Wall clock time and date at job start Mon Mar 30 2020 06:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46896 * 109.47374 * 2 1 4 4 C 1.46894 * 111.00012 * 297.54153 * 3 2 1 5 5 C 1.50697 * 109.47166 * 292.79065 * 4 3 2 6 6 H 1.07997 * 120.00061 * 354.99696 * 5 4 3 7 7 C 1.37879 * 119.99771 * 174.98455 * 5 4 3 8 8 N 1.31516 * 120.00285 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99698 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46940 * 60.00524 * 9 7 5 11 11 H 1.48498 * 109.46840 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47201 * 300.00439 * 9 7 5 13 13 C 1.46904 * 110.99974 * 61.49594 * 3 2 1 14 14 C 1.53004 * 109.47106 * 66.04311 * 13 3 2 15 15 C 1.50698 * 109.46925 * 180.02562 * 14 13 3 16 16 C 1.32570 * 119.99701 * 125.00533 * 15 14 13 17 17 C 1.47811 * 119.99485 * 180.02562 * 16 15 14 18 18 C 1.39538 * 120.13887 * 179.97438 * 17 16 15 19 19 C 1.37973 * 119.85960 * 179.97438 * 18 17 16 20 20 C 1.38346 * 120.13984 * 0.02562 * 19 18 17 21 21 C 1.38337 * 120.28640 * 359.97438 * 20 19 18 22 22 C 1.37974 * 120.14415 * 0.02562 * 21 20 19 23 23 H 1.08999 * 109.47149 * 299.50584 * 1 2 3 24 24 H 1.09002 * 109.47217 * 59.50417 * 1 2 3 25 25 H 1.09006 * 109.47461 * 179.50348 * 1 2 3 26 26 H 1.09001 * 109.47164 * 239.99704 * 2 1 3 27 27 H 1.09000 * 109.46756 * 119.99953 * 2 1 3 28 28 H 1.09000 * 109.47172 * 52.79880 * 4 3 2 29 29 H 1.09005 * 109.46852 * 172.79323 * 4 3 2 30 30 H 0.97000 * 119.99862 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.46890 * 306.04697 * 13 3 2 32 32 H 1.08999 * 109.47129 * 186.04348 * 13 3 2 33 33 H 1.09000 * 109.46931 * 60.00411 * 14 13 3 34 34 H 1.08999 * 109.47156 * 300.00020 * 14 13 3 35 35 H 1.08005 * 120.00096 * 305.00295 * 15 14 13 36 36 H 1.07994 * 119.99812 * 359.97438 * 16 15 14 37 37 H 1.08009 * 120.07112 * 359.97438 * 18 17 16 38 38 H 1.07997 * 119.93147 * 179.72096 * 19 18 17 39 39 H 1.08000 * 119.85780 * 179.97438 * 20 19 18 40 40 H 1.08001 * 119.93028 * 180.02562 * 21 20 19 41 41 H 1.08002 * 120.07797 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5973 2.0926 -1.2160 5 6 2.2906 1.4935 -2.4123 6 1 3.0363 0.7243 -2.2752 7 6 1.9727 1.9270 -3.6820 8 7 1.0648 2.8638 -3.8490 9 14 2.8316 1.1837 -5.1651 10 1 2.5688 -0.2772 -5.2086 11 1 2.3153 1.8171 -6.4050 12 1 4.2938 1.4207 -5.0606 13 6 1.5781 2.0995 1.2052 14 6 2.2403 1.4792 2.4372 15 6 1.7868 2.2118 3.6736 16 6 1.2375 1.5417 4.6770 17 6 0.7922 2.2604 5.8895 18 6 0.2132 1.5582 6.9472 19 6 -0.1999 2.2348 8.0764 20 6 -0.0415 3.6066 8.1612 21 6 0.5317 4.3086 7.1161 22 6 0.9490 3.6439 5.9813 23 1 -0.3633 0.5061 0.8944 24 1 -0.3634 0.5215 -0.8855 25 1 -0.3634 -1.0277 -0.0089 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 0.5181 1.9971 -1.3357 29 1 1.8617 3.1469 -1.1331 30 1 0.8415 3.1690 -4.7422 31 1 0.4948 2.0218 1.2972 32 1 1.8621 3.1491 1.1298 33 1 3.3236 1.5568 2.3452 34 1 1.9563 0.4295 2.5126 35 1 1.9093 3.2826 3.7422 36 1 1.1147 0.4710 4.6082 37 1 0.0887 0.4873 6.8820 38 1 -0.6523 1.6931 8.8939 39 1 -0.3669 4.1317 9.0471 40 1 0.6529 5.3794 7.1885 41 1 1.3968 4.1930 5.1662 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323764399.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:57 Heat of formation + Delta-G solvation = 17.227649 kcal Electronic energy + Delta-G solvation = -18214.228223 eV Core-core repulsion = 15479.183694 eV Total energy + Delta-G solvation = -2735.044530 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.07560 -39.19256 -36.12203 -34.70062 -32.54830 -31.81465 -31.02187 -29.55187 -27.48216 -25.17469 -24.50649 -23.62288 -22.55891 -20.64608 -20.19348 -18.35961 -17.95380 -16.93449 -16.74194 -16.27651 -16.18668 -15.56386 -15.17257 -14.81352 -14.44583 -14.26864 -14.06073 -13.89188 -13.73095 -13.45417 -13.12293 -13.02662 -12.73934 -12.60993 -12.47639 -12.33250 -12.07297 -11.93300 -11.80726 -11.69556 -11.34512 -11.14780 -10.95444 -10.58116 -9.83986 -8.98482 -8.88743 -8.17893 -6.27684 0.03492 0.52274 1.41146 1.44323 1.52089 1.62684 2.41465 3.03876 3.14309 3.35625 3.82623 3.91385 4.08740 4.14682 4.26697 4.29398 4.39950 4.41971 4.50564 4.53468 4.60503 4.65030 4.72430 4.75380 4.94179 5.02003 5.05742 5.10204 5.18164 5.21956 5.25463 5.39080 5.43764 5.53519 5.57135 5.63467 5.69584 5.76592 5.94610 6.10490 6.13651 6.40068 6.70425 6.89523 7.41797 8.92516 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.045007 B = 0.003051 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.979282 B = 9176.416899 C = 9424.143212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.059 3.941 3 N -0.545 5.545 4 C 0.203 3.797 5 C -0.520 4.520 6 H 0.061 0.939 7 C 0.001 3.999 8 N -0.936 5.936 9 Si 0.967 3.033 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.057 3.943 14 C -0.075 4.075 15 C -0.133 4.133 16 C -0.131 4.131 17 C -0.069 4.069 18 C -0.124 4.124 19 C -0.125 4.125 20 C -0.131 4.131 21 C -0.128 4.128 22 C -0.136 4.136 23 H 0.057 0.943 24 H 0.029 0.971 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.087 0.913 28 H -0.021 1.021 29 H -0.006 1.006 30 H 0.263 0.737 31 H 0.026 0.974 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.127 0.873 37 H 0.136 0.864 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.865 -2.322 22.811 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.069 4.069 3 N -0.268 5.268 4 C 0.077 3.923 5 C -0.558 4.558 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.577 5.577 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.194 1.194 13 C -0.071 4.071 14 C -0.112 4.112 15 C -0.152 4.152 16 C -0.149 4.149 17 C -0.069 4.069 18 C -0.142 4.142 19 C -0.143 4.143 20 C -0.149 4.149 21 C -0.146 4.146 22 C -0.154 4.154 23 H 0.076 0.924 24 H 0.048 0.952 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.105 0.895 28 H -0.004 1.004 29 H 0.012 0.988 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.133 0.867 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.156 0.844 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.430 -2.230 22.676 22.831 hybrid contribution -0.682 0.170 -1.242 1.428 sum -2.113 -2.060 21.434 21.636 Atomic orbital electron populations 1.22270 0.98714 1.02161 1.00659 1.22030 0.92724 0.90312 1.01810 1.62250 1.59616 1.02900 1.02080 1.19417 0.93094 0.92426 0.87408 1.21437 1.21779 1.21370 0.91254 0.92065 1.25899 0.95955 0.95611 1.02226 1.70084 1.33629 1.30661 1.23303 0.85472 0.78871 0.78742 0.77751 1.19204 1.20950 1.19380 1.22044 0.97052 0.97722 0.90253 1.20585 1.00855 0.99247 0.90526 1.23354 0.97453 1.00110 0.94236 1.21776 1.00549 0.99692 0.92843 1.19304 0.99183 0.93651 0.94787 1.21540 0.98651 1.00698 0.93311 1.21430 0.99689 0.94924 0.98270 1.21550 0.99226 0.94719 0.99399 1.21384 0.98637 1.00969 0.93564 1.21559 1.00807 0.94049 0.98985 0.92431 0.95176 0.90849 0.92348 0.89494 1.00354 0.98815 0.92793 0.95549 0.92671 0.90299 0.90618 0.86741 0.85481 0.84598 0.83753 0.83891 0.84375 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.45 9.26 71.98 0.67 -5.78 16 2 C 0.06 2.25 5.67 86.30 0.49 2.74 16 3 N -0.55 -23.64 4.69 -900.81 -4.23 -27.86 16 4 C 0.20 10.96 4.54 85.56 0.39 11.35 16 5 C -0.52 -29.85 8.39 25.60 0.21 -29.64 16 6 H 0.06 3.45 7.39 -2.91 -0.02 3.43 16 7 C 0.00 0.04 5.46 84.65 0.46 0.51 16 8 N -0.94 -57.11 13.29 21.45 0.28 -56.83 16 9 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 C 0.06 2.06 4.72 86.30 0.41 2.47 16 14 C -0.07 -2.07 5.59 29.85 0.17 -1.90 16 15 C -0.13 -3.23 8.94 24.53 0.22 -3.01 16 16 C -0.13 -2.92 9.52 23.65 0.23 -2.69 16 17 C -0.07 -1.52 5.87 -20.12 -0.12 -1.64 16 18 C -0.12 -2.32 9.79 22.52 0.22 -2.10 16 19 C -0.13 -2.00 10.03 22.23 0.22 -1.78 16 20 C -0.13 -2.06 10.04 22.32 0.22 -1.84 16 21 C -0.13 -2.28 10.03 22.23 0.22 -2.06 16 22 C -0.14 -2.89 9.40 22.52 0.21 -2.68 16 23 H 0.06 1.91 6.33 -2.39 -0.02 1.89 16 24 H 0.03 1.30 6.28 -2.39 -0.01 1.28 16 25 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 26 H 0.06 2.46 6.98 -2.39 -0.02 2.44 16 27 H 0.09 2.71 6.40 -2.39 -0.02 2.70 16 28 H -0.02 -1.23 6.02 -2.39 -0.01 -1.25 16 29 H -0.01 -0.37 7.91 -2.38 -0.02 -0.39 16 30 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.03 0.96 6.06 -2.39 -0.01 0.95 16 32 H 0.05 2.06 7.92 -2.39 -0.02 2.05 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.08 1.94 6.19 -2.39 -0.01 1.93 16 35 H 0.11 2.68 6.04 -2.91 -0.02 2.66 16 36 H 0.13 2.52 7.87 -2.91 -0.02 2.49 16 37 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 38 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 39 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 41 H 0.13 2.52 6.17 -2.91 -0.02 2.50 16 Total: -1.00 -65.60 330.45 3.30 -62.30 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.99 Total: 13.66 kcal Atomic # 6 Polarization: -42.28 SS G_CDS: 4.22 Total: -38.05 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -3.94 Total: -84.69 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -65.60 3.30 -62.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323764399.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.523 kcal (2) G-P(sol) polarization free energy of solvation -65.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds