Wall clock time and date at job start Mon Mar 30 2020 06:32:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09002 * 109.46743 * 2 1
4 4 C 1.50702 * 109.47052 * 240.00185 * 2 1 3
5 5 H 1.07998 * 119.99373 * 240.00214 * 4 2 1
6 6 C 1.37877 * 120.00141 * 59.99983 * 4 2 1
7 7 N 1.31522 * 120.00025 * 359.97438 * 6 4 2
8 8 Si 1.86799 * 120.00015 * 180.02562 * 6 4 2
9 9 H 1.48503 * 109.47273 * 89.99408 * 8 6 4
10 10 H 1.48500 * 109.47277 * 209.99929 * 8 6 4
11 11 H 1.48502 * 109.46830 * 329.99798 * 8 6 4
12 12 N 1.46897 * 109.47067 * 119.99852 * 2 1 3
13 13 C 1.46894 * 111.00012 * 58.95662 * 12 2 1
14 14 C 1.46903 * 111.00161 * 294.99759 * 12 2 1
15 15 C 1.52994 * 109.47074 * 190.00060 * 14 12 2
16 16 C 1.50704 * 109.47031 * 180.02562 * 15 14 12
17 17 C 1.32559 * 120.00253 * 127.48276 * 16 15 14
18 18 C 1.47818 * 120.00125 * 7.59407 * 17 16 15
19 19 C 1.39530 * 120.13908 * 218.61111 * 18 17 16
20 20 C 1.37980 * 119.85278 * 179.66948 * 19 18 17
21 21 C 1.38348 * 120.13721 * 0.62994 * 20 19 18
22 22 C 1.38342 * 120.28832 * 359.67272 * 21 20 19
23 23 C 1.37969 * 120.14102 * 359.97438 * 22 21 20
24 24 H 1.08996 * 109.46895 * 59.99946 * 1 2 3
25 25 H 1.08994 * 109.46967 * 180.02562 * 1 2 3
26 26 H 1.09003 * 109.46932 * 300.00562 * 1 2 3
27 27 H 0.96992 * 119.99670 * 180.02562 * 7 6 4
28 28 H 1.08992 * 109.47555 * 59.99767 * 13 12 2
29 29 H 1.09000 * 109.47198 * 180.02562 * 13 12 2
30 30 H 1.09000 * 109.47116 * 299.99947 * 13 12 2
31 31 H 1.09001 * 109.46995 * 310.00426 * 14 12 2
32 32 H 1.09002 * 109.46563 * 69.99876 * 14 12 2
33 33 H 1.09001 * 109.47508 * 300.00051 * 15 14 12
34 34 H 1.09003 * 109.47054 * 60.00443 * 15 14 12
35 35 H 1.08005 * 119.99611 * 307.47998 * 16 15 14
36 36 H 1.08001 * 120.00081 * 187.58554 * 17 16 15
37 37 H 1.07995 * 120.07535 * 359.97438 * 19 18 17
38 38 H 1.07999 * 119.92891 * 180.31737 * 20 19 18
39 39 H 1.08004 * 119.84871 * 179.69126 * 21 20 19
40 40 H 1.08000 * 119.92673 * 180.02562 * 22 21 20
41 41 H 1.08004 * 120.06704 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 -1.2305
5 1 2.6532 -1.5885 -1.1313
6 6 1.6993 -0.2393 -2.4828
7 7 0.9427 0.8297 -2.6034
8 14 2.3214 -1.1203 -4.0080
9 1 1.3428 -2.1617 -4.4119
10 1 2.4866 -0.1413 -5.1123
11 1 3.6293 -1.7582 -3.7122
12 7 2.0197 -0.6924 1.1994
13 6 1.5284 -2.0760 1.2460
14 6 1.6488 0.0393 2.4181
15 6 2.3790 -0.5661 3.6185
16 6 1.9980 0.1841 4.8688
17 6 1.5518 -0.4762 5.9281
18 6 1.5854 -1.9539 5.9460
19 6 0.5332 -2.6718 6.5155
20 6 0.5674 -4.0511 6.5229
21 6 1.6481 -4.7220 5.9788
22 6 2.6974 -4.0160 5.4182
23 6 2.6719 -2.6367 5.3980
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0276 0.0005
26 1 -0.3633 0.5139 0.8900
27 1 0.7082 1.1609 -3.4844
28 1 1.8763 -2.6150 0.3648
29 1 1.9054 -2.5654 2.1440
30 1 0.4386 -2.0742 1.2639
31 1 1.9298 1.0871 2.3124
32 1 0.5723 -0.0344 2.5725
33 1 2.0979 -1.6140 3.7242
34 1 3.4555 -0.4924 3.4640
35 1 2.0884 1.2599 4.9017
36 1 1.1640 0.0654 6.7782
37 1 -0.3085 -2.1490 6.9453
38 1 -0.2488 -4.6080 6.9589
39 1 1.6723 -5.8017 5.9916
40 1 3.5379 -4.5457 4.9948
41 1 3.4916 -2.0867 4.9597
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000323677442.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:32:04
Heat of formation + Delta-G solvation = 30.570558 kcal
Electronic energy + Delta-G solvation = -19034.400187 eV
Core-core repulsion = 16299.934249 eV
Total energy + Delta-G solvation = -2734.465938 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 259.163 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-40.31753 -39.08324 -36.34890 -34.66603 -32.23414 -31.64512 -30.43444 -29.05213
-27.31313 -26.79512 -24.18288 -23.34950 -22.66737 -20.82503 -20.06490 -18.22448
-17.42830 -16.87743 -16.66946 -16.30523 -15.99390 -15.59758 -15.30431 -14.93968
-14.46910 -14.28840 -14.23123 -13.64056 -13.45168 -13.32923 -13.04551 -12.95945
-12.61729 -12.56394 -12.48301 -12.36460 -12.05152 -11.96442 -11.90191 -11.58640
-11.34298 -10.87947 -10.56729 -10.49478 -9.73669 -9.08807 -8.84776 -8.10233
-6.21212 0.17863 0.55160 1.42894 1.43642 1.50570 1.54680 2.43766
2.98649 3.18900 3.42651 3.88452 4.06380 4.09435 4.18792 4.28699
4.34243 4.43739 4.62016 4.63409 4.64438 4.67815 4.74064 4.76331
4.86489 4.88239 5.06273 5.10901 5.14457 5.16398 5.23543 5.30769
5.50527 5.54106 5.57956 5.67085 5.70580 5.75415 5.80358 5.94858
6.16957 6.19775 6.48513 6.76081 6.92437 7.48079 8.96218
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.028891 B = 0.004288 C = 0.004000
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 968.926972 B = 6528.774744 C = 6998.136769
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.213 3.787
3 H 0.006 0.994
4 C -0.515 4.515
5 H 0.057 0.943
6 C 0.010 3.990
7 N -0.922 5.922
8 Si 0.960 3.040
9 H -0.276 1.276
10 H -0.284 1.284
11 H -0.269 1.269
12 N -0.544 5.544
13 C 0.043 3.957
14 C 0.063 3.937
15 C -0.093 4.093
16 C -0.135 4.135
17 C -0.133 4.133
18 C -0.071 4.071
19 C -0.124 4.124
20 C -0.129 4.129
21 C -0.129 4.129
22 C -0.133 4.133
23 C -0.122 4.122
24 H 0.061 0.939
25 H 0.029 0.971
26 H 0.022 0.978
27 H 0.261 0.739
28 H 0.055 0.945
29 H 0.069 0.931
30 H 0.010 0.990
31 H 0.058 0.942
32 H 0.018 0.982
33 H 0.080 0.920
34 H 0.075 0.925
35 H 0.128 0.872
36 H 0.139 0.861
37 H 0.135 0.865
38 H 0.142 0.858
39 H 0.140 0.860
40 H 0.135 0.865
41 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.414 -7.403 18.636 20.057
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.106 3.894
3 H 0.024 0.976
4 C -0.553 4.553
5 H 0.076 0.924
6 C -0.188 4.188
7 N -0.562 5.562
8 Si 0.786 3.214
9 H -0.202 1.202
10 H -0.209 1.209
11 H -0.193 1.193
12 N -0.267 5.267
13 C -0.106 4.106
14 C -0.065 4.065
15 C -0.130 4.130
16 C -0.153 4.153
17 C -0.151 4.151
18 C -0.071 4.071
19 C -0.142 4.142
20 C -0.147 4.147
21 C -0.147 4.147
22 C -0.151 4.151
23 C -0.140 4.140
24 H 0.080 0.920
25 H 0.049 0.951
26 H 0.041 0.959
27 H 0.070 0.930
28 H 0.074 0.926
29 H 0.087 0.913
30 H 0.029 0.971
31 H 0.076 0.924
32 H 0.036 0.964
33 H 0.099 0.901
34 H 0.093 0.907
35 H 0.146 0.854
36 H 0.156 0.844
37 H 0.153 0.847
38 H 0.160 0.840
39 H 0.158 0.842
40 H 0.153 0.847
41 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges 0.864 -7.306 18.469 19.880
hybrid contribution -0.773 0.063 -1.103 1.348
sum 0.092 -7.243 17.366 18.817
Atomic orbital electron populations
1.22188 1.00553 0.98997 0.99867 1.19083 0.89891 0.93000 0.87443
0.97624 1.21393 1.30599 1.12443 0.90902 0.92438 1.25712 0.95412
0.95800 1.01885 1.70019 1.37955 1.24247 1.23989 0.85524 0.78835
0.78214 0.78862 1.20185 1.20933 1.19331 1.62245 1.59641 1.02659
1.02152 1.22171 0.96636 0.90492 1.01269 1.21988 0.96651 0.97722
0.90178 1.21047 1.00504 1.00089 0.91379 1.23345 0.97901 1.00378
0.93724 1.21814 1.01903 0.91758 0.99615 1.19297 0.95093 0.93834
0.98836 1.21517 0.98230 0.94697 0.99751 1.21399 0.99043 0.94344
0.99916 1.21512 0.93957 1.01025 0.98205 1.21372 0.99712 0.94076
0.99899 1.21590 0.98458 0.94979 0.98974 0.91984 0.95149 0.95874
0.92995 0.92603 0.91285 0.97119 0.92381 0.96391 0.90138 0.90668
0.85394 0.84351 0.84727 0.84011 0.84181 0.84720 0.85727
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -7.89 8.28 71.98 0.60 -7.29 16
2 C 0.21 11.13 2.34 44.17 0.10 11.23 16
3 H 0.01 0.34 8.03 -2.39 -0.02 0.32 16
4 C -0.51 -28.82 7.94 25.60 0.20 -28.62 16
5 H 0.06 3.21 6.75 -2.91 -0.02 3.19 16
6 C 0.01 0.57 5.30 84.65 0.45 1.02 16
7 N -0.92 -53.74 11.32 21.45 0.24 -53.50 16
8 Si 0.96 44.15 29.54 68.60 2.03 46.18 16
9 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16
10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16
11 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16
12 N -0.54 -23.89 4.74 -901.49 -4.27 -28.16 16
13 C 0.04 1.72 8.70 127.69 1.11 2.83 16
14 C 0.06 2.32 4.38 86.30 0.38 2.70 16
15 C -0.09 -2.73 3.91 29.85 0.12 -2.62 16
16 C -0.14 -3.25 9.46 24.54 0.23 -3.02 16
17 C -0.13 -2.92 9.79 23.66 0.23 -2.69 16
18 C -0.07 -1.65 5.13 -20.12 -0.10 -1.76 16
19 C -0.12 -2.59 9.79 22.52 0.22 -2.37 16
20 C -0.13 -2.43 10.03 22.23 0.22 -2.21 16
21 C -0.13 -2.46 10.04 22.32 0.22 -2.23 16
22 C -0.13 -2.81 10.03 22.23 0.22 -2.59 16
23 C -0.12 -2.89 7.32 22.52 0.16 -2.72 16
24 H 0.06 3.44 6.07 -2.39 -0.01 3.43 16
25 H 0.03 1.48 6.38 -2.39 -0.02 1.46 16
26 H 0.02 1.04 6.75 -2.39 -0.02 1.02 16
27 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16
28 H 0.06 2.40 6.53 -2.39 -0.02 2.38 16
29 H 0.07 2.39 6.30 -2.39 -0.02 2.37 16
30 H 0.01 0.43 6.28 -2.39 -0.01 0.41 16
31 H 0.06 2.18 8.00 -2.39 -0.02 2.16 16
32 H 0.02 0.68 6.94 -2.39 -0.02 0.67 16
33 H 0.08 2.39 3.17 -2.39 -0.01 2.38 16
34 H 0.07 2.22 8.00 -2.39 -0.02 2.20 16
35 H 0.13 2.72 8.06 -2.91 -0.02 2.69 16
36 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16
37 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16
38 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16
39 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16
40 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16
41 H 0.12 2.94 6.40 -2.91 -0.02 2.92 16
Total: -1.00 -62.14 321.61 3.37 -58.77
By element:
Atomic # 1 Polarization: 16.06 SS G_CDS: 1.00 Total: 17.06 kcal
Atomic # 6 Polarization: -44.72 SS G_CDS: 4.37 Total: -40.35 kcal
Atomic # 7 Polarization: -77.63 SS G_CDS: -4.03 Total: -81.66 kcal
Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal
Total: -62.14 3.37 -58.77 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000323677442.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.341 kcal
(2) G-P(sol) polarization free energy of solvation -62.136 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.205 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.771 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.571 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds