Wall clock time and date at job start Mon Mar 30 2020 06:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46743 * 2 1 4 4 C 1.50702 * 109.47052 * 240.00185 * 2 1 3 5 5 H 1.07998 * 119.99373 * 240.00214 * 4 2 1 6 6 C 1.37877 * 120.00141 * 59.99983 * 4 2 1 7 7 N 1.31522 * 120.00025 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00015 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47273 * 89.99408 * 8 6 4 10 10 H 1.48500 * 109.47277 * 209.99929 * 8 6 4 11 11 H 1.48502 * 109.46830 * 329.99798 * 8 6 4 12 12 N 1.46897 * 109.47067 * 119.99852 * 2 1 3 13 13 C 1.46894 * 111.00012 * 58.95662 * 12 2 1 14 14 C 1.46903 * 111.00161 * 294.99759 * 12 2 1 15 15 C 1.52994 * 109.47074 * 190.00060 * 14 12 2 16 16 C 1.50704 * 109.47031 * 180.02562 * 15 14 12 17 17 C 1.32559 * 120.00253 * 127.48276 * 16 15 14 18 18 C 1.47818 * 120.00125 * 7.59407 * 17 16 15 19 19 C 1.39530 * 120.13908 * 218.61111 * 18 17 16 20 20 C 1.37980 * 119.85278 * 179.66948 * 19 18 17 21 21 C 1.38348 * 120.13721 * 0.62994 * 20 19 18 22 22 C 1.38342 * 120.28832 * 359.67272 * 21 20 19 23 23 C 1.37969 * 120.14102 * 359.97438 * 22 21 20 24 24 H 1.08996 * 109.46895 * 59.99946 * 1 2 3 25 25 H 1.08994 * 109.46967 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46932 * 300.00562 * 1 2 3 27 27 H 0.96992 * 119.99670 * 180.02562 * 7 6 4 28 28 H 1.08992 * 109.47555 * 59.99767 * 13 12 2 29 29 H 1.09000 * 109.47198 * 180.02562 * 13 12 2 30 30 H 1.09000 * 109.47116 * 299.99947 * 13 12 2 31 31 H 1.09001 * 109.46995 * 310.00426 * 14 12 2 32 32 H 1.09002 * 109.46563 * 69.99876 * 14 12 2 33 33 H 1.09001 * 109.47508 * 300.00051 * 15 14 12 34 34 H 1.09003 * 109.47054 * 60.00443 * 15 14 12 35 35 H 1.08005 * 119.99611 * 307.47998 * 16 15 14 36 36 H 1.08001 * 120.00081 * 187.58554 * 17 16 15 37 37 H 1.07995 * 120.07535 * 359.97438 * 19 18 17 38 38 H 1.07999 * 119.92891 * 180.31737 * 20 19 18 39 39 H 1.08004 * 119.84871 * 179.69126 * 21 20 19 40 40 H 1.08000 * 119.92673 * 180.02562 * 22 21 20 41 41 H 1.08004 * 120.06704 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.3428 -2.1617 -4.4119 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 7 2.0197 -0.6924 1.1994 13 6 1.5284 -2.0760 1.2460 14 6 1.6488 0.0393 2.4181 15 6 2.3790 -0.5661 3.6185 16 6 1.9980 0.1841 4.8688 17 6 1.5518 -0.4762 5.9281 18 6 1.5854 -1.9539 5.9460 19 6 0.5332 -2.6718 6.5155 20 6 0.5674 -4.0511 6.5229 21 6 1.6481 -4.7220 5.9788 22 6 2.6974 -4.0160 5.4182 23 6 2.6719 -2.6367 5.3980 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7082 1.1609 -3.4844 28 1 1.8763 -2.6150 0.3648 29 1 1.9054 -2.5654 2.1440 30 1 0.4386 -2.0742 1.2639 31 1 1.9298 1.0871 2.3124 32 1 0.5723 -0.0344 2.5725 33 1 2.0979 -1.6140 3.7242 34 1 3.4555 -0.4924 3.4640 35 1 2.0884 1.2599 4.9017 36 1 1.1640 0.0654 6.7782 37 1 -0.3085 -2.1490 6.9453 38 1 -0.2488 -4.6080 6.9589 39 1 1.6723 -5.8017 5.9916 40 1 3.5379 -4.5457 4.9948 41 1 3.4916 -2.0867 4.9597 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323677442.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:04 Heat of formation + Delta-G solvation = 30.570558 kcal Electronic energy + Delta-G solvation = -19034.400187 eV Core-core repulsion = 16299.934249 eV Total energy + Delta-G solvation = -2734.465938 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.31753 -39.08324 -36.34890 -34.66603 -32.23414 -31.64512 -30.43444 -29.05213 -27.31313 -26.79512 -24.18288 -23.34950 -22.66737 -20.82503 -20.06490 -18.22448 -17.42830 -16.87743 -16.66946 -16.30523 -15.99390 -15.59758 -15.30431 -14.93968 -14.46910 -14.28840 -14.23123 -13.64056 -13.45168 -13.32923 -13.04551 -12.95945 -12.61729 -12.56394 -12.48301 -12.36460 -12.05152 -11.96442 -11.90191 -11.58640 -11.34298 -10.87947 -10.56729 -10.49478 -9.73669 -9.08807 -8.84776 -8.10233 -6.21212 0.17863 0.55160 1.42894 1.43642 1.50570 1.54680 2.43766 2.98649 3.18900 3.42651 3.88452 4.06380 4.09435 4.18792 4.28699 4.34243 4.43739 4.62016 4.63409 4.64438 4.67815 4.74064 4.76331 4.86489 4.88239 5.06273 5.10901 5.14457 5.16398 5.23543 5.30769 5.50527 5.54106 5.57956 5.67085 5.70580 5.75415 5.80358 5.94858 6.16957 6.19775 6.48513 6.76081 6.92437 7.48079 8.96218 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.028891 B = 0.004288 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.926972 B = 6528.774744 C = 6998.136769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.213 3.787 3 H 0.006 0.994 4 C -0.515 4.515 5 H 0.057 0.943 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.544 5.544 13 C 0.043 3.957 14 C 0.063 3.937 15 C -0.093 4.093 16 C -0.135 4.135 17 C -0.133 4.133 18 C -0.071 4.071 19 C -0.124 4.124 20 C -0.129 4.129 21 C -0.129 4.129 22 C -0.133 4.133 23 C -0.122 4.122 24 H 0.061 0.939 25 H 0.029 0.971 26 H 0.022 0.978 27 H 0.261 0.739 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.010 0.990 31 H 0.058 0.942 32 H 0.018 0.982 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.128 0.872 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.414 -7.403 18.636 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.106 3.894 3 H 0.024 0.976 4 C -0.553 4.553 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.267 5.267 13 C -0.106 4.106 14 C -0.065 4.065 15 C -0.130 4.130 16 C -0.153 4.153 17 C -0.151 4.151 18 C -0.071 4.071 19 C -0.142 4.142 20 C -0.147 4.147 21 C -0.147 4.147 22 C -0.151 4.151 23 C -0.140 4.140 24 H 0.080 0.920 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.029 0.971 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.146 0.854 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.153 0.847 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.864 -7.306 18.469 19.880 hybrid contribution -0.773 0.063 -1.103 1.348 sum 0.092 -7.243 17.366 18.817 Atomic orbital electron populations 1.22188 1.00553 0.98997 0.99867 1.19083 0.89891 0.93000 0.87443 0.97624 1.21393 1.30599 1.12443 0.90902 0.92438 1.25712 0.95412 0.95800 1.01885 1.70019 1.37955 1.24247 1.23989 0.85524 0.78835 0.78214 0.78862 1.20185 1.20933 1.19331 1.62245 1.59641 1.02659 1.02152 1.22171 0.96636 0.90492 1.01269 1.21988 0.96651 0.97722 0.90178 1.21047 1.00504 1.00089 0.91379 1.23345 0.97901 1.00378 0.93724 1.21814 1.01903 0.91758 0.99615 1.19297 0.95093 0.93834 0.98836 1.21517 0.98230 0.94697 0.99751 1.21399 0.99043 0.94344 0.99916 1.21512 0.93957 1.01025 0.98205 1.21372 0.99712 0.94076 0.99899 1.21590 0.98458 0.94979 0.98974 0.91984 0.95149 0.95874 0.92995 0.92603 0.91285 0.97119 0.92381 0.96391 0.90138 0.90668 0.85394 0.84351 0.84727 0.84011 0.84181 0.84720 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.89 8.28 71.98 0.60 -7.29 16 2 C 0.21 11.13 2.34 44.17 0.10 11.23 16 3 H 0.01 0.34 8.03 -2.39 -0.02 0.32 16 4 C -0.51 -28.82 7.94 25.60 0.20 -28.62 16 5 H 0.06 3.21 6.75 -2.91 -0.02 3.19 16 6 C 0.01 0.57 5.30 84.65 0.45 1.02 16 7 N -0.92 -53.74 11.32 21.45 0.24 -53.50 16 8 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 9 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 12 N -0.54 -23.89 4.74 -901.49 -4.27 -28.16 16 13 C 0.04 1.72 8.70 127.69 1.11 2.83 16 14 C 0.06 2.32 4.38 86.30 0.38 2.70 16 15 C -0.09 -2.73 3.91 29.85 0.12 -2.62 16 16 C -0.14 -3.25 9.46 24.54 0.23 -3.02 16 17 C -0.13 -2.92 9.79 23.66 0.23 -2.69 16 18 C -0.07 -1.65 5.13 -20.12 -0.10 -1.76 16 19 C -0.12 -2.59 9.79 22.52 0.22 -2.37 16 20 C -0.13 -2.43 10.03 22.23 0.22 -2.21 16 21 C -0.13 -2.46 10.04 22.32 0.22 -2.23 16 22 C -0.13 -2.81 10.03 22.23 0.22 -2.59 16 23 C -0.12 -2.89 7.32 22.52 0.16 -2.72 16 24 H 0.06 3.44 6.07 -2.39 -0.01 3.43 16 25 H 0.03 1.48 6.38 -2.39 -0.02 1.46 16 26 H 0.02 1.04 6.75 -2.39 -0.02 1.02 16 27 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.06 2.40 6.53 -2.39 -0.02 2.38 16 29 H 0.07 2.39 6.30 -2.39 -0.02 2.37 16 30 H 0.01 0.43 6.28 -2.39 -0.01 0.41 16 31 H 0.06 2.18 8.00 -2.39 -0.02 2.16 16 32 H 0.02 0.68 6.94 -2.39 -0.02 0.67 16 33 H 0.08 2.39 3.17 -2.39 -0.01 2.38 16 34 H 0.07 2.22 8.00 -2.39 -0.02 2.20 16 35 H 0.13 2.72 8.06 -2.91 -0.02 2.69 16 36 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 40 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 41 H 0.12 2.94 6.40 -2.91 -0.02 2.92 16 Total: -1.00 -62.14 321.61 3.37 -58.77 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 1.00 Total: 17.06 kcal Atomic # 6 Polarization: -44.72 SS G_CDS: 4.37 Total: -40.35 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -4.03 Total: -81.66 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -62.14 3.37 -58.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323677442.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.341 kcal (2) G-P(sol) polarization free energy of solvation -62.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds