Wall clock time and date at job start Mon Mar 30 2020 06:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 120.00150 * 2 1 4 4 C 1.52995 * 109.47257 * 124.99984 * 3 2 1 5 5 C 1.53007 * 109.47184 * 180.02562 * 4 3 2 6 6 N 1.46896 * 109.47220 * 180.02562 * 5 4 3 7 7 C 1.46904 * 110.99955 * 293.95011 * 6 5 4 8 8 C 1.46896 * 111.00359 * 169.99629 * 6 5 4 9 9 C 1.50688 * 109.47627 * 189.99614 * 8 6 5 10 10 C 1.38636 * 119.75264 * 269.72840 * 9 8 6 11 11 C 1.37621 * 120.25020 * 179.71837 * 10 9 8 12 12 C 1.40721 * 119.74404 * 0.57096 * 11 10 9 13 13 C 1.41389 * 120.24223 * 179.68082 * 12 11 10 14 14 H 1.07997 * 119.99671 * 204.40123 * 13 12 11 15 15 C 1.39937 * 120.00147 * 24.40242 * 13 12 11 16 16 N 1.30819 * 120.00256 * 17.85795 * 15 13 12 17 17 Si 1.86802 * 119.99957 * 197.85504 * 15 13 12 18 18 H 1.48501 * 109.47471 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47291 * 120.00150 * 17 15 13 20 20 H 1.48500 * 109.47330 * 239.99798 * 17 15 13 21 21 C 1.40719 * 119.50939 * 359.70604 * 12 11 10 22 22 C 1.37611 * 119.74507 * 359.97438 * 21 12 11 23 23 H 1.08004 * 119.99833 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.00289 * 180.02562 * 1 2 3 25 25 H 1.07995 * 120.00213 * 179.97438 * 2 1 3 26 26 H 1.09007 * 109.47027 * 5.00026 * 3 2 1 27 27 H 1.08996 * 109.47281 * 244.99970 * 3 2 1 28 28 H 1.08995 * 109.47406 * 59.99892 * 4 3 2 29 29 H 1.09006 * 109.46895 * 299.99609 * 4 3 2 30 30 H 1.08995 * 109.47384 * 59.99454 * 5 4 3 31 31 H 1.09005 * 109.46199 * 299.99826 * 5 4 3 32 32 H 1.09000 * 109.46926 * 59.99516 * 7 6 5 33 33 H 1.08995 * 109.47199 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.46990 * 300.00160 * 7 6 5 35 35 H 1.09002 * 109.46861 * 309.99944 * 8 6 5 36 36 H 1.09006 * 109.47080 * 69.99528 * 8 6 5 37 37 H 1.08001 * 119.87580 * 359.97438 * 10 9 8 38 38 H 1.07998 * 120.12513 * 180.27840 * 11 10 9 39 39 H 0.97007 * 120.00612 * 179.97438 * 16 15 13 40 40 H 1.08000 * 120.12440 * 179.97438 * 21 12 11 41 41 H 1.08001 * 119.87473 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7997 2.6584 1.1819 6 7 4.7329 2.6851 2.3161 7 6 4.0083 2.6994 3.5939 8 6 5.6488 3.8293 2.2175 9 6 6.7384 3.6910 3.2491 10 6 6.5653 4.2396 4.5105 11 6 7.5513 4.1144 5.4623 12 6 8.7437 3.4367 5.1474 13 6 9.7664 3.3077 6.1151 14 1 10.7898 3.1607 5.8029 15 6 9.4526 3.3704 7.4774 16 7 8.2177 3.1972 7.8729 17 14 10.7971 3.7014 8.7313 18 1 12.0977 3.8605 8.0323 19 1 10.4819 4.9455 9.4784 20 1 10.8807 2.5621 9.6800 21 6 8.9108 2.8888 3.8620 22 6 7.9087 3.0204 2.9281 23 1 -0.5400 0.9354 0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9352 0.0004 26 1 1.3586 2.1317 0.0896 27 1 2.6213 1.4026 -0.9313 28 1 3.7400 0.5066 1.0921 29 1 2.4772 1.2357 2.1130 30 1 3.0945 3.4847 1.2716 31 1 4.3574 2.7562 0.2505 32 1 3.3899 1.8051 3.6709 33 1 4.7229 2.7195 4.4166 34 1 3.3742 3.5847 3.6421 35 1 6.0921 3.8551 1.2220 36 1 5.0969 4.7527 2.3935 37 1 5.6514 4.7638 4.7483 38 1 7.4124 4.5387 6.4457 39 1 8.0002 3.2404 8.8173 40 1 9.8221 2.3670 3.6095 41 1 8.0346 2.6004 1.9412 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343552380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:53 Heat of formation + Delta-G solvation = 24.395929 kcal Electronic energy + Delta-G solvation = -18423.012109 eV Core-core repulsion = 15688.278419 eV Total energy + Delta-G solvation = -2734.733690 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.28829 -36.98351 -35.40624 -33.65197 -31.54250 -29.87974 -29.28051 -27.15001 -26.48006 -24.47380 -22.34287 -20.94929 -20.51990 -19.92829 -19.61983 -17.26185 -15.94172 -15.40438 -15.18492 -14.78954 -14.72301 -14.06452 -13.92851 -13.57614 -13.16617 -12.92084 -12.42791 -12.32708 -11.94866 -11.79398 -11.62192 -11.52387 -11.22979 -11.16122 -10.99718 -10.95427 -10.86870 -10.56130 -10.33986 -10.27296 -9.55366 -9.44469 -9.34609 -9.10234 -7.89001 -7.38923 -7.24729 -6.73549 -4.31562 2.11880 2.75637 3.08171 3.11948 3.13752 3.19523 3.94857 4.31879 4.68188 4.80475 4.89755 5.12746 5.30396 5.39554 5.51936 5.63630 5.72591 5.73433 5.77959 5.80223 5.87322 6.00070 6.10665 6.18674 6.28838 6.32702 6.41984 6.45360 6.47110 6.55754 6.62179 6.98052 7.10512 7.30062 7.41623 7.51924 7.55128 7.66070 7.93247 8.09161 8.18627 8.34170 8.67661 8.93147 9.01647 10.20788 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.040438 B = 0.003351 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.256679 B = 8352.647451 C = 8591.671123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.095 4.095 4 C -0.112 4.112 5 C 0.054 3.946 6 N -0.536 5.536 7 C 0.024 3.976 8 C 0.120 3.880 9 C -0.207 4.207 10 C -0.094 4.094 11 C -0.167 4.167 12 C 0.111 3.889 13 C -0.463 4.463 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.793 5.793 17 Si 0.906 3.094 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.275 1.275 21 C -0.228 4.228 22 C -0.070 4.070 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.014 0.986 35 H 0.063 0.937 36 H 0.022 0.978 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.279 0.721 40 H 0.090 0.910 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 -1.658 -9.331 13.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.164 4.164 3 C -0.132 4.132 4 C -0.149 4.149 5 C -0.074 4.074 6 N -0.259 5.259 7 C -0.124 4.124 8 C -0.006 4.006 9 C -0.208 4.208 10 C -0.113 4.113 11 C -0.186 4.186 12 C 0.109 3.891 13 C -0.493 4.493 14 H 0.095 0.905 15 C -0.142 4.142 16 N -0.419 5.419 17 Si 0.730 3.270 18 H -0.184 1.184 19 H -0.198 1.198 20 H -0.200 1.200 21 C -0.248 4.248 22 C -0.088 4.088 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.126 0.874 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.033 0.967 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.100 0.900 38 H 0.134 0.866 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.068 -2.094 -9.135 13.755 hybrid contribution -0.039 0.736 0.753 1.053 sum -10.106 -1.359 -8.382 13.200 Atomic orbital electron populations 1.23821 0.96008 1.01626 1.02547 1.23016 0.95988 0.98755 0.98664 1.20765 0.98194 0.95068 0.99208 1.21546 0.97431 0.98322 0.97642 1.22128 0.94219 0.96172 0.94922 1.62099 1.18217 1.43987 1.01645 1.22437 0.97873 0.99012 0.93114 1.20744 0.92199 0.89604 0.98091 1.18849 0.96054 1.10674 0.95271 1.20517 0.97481 0.99944 0.93373 1.21276 0.95306 1.03150 0.98858 1.17622 0.92341 0.87816 0.91324 1.19619 0.95393 1.43982 0.90256 0.90490 1.25901 0.96188 0.92265 0.99820 1.69840 1.19644 1.34781 1.17591 0.86304 0.81878 0.78734 0.80045 1.18424 1.19762 1.20033 1.20965 0.99535 1.08277 0.96008 1.20318 0.93608 0.97715 0.97191 0.88773 0.88721 0.87383 0.91822 0.90985 0.90960 0.91876 0.95689 0.91292 0.92260 0.89841 0.96740 0.91894 0.96002 0.89974 0.86586 0.91018 0.89153 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.75 14.32 29.01 0.42 -1.34 16 2 C -0.15 -1.37 9.52 -36.02 -0.34 -1.71 16 3 C -0.09 -0.92 5.66 -27.88 -0.16 -1.07 16 4 C -0.11 -1.31 5.12 -26.73 -0.14 -1.45 16 5 C 0.05 0.72 4.96 -3.82 -0.02 0.70 16 6 N -0.54 -9.02 4.75 -244.37 -1.16 -10.18 16 7 C 0.02 0.40 8.98 60.07 0.54 0.93 16 8 C 0.12 2.17 5.11 -4.98 -0.03 2.14 16 9 C -0.21 -4.51 4.91 -104.33 -0.51 -5.03 16 10 C -0.09 -2.19 7.87 -39.66 -0.31 -2.50 16 11 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 12 C 0.11 3.00 5.58 -106.82 -0.60 2.41 16 13 C -0.46 -12.41 9.05 -37.75 -0.34 -12.75 16 14 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 15 C 0.08 1.92 5.14 -17.35 -0.09 1.83 16 16 N -0.79 -20.63 10.95 55.55 0.61 -20.02 16 17 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 18 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 C -0.23 -5.70 9.80 -38.87 -0.38 -6.08 16 22 C -0.07 -1.58 9.67 -39.66 -0.38 -1.97 16 23 H 0.09 0.76 7.84 -52.48 -0.41 0.35 16 24 H 0.09 0.71 8.06 -52.49 -0.42 0.29 16 25 H 0.11 0.96 8.06 -52.49 -0.42 0.54 16 26 H 0.06 0.59 7.79 -51.93 -0.40 0.19 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.78 6.55 -51.93 -0.34 0.43 16 30 H 0.02 0.32 8.12 -51.93 -0.42 -0.10 16 31 H 0.07 0.87 7.93 -51.93 -0.41 0.46 16 32 H 0.06 0.89 6.47 -51.93 -0.34 0.56 16 33 H 0.08 1.63 5.90 -51.93 -0.31 1.32 16 34 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.06 1.06 7.87 -51.93 -0.41 0.65 16 36 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 37 H 0.08 1.75 7.99 -52.49 -0.42 1.33 16 38 H 0.12 3.13 6.16 -52.49 -0.32 2.80 16 39 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 40 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 41 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 334.54 15.07 5.04 5.04 Total: -1.00 -27.16 334.54 -9.93 -37.09 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.71 Total: 4.89 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: -2.68 Total: -30.56 kcal Atomic # 7 Polarization: -29.65 SS G_CDS: -0.55 Total: -30.20 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.16 -9.93 -37.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343552380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.486 kcal (2) G-P(sol) polarization free energy of solvation -27.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds