Wall clock time and date at job start Mon Mar 30 2020 06:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.50703 * 109.47230 * 240.00104 * 2 1 3 5 5 H 1.08005 * 119.99876 * 239.99714 * 4 2 1 6 6 C 1.37875 * 119.99989 * 59.99990 * 4 2 1 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47285 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47233 * 119.99722 * 8 6 4 11 11 H 1.48500 * 109.46790 * 239.99650 * 8 6 4 12 12 N 1.46906 * 109.47378 * 119.99897 * 2 1 3 13 13 C 1.46895 * 110.99680 * 58.95697 * 12 2 1 14 14 C 1.46896 * 111.00013 * 295.00378 * 12 2 1 15 15 C 1.53000 * 109.47052 * 189.99960 * 14 12 2 16 16 C 1.50698 * 109.47310 * 179.97438 * 15 14 12 17 17 C 1.32567 * 120.00296 * 124.99380 * 16 15 14 18 18 C 1.47809 * 120.00202 * 180.02562 * 17 16 15 19 19 C 1.39539 * 120.14144 * 359.73319 * 18 17 16 20 20 C 1.37976 * 119.85399 * 179.67698 * 19 18 17 21 21 C 1.38345 * 120.14050 * 0.61552 * 20 19 18 22 22 C 1.38353 * 120.28858 * 359.68128 * 21 20 19 23 23 C 1.37971 * 120.13685 * 359.97438 * 22 21 20 24 24 H 1.08992 * 109.47715 * 60.00053 * 1 2 3 25 25 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 27 27 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47549 * 60.00387 * 13 12 2 29 29 H 1.09003 * 109.47360 * 180.02562 * 13 12 2 30 30 H 1.08996 * 109.47605 * 299.99824 * 13 12 2 31 31 H 1.09001 * 109.47061 * 309.99578 * 14 12 2 32 32 H 1.08997 * 109.47526 * 69.99455 * 14 12 2 33 33 H 1.09001 * 109.46876 * 299.99732 * 15 14 12 34 34 H 1.09007 * 109.47299 * 59.99973 * 15 14 12 35 35 H 1.08007 * 120.00374 * 305.00435 * 16 15 14 36 36 H 1.07998 * 119.99583 * 0.02562 * 17 16 15 37 37 H 1.08002 * 120.07131 * 359.97231 * 19 18 17 38 38 H 1.07999 * 119.93206 * 180.31745 * 20 19 18 39 39 H 1.08005 * 119.85913 * 179.69840 * 21 20 19 40 40 H 1.07995 * 119.92656 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.06686 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 3.1464 -2.2869 -3.6038 10 1 1.1660 -1.5867 -4.8161 11 1 3.1465 -0.1872 -4.8164 12 7 2.0197 -0.6925 1.1995 13 6 1.5284 -2.0761 1.2459 14 6 1.6487 0.0391 2.4181 15 6 2.3789 -0.5663 3.6186 16 6 1.9988 0.1846 4.8686 17 6 1.5062 -0.4697 5.9110 18 6 1.1329 0.2669 7.1369 19 6 1.3029 1.6503 7.2023 20 6 0.9463 2.3329 8.3471 21 6 0.4329 1.6469 9.4334 22 6 0.2676 0.2744 9.3772 23 6 0.6138 -0.4189 8.2357 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.7081 1.1608 -3.4844 28 1 1.8764 -2.6150 0.3647 29 1 1.9054 -2.5656 2.1440 30 1 0.4386 -2.0743 1.2639 31 1 1.9297 1.0870 2.3125 32 1 0.5722 -0.0345 2.5726 33 1 2.0979 -1.6141 3.7241 34 1 3.4554 -0.4925 3.4641 35 1 2.1276 1.2560 4.9153 36 1 1.3777 -1.5410 5.8645 37 1 1.7084 2.1863 6.3568 38 1 1.0725 3.4043 8.3972 39 1 0.1598 2.1851 10.3290 40 1 -0.1340 -0.2551 10.2284 41 1 0.4839 -1.4902 8.1930 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323677447.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:07 Heat of formation + Delta-G solvation = 23.008892 kcal Electronic energy + Delta-G solvation = -18279.801105 eV Core-core repulsion = 15545.007268 eV Total energy + Delta-G solvation = -2734.793836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.07168 -39.17760 -36.28562 -34.69037 -32.52702 -31.81774 -30.46444 -28.85207 -27.28082 -26.64318 -24.22076 -23.50958 -22.39606 -20.82033 -20.20206 -18.23124 -17.95287 -17.01590 -16.42103 -16.17273 -15.96255 -15.47941 -15.28026 -14.88101 -14.46294 -14.24077 -13.97720 -13.86744 -13.64399 -13.35555 -13.06522 -12.85266 -12.69795 -12.59017 -12.44315 -12.31121 -12.02454 -11.96024 -11.90083 -11.68022 -11.38229 -10.98889 -10.85440 -10.50086 -9.84055 -8.97891 -8.83963 -8.10598 -6.21525 0.03387 0.52195 1.41840 1.43639 1.55552 1.62501 2.43509 3.03783 3.18643 3.39501 3.84278 3.91613 4.10899 4.15772 4.27222 4.38603 4.44023 4.51812 4.59902 4.63588 4.65123 4.74561 4.77867 4.84729 4.90386 5.04315 5.08561 5.13652 5.16678 5.20053 5.28991 5.45292 5.54731 5.57044 5.63377 5.70938 5.76844 5.80060 5.94580 6.13563 6.20089 6.49011 6.76389 6.92819 7.47918 8.96015 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.050561 B = 0.003026 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.657500 B = 9252.220871 C = 9484.784859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.213 3.787 3 H 0.004 0.996 4 C -0.514 4.514 5 H 0.058 0.942 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.282 1.282 12 N -0.547 5.547 13 C 0.037 3.963 14 C 0.062 3.938 15 C -0.077 4.077 16 C -0.133 4.133 17 C -0.132 4.132 18 C -0.069 4.069 19 C -0.136 4.136 20 C -0.127 4.127 21 C -0.131 4.131 22 C -0.125 4.125 23 C -0.125 4.125 24 H 0.061 0.939 25 H 0.032 0.968 26 H 0.023 0.977 27 H 0.261 0.739 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.014 0.986 31 H 0.056 0.944 32 H 0.021 0.979 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.768 -1.138 22.257 22.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.106 3.894 3 H 0.022 0.978 4 C -0.552 4.552 5 H 0.077 0.923 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.786 3.214 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.270 5.270 13 C -0.111 4.111 14 C -0.066 4.066 15 C -0.114 4.114 16 C -0.151 4.151 17 C -0.150 4.150 18 C -0.069 4.069 19 C -0.154 4.154 20 C -0.145 4.145 21 C -0.149 4.149 22 C -0.143 4.143 23 C -0.143 4.143 24 H 0.079 0.921 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.040 0.960 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.133 0.867 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.157 0.843 39 H 0.161 0.839 40 H 0.163 0.837 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.321 -1.048 22.093 22.120 hybrid contribution -0.753 -0.014 -1.200 1.416 sum -1.073 -1.062 20.894 20.948 Atomic orbital electron populations 1.22190 1.00487 0.99127 0.99874 1.19078 0.89934 0.92952 0.87471 0.97765 1.21437 1.30458 1.12426 0.90884 0.92350 1.25727 0.95444 0.95843 1.01952 1.70028 1.38007 1.24319 1.23928 0.85462 0.78039 0.78642 0.79214 1.19114 1.20694 1.20750 1.62253 1.59770 1.02876 1.02127 1.22249 0.96908 0.90282 1.01680 1.21977 0.96821 0.97740 0.90064 1.20616 1.00840 0.99126 0.90820 1.23362 0.97539 1.00148 0.94044 1.21777 1.01120 0.99628 0.92476 1.19301 0.99436 0.93671 0.94518 1.21561 1.00809 0.93930 0.99086 1.21389 0.98891 1.00956 0.93288 1.21557 0.99305 0.94810 0.99219 1.21430 0.99689 0.94823 0.98362 1.21536 0.99044 1.00711 0.92959 0.92064 0.94937 0.95834 0.93011 0.92664 0.90537 0.96779 0.92524 0.96037 0.90778 0.90262 0.86653 0.85581 0.85628 0.84332 0.83864 0.83749 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.84 8.28 71.98 0.60 -7.24 16 2 C 0.21 11.02 2.34 44.17 0.10 11.12 16 3 H 0.00 0.26 8.03 -2.38 -0.02 0.24 16 4 C -0.51 -28.57 7.94 25.60 0.20 -28.37 16 5 H 0.06 3.24 6.75 -2.91 -0.02 3.22 16 6 C 0.01 0.47 5.30 84.65 0.45 0.92 16 7 N -0.92 -53.71 11.32 21.45 0.24 -53.47 16 8 Si 0.96 44.07 29.54 68.60 2.03 46.09 16 9 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 N -0.55 -23.56 4.74 -901.49 -4.27 -27.84 16 13 C 0.04 1.42 8.70 127.69 1.11 2.53 16 14 C 0.06 2.23 4.38 86.30 0.38 2.61 16 15 C -0.08 -2.15 5.59 29.85 0.17 -1.98 16 16 C -0.13 -3.25 8.94 24.53 0.22 -3.03 16 17 C -0.13 -3.00 9.52 23.65 0.23 -2.78 16 18 C -0.07 -1.54 5.87 -20.12 -0.12 -1.66 16 19 C -0.14 -2.90 9.40 22.52 0.21 -2.69 16 20 C -0.13 -2.28 10.03 22.23 0.22 -2.06 16 21 C -0.13 -2.07 10.04 22.32 0.22 -1.85 16 22 C -0.13 -2.02 10.03 22.23 0.22 -1.79 16 23 C -0.12 -2.36 9.79 22.52 0.22 -2.14 16 24 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 25 H 0.03 1.55 6.39 -2.38 -0.02 1.54 16 26 H 0.02 1.04 6.75 -2.39 -0.02 1.03 16 27 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.05 2.30 6.53 -2.39 -0.02 2.28 16 29 H 0.08 2.41 6.30 -2.39 -0.02 2.39 16 30 H 0.01 0.54 6.28 -2.39 -0.02 0.52 16 31 H 0.06 2.10 8.00 -2.39 -0.02 2.09 16 32 H 0.02 0.79 6.94 -2.39 -0.02 0.77 16 33 H 0.07 1.94 6.14 -2.39 -0.01 1.93 16 34 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.12 2.71 6.04 -2.91 -0.02 2.69 16 36 H 0.13 2.56 7.87 -2.91 -0.02 2.54 16 37 H 0.13 2.53 6.17 -2.91 -0.02 2.51 16 38 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 41 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -62.23 326.00 3.43 -58.81 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.00 Total: 14.80 kcal Atomic # 6 Polarization: -42.83 SS G_CDS: 4.44 Total: -38.39 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -4.03 Total: -81.30 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -62.23 3.43 -58.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323677447.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.816 kcal (2) G-P(sol) polarization free energy of solvation -62.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds