51.93 -0.36 0.11 16 33 H 0.08 1.27 3.17 -51.93 -0.16 1.10 16 34 H 0.08 1.18 8.00 -51.93 -0.42 0.76 16 35 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 41 H 0.13 1.56 6.40 -52.48 -0.34 1.22 16 LS Contribution 321.61 15.07 4.85 4.85 Total: -1.00 -29.19 321.61 -9.73 -38.92 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.12 Total: 2.08 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -2.94 Total: -24.37 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: -0.49 Total: -37.96 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.19 -9.73 -38.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323677442.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.535 kcal (2) G-P(sol) polarization free energy of solvation -29.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds