Wall clock time and date at job start Mon Mar 30 2020 06:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 120.00150 * 2 1 4 4 C 1.52995 * 109.47257 * 124.99984 * 3 2 1 5 5 C 1.53007 * 109.47184 * 180.02562 * 4 3 2 6 6 N 1.46896 * 109.47220 * 180.02562 * 5 4 3 7 7 C 1.46904 * 110.99955 * 293.95011 * 6 5 4 8 8 C 1.46896 * 111.00359 * 169.99629 * 6 5 4 9 9 C 1.50688 * 109.47627 * 189.99614 * 8 6 5 10 10 C 1.38636 * 119.75264 * 269.72840 * 9 8 6 11 11 C 1.37621 * 120.25020 * 179.71837 * 10 9 8 12 12 C 1.40721 * 119.74404 * 0.57096 * 11 10 9 13 13 C 1.41389 * 120.24223 * 179.68082 * 12 11 10 14 14 H 1.07997 * 119.99671 * 204.40123 * 13 12 11 15 15 C 1.39937 * 120.00147 * 24.40242 * 13 12 11 16 16 N 1.30819 * 120.00256 * 17.85795 * 15 13 12 17 17 Si 1.86802 * 119.99957 * 197.85504 * 15 13 12 18 18 H 1.48501 * 109.47471 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47291 * 120.00150 * 17 15 13 20 20 H 1.48500 * 109.47330 * 239.99798 * 17 15 13 21 21 C 1.40719 * 119.50939 * 359.70604 * 12 11 10 22 22 C 1.37611 * 119.74507 * 359.97438 * 21 12 11 23 23 H 1.08004 * 119.99833 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.00289 * 180.02562 * 1 2 3 25 25 H 1.07995 * 120.00213 * 179.97438 * 2 1 3 26 26 H 1.09007 * 109.47027 * 5.00026 * 3 2 1 27 27 H 1.08996 * 109.47281 * 244.99970 * 3 2 1 28 28 H 1.08995 * 109.47406 * 59.99892 * 4 3 2 29 29 H 1.09006 * 109.46895 * 299.99609 * 4 3 2 30 30 H 1.08995 * 109.47384 * 59.99454 * 5 4 3 31 31 H 1.09005 * 109.46199 * 299.99826 * 5 4 3 32 32 H 1.09000 * 109.46926 * 59.99516 * 7 6 5 33 33 H 1.08995 * 109.47199 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.46990 * 300.00160 * 7 6 5 35 35 H 1.09002 * 109.46861 * 309.99944 * 8 6 5 36 36 H 1.09006 * 109.47080 * 69.99528 * 8 6 5 37 37 H 1.08001 * 119.87580 * 359.97438 * 10 9 8 38 38 H 1.07998 * 120.12513 * 180.27840 * 11 10 9 39 39 H 0.97007 * 120.00612 * 179.97438 * 16 15 13 40 40 H 1.08000 * 120.12440 * 179.97438 * 21 12 11 41 41 H 1.08001 * 119.87473 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7997 2.6584 1.1819 6 7 4.7329 2.6851 2.3161 7 6 4.0083 2.6994 3.5939 8 6 5.6488 3.8293 2.2175 9 6 6.7384 3.6910 3.2491 10 6 6.5653 4.2396 4.5105 11 6 7.5513 4.1144 5.4623 12 6 8.7437 3.4367 5.1474 13 6 9.7664 3.3077 6.1151 14 1 10.7898 3.1607 5.8029 15 6 9.4526 3.3704 7.4774 16 7 8.2177 3.1972 7.8729 17 14 10.7971 3.7014 8.7313 18 1 12.0977 3.8605 8.0323 19 1 10.4819 4.9455 9.4784 20 1 10.8807 2.5621 9.6800 21 6 8.9108 2.8888 3.8620 22 6 7.9087 3.0204 2.9281 23 1 -0.5400 0.9354 0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9352 0.0004 26 1 1.3586 2.1317 0.0896 27 1 2.6213 1.4026 -0.9313 28 1 3.7400 0.5066 1.0921 29 1 2.4772 1.2357 2.1130 30 1 3.0945 3.4847 1.2716 31 1 4.3574 2.7562 0.2505 32 1 3.3899 1.8051 3.6709 33 1 4.7229 2.7195 4.4166 34 1 3.3742 3.5847 3.6421 35 1 6.0921 3.8551 1.2220 36 1 5.0969 4.7527 2.3935 37 1 5.6514 4.7638 4.7483 38 1 7.4124 4.5387 6.4457 39 1 8.0002 3.2404 8.8173 40 1 9.8221 2.3670 3.6095 41 1 8.0346 2.6004 1.9412 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343552380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:52 Heat of formation + Delta-G solvation = 11.456931 kcal Electronic energy + Delta-G solvation = -18423.573186 eV Core-core repulsion = 15688.278419 eV Total energy + Delta-G solvation = -2735.294767 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88100 -38.41183 -36.42298 -35.41664 -32.80454 -31.36471 -31.16968 -28.75504 -27.67782 -25.95842 -23.72684 -22.78566 -21.69649 -21.40168 -20.57667 -19.20077 -17.18719 -16.90530 -16.44260 -16.28681 -15.84557 -15.66710 -15.37546 -14.85611 -14.62366 -14.22449 -13.98463 -13.79632 -13.49768 -13.15452 -12.96929 -12.80041 -12.74092 -12.62656 -12.50632 -12.26038 -12.19927 -11.95011 -11.70414 -11.47696 -11.28012 -11.19662 -10.98714 -10.17232 -9.36033 -9.22801 -9.06009 -8.61917 -6.31071 0.95827 1.18547 1.37816 1.43617 1.50104 1.53415 2.21361 2.68462 3.21857 3.81500 3.94136 4.05434 4.19651 4.30865 4.34114 4.45822 4.52465 4.53802 4.61182 4.67460 4.71801 4.73202 4.83168 4.89695 4.95270 5.06772 5.09554 5.14108 5.18427 5.27819 5.40204 5.43435 5.50623 5.73721 5.79162 5.93201 5.99052 6.12685 6.14350 6.30395 6.37331 6.42629 6.73199 6.96816 7.07064 8.34829 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.040438 B = 0.003351 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.256679 B = 8352.647451 C = 8591.671123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C -0.088 4.088 4 C -0.105 4.105 5 C 0.056 3.944 6 N -0.550 5.550 7 C 0.028 3.972 8 C 0.124 3.876 9 C -0.194 4.194 10 C -0.094 4.094 11 C -0.191 4.191 12 C 0.078 3.922 13 C -0.502 4.502 14 H 0.073 0.927 15 C 0.034 3.966 16 N -0.826 5.826 17 Si 0.982 3.018 18 H -0.259 1.259 19 H -0.264 1.264 20 H -0.266 1.266 21 C -0.245 4.245 22 C -0.073 4.073 23 H 0.100 0.900 24 H 0.104 0.896 25 H 0.109 0.891 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.026 0.974 35 H 0.081 0.919 36 H 0.031 0.969 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.287 0.713 40 H 0.094 0.906 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.325 -1.605 -10.573 15.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.180 4.180 3 C -0.126 4.126 4 C -0.143 4.143 5 C -0.072 4.072 6 N -0.274 5.274 7 C -0.120 4.120 8 C -0.002 4.002 9 C -0.196 4.196 10 C -0.112 4.112 11 C -0.210 4.210 12 C 0.076 3.924 13 C -0.532 4.532 14 H 0.091 0.909 15 C -0.180 4.180 16 N -0.452 5.452 17 Si 0.802 3.198 18 H -0.182 1.182 19 H -0.189 1.189 20 H -0.190 1.190 21 C -0.265 4.265 22 C -0.092 4.092 23 H 0.118 0.882 24 H 0.122 0.878 25 H 0.127 0.873 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.044 0.956 35 H 0.100 0.900 36 H 0.049 0.951 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.112 0.888 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.203 -2.046 -10.398 15.422 hybrid contribution 0.164 0.688 1.003 1.227 sum -11.039 -1.359 -9.396 14.560 Atomic orbital electron populations 1.24001 0.95897 1.02448 1.01251 1.23070 0.96369 0.98741 0.99839 1.20695 0.97866 0.95489 0.98505 1.21467 0.97377 0.97092 0.98338 1.22202 0.93940 0.97259 0.93761 1.62009 1.19386 1.43314 1.02712 1.22343 0.97207 1.00314 0.92116 1.20689 0.91510 0.90572 0.97475 1.19292 0.96761 1.08085 0.95435 1.20719 0.97262 0.99721 0.93543 1.21240 0.96360 1.04465 0.98972 1.17963 0.93068 0.88885 0.92462 1.19844 0.95312 1.46431 0.91625 0.90910 1.26750 0.98655 0.91328 1.01296 1.69891 1.21520 1.35319 1.18499 0.85175 0.78509 0.78922 0.77172 1.18248 1.18852 1.19042 1.21169 1.00554 1.08678 0.96080 1.20635 0.93219 0.97399 0.97908 0.88201 0.87751 0.87276 0.91231 0.90236 0.91974 0.92569 0.94720 0.90157 0.90879 0.93214 0.95583 0.90042 0.95100 0.88310 0.88397 0.90258 0.88815 0.86865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.99 14.32 67.78 0.97 -2.01 16 2 C -0.16 -2.70 9.52 25.65 0.24 -2.45 16 3 C -0.09 -1.47 5.66 29.85 0.17 -1.30 16 4 C -0.10 -2.22 5.12 30.60 0.16 -2.06 16 5 C 0.06 1.32 4.96 86.31 0.43 1.74 16 6 N -0.55 -17.21 4.75 -927.06 -4.41 -21.61 16 7 C 0.03 0.90 8.98 127.69 1.15 2.05 16 8 C 0.12 4.16 5.11 85.55 0.44 4.59 16 9 C -0.19 -8.26 4.91 -19.68 -0.10 -8.36 16 10 C -0.09 -4.37 7.87 22.22 0.17 -4.20 16 11 C -0.19 -10.30 8.70 22.73 0.20 -10.10 16 12 C 0.08 4.38 5.58 -21.29 -0.12 4.26 16 13 C -0.50 -28.02 9.05 23.46 0.21 -27.81 16 14 H 0.07 3.94 7.91 -2.91 -0.02 3.91 16 15 C 0.03 1.77 5.14 85.26 0.44 2.21 16 16 N -0.83 -44.33 10.95 21.82 0.24 -44.09 16 17 Si 0.98 39.17 29.59 68.60 2.03 41.20 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 20 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 21 C -0.25 -12.47 9.80 22.73 0.22 -12.25 16 22 C -0.07 -3.27 9.67 22.22 0.21 -3.05 16 23 H 0.10 1.37 7.84 -2.91 -0.02 1.34 16 24 H 0.10 1.34 8.06 -2.91 -0.02 1.31 16 25 H 0.11 1.76 8.06 -2.91 -0.02 1.73 16 26 H 0.07 1.09 7.79 -2.38 -0.02 1.07 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.26 6.55 -2.38 -0.02 1.25 16 30 H 0.03 0.77 8.12 -2.39 -0.02 0.75 16 31 H 0.08 1.73 7.93 -2.38 -0.02 1.72 16 32 H 0.07 2.09 6.47 -2.39 -0.02 2.07 16 33 H 0.05 1.92 5.90 -2.39 -0.01 1.90 16 34 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 2.45 7.87 -2.39 -0.02 2.43 16 36 H 0.03 0.99 8.06 -2.38 -0.02 0.97 16 37 H 0.10 4.18 7.99 -2.91 -0.02 4.16 16 38 H 0.10 5.54 6.16 -2.91 -0.02 5.53 16 39 H 0.29 13.85 8.30 -92.70 -0.77 13.08 16 40 H 0.09 4.55 8.06 -2.91 -0.02 4.52 16 41 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -59.60 334.54 3.63 -55.97 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.97 Total: 27.28 kcal Atomic # 6 Polarization: -63.54 SS G_CDS: 4.80 Total: -58.74 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -4.17 Total: -65.70 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -59.60 3.63 -55.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343552380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.423 kcal (2) G-P(sol) polarization free energy of solvation -59.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds