Wall clock time and date at job start Mon Mar 30 2020 06:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46896 * 109.47374 * 2 1 4 4 C 1.46894 * 111.00012 * 297.54153 * 3 2 1 5 5 C 1.50697 * 109.47166 * 292.79065 * 4 3 2 6 6 H 1.07997 * 120.00061 * 354.99696 * 5 4 3 7 7 C 1.37879 * 119.99771 * 174.98455 * 5 4 3 8 8 N 1.31516 * 120.00285 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99698 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46940 * 60.00524 * 9 7 5 11 11 H 1.48498 * 109.46840 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47201 * 300.00439 * 9 7 5 13 13 C 1.46904 * 110.99974 * 61.49594 * 3 2 1 14 14 C 1.53004 * 109.47106 * 66.04311 * 13 3 2 15 15 C 1.50698 * 109.46925 * 180.02562 * 14 13 3 16 16 C 1.32570 * 119.99701 * 125.00533 * 15 14 13 17 17 C 1.47811 * 119.99485 * 180.02562 * 16 15 14 18 18 C 1.39538 * 120.13887 * 179.97438 * 17 16 15 19 19 C 1.37973 * 119.85960 * 179.97438 * 18 17 16 20 20 C 1.38346 * 120.13984 * 0.02562 * 19 18 17 21 21 C 1.38337 * 120.28640 * 359.97438 * 20 19 18 22 22 C 1.37974 * 120.14415 * 0.02562 * 21 20 19 23 23 H 1.08999 * 109.47149 * 299.50584 * 1 2 3 24 24 H 1.09002 * 109.47217 * 59.50417 * 1 2 3 25 25 H 1.09006 * 109.47461 * 179.50348 * 1 2 3 26 26 H 1.09001 * 109.47164 * 239.99704 * 2 1 3 27 27 H 1.09000 * 109.46756 * 119.99953 * 2 1 3 28 28 H 1.09000 * 109.47172 * 52.79880 * 4 3 2 29 29 H 1.09005 * 109.46852 * 172.79323 * 4 3 2 30 30 H 0.97000 * 119.99862 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.46890 * 306.04697 * 13 3 2 32 32 H 1.08999 * 109.47129 * 186.04348 * 13 3 2 33 33 H 1.09000 * 109.46931 * 60.00411 * 14 13 3 34 34 H 1.08999 * 109.47156 * 300.00020 * 14 13 3 35 35 H 1.08005 * 120.00096 * 305.00295 * 15 14 13 36 36 H 1.07994 * 119.99812 * 359.97438 * 16 15 14 37 37 H 1.08009 * 120.07112 * 359.97438 * 18 17 16 38 38 H 1.07997 * 119.93147 * 179.72096 * 19 18 17 39 39 H 1.08000 * 119.85780 * 179.97438 * 20 19 18 40 40 H 1.08001 * 119.93028 * 180.02562 * 21 20 19 41 41 H 1.08002 * 120.07797 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5973 2.0926 -1.2160 5 6 2.2906 1.4935 -2.4123 6 1 3.0363 0.7243 -2.2752 7 6 1.9727 1.9270 -3.6820 8 7 1.0648 2.8638 -3.8490 9 14 2.8316 1.1837 -5.1651 10 1 2.5688 -0.2772 -5.2086 11 1 2.3153 1.8171 -6.4050 12 1 4.2938 1.4207 -5.0606 13 6 1.5781 2.0995 1.2052 14 6 2.2403 1.4792 2.4372 15 6 1.7868 2.2118 3.6736 16 6 1.2375 1.5417 4.6770 17 6 0.7922 2.2604 5.8895 18 6 0.2132 1.5582 6.9472 19 6 -0.1999 2.2348 8.0764 20 6 -0.0415 3.6066 8.1612 21 6 0.5317 4.3086 7.1161 22 6 0.9490 3.6439 5.9813 23 1 -0.3633 0.5061 0.8944 24 1 -0.3634 0.5215 -0.8855 25 1 -0.3634 -1.0277 -0.0089 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 0.5181 1.9971 -1.3357 29 1 1.8617 3.1469 -1.1331 30 1 0.8415 3.1690 -4.7422 31 1 0.4948 2.0218 1.2972 32 1 1.8621 3.1491 1.1298 33 1 3.3236 1.5568 2.3452 34 1 1.9563 0.4295 2.5126 35 1 1.9093 3.2826 3.7422 36 1 1.1147 0.4710 4.6082 37 1 0.0887 0.4873 6.8820 38 1 -0.6523 1.6931 8.8939 39 1 -0.3669 4.1317 9.0471 40 1 0.6529 5.3794 7.1885 41 1 1.3968 4.1930 5.1662 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323764399.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:57 Heat of formation + Delta-G solvation = 33.004357 kcal Electronic energy + Delta-G solvation = -18213.544094 eV Core-core repulsion = 15479.183694 eV Total energy + Delta-G solvation = -2734.360400 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.30649 -37.61287 -35.02576 -32.65685 -31.44385 -31.07252 -29.40540 -28.13731 -25.83321 -23.65037 -23.18191 -22.61189 -21.44090 -19.28187 -19.02643 -17.19559 -16.16747 -15.59028 -15.35134 -15.11225 -14.73326 -14.25540 -14.09696 -13.52617 -13.22837 -13.05308 -12.92137 -12.86360 -12.27243 -11.88656 -11.65745 -11.58742 -11.26335 -11.10625 -10.96297 -10.93178 -10.68019 -10.55591 -10.39625 -10.14720 -9.96126 -9.60902 -9.18182 -9.10055 -8.40411 -8.10170 -7.14093 -6.00079 -4.01086 0.85367 1.26302 2.49875 3.34678 3.38655 3.41694 3.81655 4.43585 4.60126 4.69329 4.81103 4.92777 5.06975 5.16868 5.30664 5.34127 5.35200 5.50996 5.64567 5.76200 5.82903 5.84746 5.91046 5.98390 6.04823 6.17036 6.21801 6.28058 6.35939 6.39708 6.45955 6.58700 6.69377 6.73300 6.83981 6.89203 6.95164 7.35006 7.47932 7.84306 8.14245 8.24311 8.59954 9.07044 9.62907 11.10543 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.045007 B = 0.003051 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.979282 B = 9176.416899 C = 9424.143212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.060 3.940 3 N -0.537 5.537 4 C 0.188 3.812 5 C -0.505 4.505 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.056 3.944 14 C -0.091 4.091 15 C -0.115 4.115 16 C -0.146 4.146 17 C -0.042 4.042 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.131 4.131 21 C -0.117 4.117 22 C -0.121 4.121 23 H 0.045 0.955 24 H 0.067 0.933 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.003 0.997 29 H 0.023 0.977 30 H 0.261 0.739 31 H 0.029 0.971 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.984 -1.096 21.083 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.069 4.069 3 N -0.260 5.260 4 C 0.063 3.937 5 C -0.543 4.543 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.073 4.073 14 C -0.129 4.129 15 C -0.134 4.134 16 C -0.164 4.164 17 C -0.042 4.042 18 C -0.135 4.135 19 C -0.138 4.138 20 C -0.149 4.149 21 C -0.135 4.135 22 C -0.138 4.138 23 H 0.064 0.936 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.021 0.979 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.555 -0.994 20.923 21.004 hybrid contribution -0.589 -0.238 -0.862 1.071 sum -2.144 -1.231 20.061 20.213 Atomic orbital electron populations 1.22387 0.99559 1.00878 1.01989 1.21980 0.92018 0.91676 1.01207 1.62341 1.59182 1.01917 1.02585 1.19775 0.94794 0.93664 0.85449 1.21127 1.21703 1.21366 0.90152 0.91990 1.24987 0.95332 0.95296 0.99027 1.69950 1.32203 1.29322 1.22511 0.86583 0.79922 0.79252 0.81776 1.20314 1.21418 1.20193 1.21994 0.96862 0.98178 0.90249 1.20787 1.01419 0.98989 0.91658 1.23539 0.95450 0.99923 0.94470 1.21622 1.02439 0.99197 0.93125 1.19161 0.97599 0.93194 0.94267 1.21273 0.99052 0.99810 0.93323 1.21073 1.00157 0.94580 0.97954 1.21166 1.00343 0.94463 0.98884 1.21089 0.98798 0.99871 0.93763 1.21374 1.00334 0.93869 0.98256 0.93636 0.91367 0.93543 0.90227 0.92953 0.97944 0.95845 0.92935 0.95314 0.91598 0.89960 0.91504 0.87009 0.86489 0.85990 0.86194 0.86340 0.86093 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.45 9.26 37.15 0.34 -3.11 16 2 C 0.06 1.15 5.67 -3.83 -0.02 1.13 16 3 N -0.54 -11.46 4.69 -236.08 -1.11 -12.57 16 4 C 0.19 4.88 4.54 -4.98 -0.02 4.85 16 5 C -0.50 -14.16 8.39 -34.44 -0.29 -14.45 16 6 H 0.06 1.73 7.39 -52.49 -0.39 1.34 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 9 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.06 0.99 4.72 -3.82 -0.02 0.97 16 14 C -0.09 -1.30 5.59 -27.88 -0.16 -1.46 16 15 C -0.12 -1.44 8.94 -36.22 -0.32 -1.77 16 16 C -0.15 -1.73 9.52 -37.57 -0.36 -2.09 16 17 C -0.04 -0.49 5.87 -105.01 -0.62 -1.11 16 18 C -0.12 -1.21 9.79 -39.19 -0.38 -1.59 16 19 C -0.12 -1.11 10.03 -39.64 -0.40 -1.51 16 20 C -0.13 -1.19 10.04 -39.51 -0.40 -1.59 16 21 C -0.12 -1.14 10.03 -39.64 -0.40 -1.54 16 22 C -0.12 -1.33 9.40 -39.19 -0.37 -1.69 16 23 H 0.04 0.77 6.33 -51.93 -0.33 0.45 16 24 H 0.07 1.45 6.28 -51.93 -0.33 1.12 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 1.68 6.98 -51.93 -0.36 1.32 16 27 H 0.05 0.88 6.40 -51.93 -0.33 0.54 16 28 H 0.00 0.08 6.02 -51.93 -0.31 -0.24 16 29 H 0.02 0.65 7.91 -51.93 -0.41 0.24 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.03 0.52 6.06 -51.93 -0.31 0.20 16 32 H 0.07 1.19 7.92 -51.93 -0.41 0.77 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 0.93 6.19 -51.93 -0.32 0.61 16 35 H 0.11 1.30 6.04 -52.48 -0.32 0.99 16 36 H 0.12 1.29 7.87 -52.49 -0.41 0.87 16 37 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.13 1.26 6.17 -52.49 -0.32 0.94 16 LS Contribution 330.45 15.07 4.98 4.98 Total: -1.00 -29.99 330.45 -10.15 -40.14 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.23 Total: 0.31 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -3.50 Total: -23.48 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.37 Total: -38.62 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.99 -10.15 -40.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323764399.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.141 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds