Wall clock time and date at job start Mon Mar 30 2020 06:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.50703 * 109.47230 * 240.00104 * 2 1 3 5 5 H 1.08005 * 119.99876 * 239.99714 * 4 2 1 6 6 C 1.37875 * 119.99989 * 59.99990 * 4 2 1 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47285 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47233 * 119.99722 * 8 6 4 11 11 H 1.48500 * 109.46790 * 239.99650 * 8 6 4 12 12 N 1.46906 * 109.47378 * 119.99897 * 2 1 3 13 13 C 1.46895 * 110.99680 * 58.95697 * 12 2 1 14 14 C 1.46896 * 111.00013 * 295.00378 * 12 2 1 15 15 C 1.53000 * 109.47052 * 189.99960 * 14 12 2 16 16 C 1.50698 * 109.47310 * 179.97438 * 15 14 12 17 17 C 1.32567 * 120.00296 * 124.99380 * 16 15 14 18 18 C 1.47809 * 120.00202 * 180.02562 * 17 16 15 19 19 C 1.39539 * 120.14144 * 359.73319 * 18 17 16 20 20 C 1.37976 * 119.85399 * 179.67698 * 19 18 17 21 21 C 1.38345 * 120.14050 * 0.61552 * 20 19 18 22 22 C 1.38353 * 120.28858 * 359.68128 * 21 20 19 23 23 C 1.37971 * 120.13685 * 359.97438 * 22 21 20 24 24 H 1.08992 * 109.47715 * 60.00053 * 1 2 3 25 25 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 27 27 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47549 * 60.00387 * 13 12 2 29 29 H 1.09003 * 109.47360 * 180.02562 * 13 12 2 30 30 H 1.08996 * 109.47605 * 299.99824 * 13 12 2 31 31 H 1.09001 * 109.47061 * 309.99578 * 14 12 2 32 32 H 1.08997 * 109.47526 * 69.99455 * 14 12 2 33 33 H 1.09001 * 109.46876 * 299.99732 * 15 14 12 34 34 H 1.09007 * 109.47299 * 59.99973 * 15 14 12 35 35 H 1.08007 * 120.00374 * 305.00435 * 16 15 14 36 36 H 1.07998 * 119.99583 * 0.02562 * 17 16 15 37 37 H 1.08002 * 120.07131 * 359.97231 * 19 18 17 38 38 H 1.07999 * 119.93206 * 180.31745 * 20 19 18 39 39 H 1.08005 * 119.85913 * 179.69840 * 21 20 19 40 40 H 1.07995 * 119.92656 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.06686 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 3.1464 -2.2869 -3.6038 10 1 1.1660 -1.5867 -4.8161 11 1 3.1465 -0.1872 -4.8164 12 7 2.0197 -0.6925 1.1995 13 6 1.5284 -2.0761 1.2459 14 6 1.6487 0.0391 2.4181 15 6 2.3789 -0.5663 3.6186 16 6 1.9988 0.1846 4.8686 17 6 1.5062 -0.4697 5.9110 18 6 1.1329 0.2669 7.1369 19 6 1.3029 1.6503 7.2023 20 6 0.9463 2.3329 8.3471 21 6 0.4329 1.6469 9.4334 22 6 0.2676 0.2744 9.3772 23 6 0.6138 -0.4189 8.2357 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.7081 1.1608 -3.4844 28 1 1.8764 -2.6150 0.3647 29 1 1.9054 -2.5656 2.1440 30 1 0.4386 -2.0743 1.2639 31 1 1.9297 1.0870 2.3125 32 1 0.5722 -0.0345 2.5726 33 1 2.0979 -1.6141 3.7241 34 1 3.4554 -0.4925 3.4641 35 1 2.1276 1.2560 4.9153 36 1 1.3777 -1.5410 5.8645 37 1 1.7084 2.1863 6.3568 38 1 1.0725 3.4043 8.3972 39 1 0.1598 2.1851 10.3290 40 1 -0.1340 -0.2551 10.2284 41 1 0.4839 -1.4902 8.1930 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323677447.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:07 Heat of formation + Delta-G solvation = 37.784135 kcal Electronic energy + Delta-G solvation = -18279.160402 eV Core-core repulsion = 15545.007268 eV Total energy + Delta-G solvation = -2734.153134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.29893 -37.52802 -35.11784 -32.86808 -31.29682 -31.05276 -28.83629 -27.51022 -25.29558 -25.07120 -23.18191 -22.50688 -21.19195 -19.29786 -19.01408 -17.19594 -16.12583 -15.58372 -15.30096 -14.87824 -14.61924 -14.09042 -13.90747 -13.57315 -13.43777 -13.08013 -12.78595 -12.72187 -12.00667 -11.88595 -11.64661 -11.37135 -11.09053 -11.05990 -10.94952 -10.73580 -10.64990 -10.55070 -10.28545 -10.03310 -9.99585 -9.70468 -9.09565 -8.83843 -8.37759 -8.09540 -7.11307 -5.99575 -4.03145 0.85936 1.26782 2.50520 3.30760 3.38583 3.43184 3.82167 4.42130 4.60681 4.69947 4.81566 4.93555 5.08904 5.19828 5.31199 5.32403 5.35674 5.52743 5.66883 5.80997 5.83472 5.92038 6.05658 6.17877 6.23347 6.27330 6.36528 6.37615 6.49739 6.55776 6.69096 6.70553 6.84257 6.85361 6.89883 6.94029 7.15659 7.52260 7.74354 7.85884 8.14729 8.40897 8.62993 9.03290 9.61930 11.07683 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.050561 B = 0.003026 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.657500 B = 9252.220871 C = 9484.784859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.210 3.790 3 H 0.038 0.962 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.537 5.537 13 C 0.033 3.967 14 C 0.060 3.940 15 C -0.092 4.092 16 C -0.115 4.115 17 C -0.146 4.146 18 C -0.042 4.042 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.117 4.117 24 H 0.087 0.913 25 H 0.030 0.970 26 H 0.007 0.993 27 H 0.259 0.741 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.017 0.983 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.710 -0.266 20.514 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.103 3.897 3 H 0.056 0.944 4 C -0.537 4.537 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.260 5.260 13 C -0.116 4.116 14 C -0.069 4.069 15 C -0.130 4.130 16 C -0.133 4.133 17 C -0.164 4.164 18 C -0.042 4.042 19 C -0.138 4.138 20 C -0.135 4.135 21 C -0.149 4.149 22 C -0.138 4.138 23 C -0.135 4.135 24 H 0.106 0.894 25 H 0.049 0.951 26 H 0.026 0.974 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.035 0.965 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.130 0.870 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.266 -0.170 20.330 20.333 hybrid contribution -0.738 -0.320 -0.808 1.140 sum -1.005 -0.490 19.523 19.555 Atomic orbital electron populations 1.22395 1.00931 0.99317 1.00487 1.19315 0.89724 0.94541 0.86075 0.94367 1.21175 1.30392 1.12422 0.89702 0.91888 1.24940 0.95280 0.95156 0.99029 1.69901 1.37163 1.23154 1.23244 0.86470 0.78508 0.79669 0.82933 1.19753 1.21209 1.21073 1.62352 1.59511 1.01992 1.02173 1.22262 0.97114 0.91398 1.00827 1.21938 0.96622 0.98176 0.90164 1.20813 1.01531 0.98874 0.91735 1.23540 0.95457 0.99959 0.94386 1.21621 1.03030 0.99145 0.92640 1.19160 0.97778 0.93206 0.94057 1.21377 1.00354 0.93773 0.98336 1.21090 0.99086 0.99857 0.93479 1.21169 1.00522 0.94543 0.98635 1.21074 1.00233 0.94489 0.97968 1.21270 0.99425 0.99817 0.92956 0.89403 0.95130 0.97395 0.93099 0.90973 0.93907 0.96470 0.91613 0.95603 0.91526 0.89966 0.87002 0.86495 0.85677 0.86091 0.86340 0.86193 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 8.28 37.15 0.31 -3.91 16 2 C 0.21 5.31 2.34 -68.86 -0.16 5.15 16 3 H 0.04 1.06 8.03 -51.93 -0.42 0.65 16 4 C -0.50 -13.68 7.94 -34.44 -0.27 -13.95 16 5 H 0.06 1.73 6.75 -52.48 -0.35 1.38 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.89 -25.62 11.32 55.43 0.63 -24.99 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 12 N -0.54 -11.55 4.74 -236.29 -1.12 -12.67 16 13 C 0.03 0.64 8.70 60.06 0.52 1.16 16 14 C 0.06 1.08 4.38 -3.83 -0.02 1.06 16 15 C -0.09 -1.34 5.59 -27.88 -0.16 -1.49 16 16 C -0.12 -1.46 8.94 -36.22 -0.32 -1.78 16 17 C -0.15 -1.76 9.52 -37.58 -0.36 -2.12 16 18 C -0.04 -0.49 5.87 -105.01 -0.62 -1.11 16 19 C -0.12 -1.34 9.40 -39.19 -0.37 -1.71 16 20 C -0.12 -1.15 10.03 -39.64 -0.40 -1.55 16 21 C -0.13 -1.20 10.04 -39.50 -0.40 -1.60 16 22 C -0.12 -1.12 10.03 -39.64 -0.40 -1.51 16 23 C -0.12 -1.22 9.79 -39.20 -0.38 -1.60 16 24 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 25 H 0.03 0.73 6.39 -51.93 -0.33 0.39 16 26 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.07 1.52 6.53 -51.93 -0.34 1.18 16 29 H 0.04 0.72 6.30 -51.93 -0.33 0.39 16 30 H 0.02 0.34 6.28 -51.93 -0.33 0.01 16 31 H 0.07 1.20 8.00 -51.93 -0.42 0.78 16 32 H 0.03 0.48 6.94 -51.93 -0.36 0.12 16 33 H 0.07 0.94 6.14 -51.93 -0.32 0.62 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.11 1.32 6.04 -52.48 -0.32 1.00 16 36 H 0.12 1.30 7.87 -52.49 -0.41 0.89 16 37 H 0.13 1.27 6.17 -52.49 -0.32 0.95 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -29.06 326.00 -9.87 -38.93 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.16 Total: 0.93 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: -3.11 Total: -23.48 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.49 Total: -37.66 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.06 -9.87 -38.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323677447.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.713 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds