Wall clock time and date at job start Mon Mar 30 2020 06:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 111.00008 * 2 1 4 4 C 1.50696 * 109.47472 * 66.04129 * 3 2 1 5 5 H 1.08001 * 120.00053 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00107 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99748 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99901 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47007 * 90.00082 * 8 6 4 10 10 H 1.48502 * 109.47018 * 209.99762 * 8 6 4 11 11 H 1.48502 * 109.47578 * 329.99928 * 8 6 4 12 12 C 1.46897 * 111.00645 * 236.03863 * 2 1 3 13 13 C 1.53003 * 109.47304 * 287.81005 * 12 2 1 14 14 H 1.08998 * 109.70827 * 55.61688 * 13 12 2 15 15 C 1.53329 * 109.67417 * 295.08848 * 13 12 2 16 16 C 1.52740 * 108.38349 * 170.43125 * 15 13 12 17 17 C 1.50626 * 110.65246 * 50.91665 * 16 15 13 18 18 C 1.38914 * 117.75602 * 162.13652 * 17 16 15 19 19 C 1.37937 * 120.54090 * 179.64427 * 18 17 16 20 20 C 1.38263 * 119.77403 * 0.29108 * 19 18 17 21 21 C 1.37940 * 119.76797 * 0.13948 * 20 19 18 22 22 C 1.37665 * 122.55880 * 342.59975 * 17 16 15 23 23 C 1.50635 * 122.56727 * 0.31040 * 22 17 16 24 24 H 1.09001 * 109.46998 * 190.58763 * 1 2 3 25 25 H 1.08993 * 109.47551 * 310.59277 * 1 2 3 26 26 H 1.09007 * 109.46653 * 70.59402 * 1 2 3 27 27 H 1.09006 * 109.46793 * 186.04394 * 3 2 1 28 28 H 1.09002 * 109.46673 * 306.04023 * 3 2 1 29 29 H 0.97007 * 119.99797 * 179.97438 * 7 6 4 30 30 H 1.08995 * 109.47533 * 167.80712 * 12 2 1 31 31 H 1.09004 * 109.46597 * 47.80489 * 12 2 1 32 32 H 1.08995 * 109.67946 * 290.15622 * 15 13 12 33 33 H 1.08997 * 109.68012 * 50.70813 * 15 13 12 34 34 H 1.08998 * 109.24654 * 171.42200 * 16 15 13 35 35 H 1.09002 * 109.25248 * 290.88722 * 16 15 13 36 36 H 1.07999 * 119.72717 * 359.92085 * 18 17 16 37 37 H 1.08002 * 120.11000 * 180.31850 * 19 18 17 38 38 H 1.07991 * 120.11327 * 180.11779 * 20 19 18 39 39 H 1.07997 * 119.72287 * 179.91171 * 21 20 19 40 40 H 1.09000 * 109.24744 * 102.71039 * 23 22 17 41 41 H 1.08992 * 109.25221 * 222.17735 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0473 1.2983 5 1 1.0738 1.5117 2.0484 6 6 2.0267 3.3496 1.5283 7 7 2.7119 4.0019 0.6148 8 14 1.5816 4.1875 3.1374 9 1 2.6582 3.9515 4.1327 10 1 1.4291 5.6470 2.9098 11 1 0.3037 3.6301 3.6489 12 6 1.9956 -0.7661 -1.1374 13 6 1.7665 -2.2595 -0.8963 14 1 0.7078 -2.4444 -0.7146 15 6 2.5862 -2.7185 0.3155 16 6 2.1580 -4.1395 0.6765 17 6 2.1918 -5.0293 -0.5384 18 6 2.2045 -6.4033 -0.3338 19 6 2.2279 -7.2713 -1.4055 20 6 2.2450 -6.7708 -2.6942 21 6 2.2413 -5.4067 -2.8992 22 6 2.2195 -4.5308 -1.8213 23 6 2.2252 -3.0539 -2.1174 24 1 -0.3633 -1.0102 0.1888 25 1 -0.3634 0.6686 0.7803 26 1 -0.3633 0.3415 -0.9694 27 1 3.0798 1.3444 -0.1082 28 1 1.5611 1.9273 -0.8310 29 1 2.9859 4.9183 0.7764 30 1 3.0635 -0.5744 -1.2414 31 1 1.4814 -0.4622 -2.0493 32 1 3.6473 -2.7068 0.0665 33 1 2.3991 -2.0533 1.1584 34 1 2.8328 -4.5364 1.4349 35 1 1.1431 -4.1191 1.0736 36 1 2.1914 -6.7950 0.6726 37 1 2.2325 -8.3383 -1.2385 38 1 2.2614 -7.4455 -3.5373 39 1 2.2561 -5.0165 -3.9062 40 1 3.2351 -2.7456 -2.3881 41 1 1.5522 -2.8518 -2.9506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359598847.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:34 Heat of formation + Delta-G solvation = 5.651922 kcal Electronic energy + Delta-G solvation = -19023.488552 eV Core-core repulsion = 16287.942061 eV Total energy + Delta-G solvation = -2735.546491 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.02352 -37.35285 -35.19343 -32.70473 -32.36469 -30.45982 -28.95156 -27.18910 -26.22524 -23.99247 -23.15632 -22.12364 -21.47866 -19.99015 -18.98435 -16.45623 -16.27748 -15.54502 -15.13808 -14.72937 -14.49755 -14.34019 -13.89057 -13.65506 -13.43434 -13.11265 -12.87709 -12.59127 -12.06999 -11.92507 -11.70729 -11.52712 -11.35616 -11.23564 -11.01222 -10.83067 -10.66005 -10.54169 -10.18683 -10.09839 -10.08818 -9.71201 -9.14701 -8.75984 -8.50411 -8.41918 -7.18312 -6.01067 -4.02136 1.35904 1.37961 3.33078 3.38936 3.42439 3.74431 4.43125 4.66809 4.77982 4.94416 4.97447 5.07332 5.09275 5.31897 5.34088 5.39762 5.48742 5.57794 5.68346 5.74199 5.85805 5.92983 6.01455 6.02293 6.09674 6.20560 6.23839 6.29794 6.36046 6.43810 6.48092 6.48862 6.72524 6.76931 6.78278 6.82933 7.04162 7.33080 7.38724 7.82812 8.12374 8.24446 8.58956 9.05867 9.61975 11.09860 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.044666 B = 0.003784 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.729450 B = 7397.532913 C = 7699.355291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.537 5.537 3 C 0.192 3.808 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.060 3.940 13 C -0.079 4.079 14 H 0.070 0.930 15 C -0.107 4.107 16 C -0.083 4.083 17 C -0.070 4.070 18 C -0.124 4.124 19 C -0.128 4.128 20 C -0.128 4.128 21 C -0.123 4.123 22 C -0.069 4.069 23 C -0.078 4.078 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.008 0.992 27 H 0.029 0.971 28 H -0.011 1.011 29 H 0.261 0.739 30 H 0.066 0.934 31 H 0.022 0.978 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.076 0.924 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.238 -19.329 -5.081 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.261 5.261 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.069 4.069 13 C -0.098 4.098 14 H 0.088 0.912 15 C -0.144 4.144 16 C -0.120 4.120 17 C -0.070 4.070 18 C -0.142 4.142 19 C -0.146 4.146 20 C -0.146 4.146 21 C -0.141 4.141 22 C -0.069 4.069 23 C -0.116 4.116 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.026 0.974 27 H 0.047 0.953 28 H 0.007 0.993 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.094 0.906 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.995 -19.362 -4.681 19.945 hybrid contribution -0.434 0.840 -0.062 0.948 sum -1.429 -18.522 -4.743 19.173 Atomic orbital electron populations 1.22255 0.89167 1.00038 0.99825 1.62029 1.06703 1.17519 1.39887 1.19732 0.95294 0.81779 0.96485 1.21174 1.34655 0.96867 1.01731 0.91855 1.24994 0.95377 0.97384 0.96940 1.69964 1.38506 1.11434 1.34018 0.86508 0.78849 0.78425 0.83675 1.20641 1.21379 1.19878 1.22080 0.99998 0.92444 0.92368 1.21116 1.00044 0.94459 0.94143 0.91200 1.21509 0.99040 0.94457 0.99433 1.20553 1.01933 0.95113 0.94364 1.19794 0.98829 0.93838 0.94565 1.21182 1.01148 0.92947 0.98890 1.21012 1.01389 0.99331 0.92895 1.21006 1.01430 0.95292 0.96915 1.21174 1.01082 0.93304 0.98535 1.19709 0.99023 0.95762 0.92377 1.20550 1.02020 0.90214 0.98801 0.93660 0.90695 0.97372 0.95308 0.99326 0.92974 0.91521 0.96011 0.92393 0.89140 0.91102 0.90791 0.86397 0.86496 0.86484 0.86389 0.90557 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.22 60.06 0.55 1.25 16 2 N -0.54 -11.42 4.04 -244.37 -0.99 -12.41 16 3 C 0.19 5.01 4.71 -4.98 -0.02 4.99 16 4 C -0.51 -14.17 8.36 -34.44 -0.29 -14.46 16 5 H 0.06 1.75 7.18 -52.49 -0.38 1.38 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.63 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 12 C 0.06 1.06 4.37 -3.82 -0.02 1.05 16 13 C -0.08 -1.15 2.21 -90.59 -0.20 -1.35 16 14 H 0.07 1.06 6.73 -51.93 -0.35 0.71 16 15 C -0.11 -1.55 5.26 -26.69 -0.14 -1.69 16 16 C -0.08 -1.03 5.67 -28.05 -0.16 -1.19 16 17 C -0.07 -0.89 5.74 -104.62 -0.60 -1.49 16 18 C -0.12 -1.39 9.61 -39.44 -0.38 -1.77 16 19 C -0.13 -1.32 10.05 -39.68 -0.40 -1.72 16 20 C -0.13 -1.33 10.05 -39.68 -0.40 -1.73 16 21 C -0.12 -1.39 9.61 -39.44 -0.38 -1.77 16 22 C -0.07 -0.87 5.74 -104.61 -0.60 -1.47 16 23 C -0.08 -1.00 4.98 -28.06 -0.14 -1.14 16 24 H 0.04 0.76 6.91 -51.93 -0.36 0.41 16 25 H 0.07 1.58 6.64 -51.93 -0.34 1.24 16 26 H 0.01 0.15 7.98 -51.93 -0.41 -0.26 16 27 H 0.03 0.80 7.86 -51.93 -0.41 0.39 16 28 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.07 1.21 7.80 -51.93 -0.41 0.80 16 31 H 0.02 0.38 7.93 -51.93 -0.41 -0.03 16 32 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.09 1.50 7.55 -51.93 -0.39 1.11 16 34 H 0.07 0.80 8.12 -51.93 -0.42 0.37 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.12 1.11 8.05 -52.49 -0.42 0.69 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.12 1.13 8.05 -52.49 -0.42 0.71 16 40 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 41 H 0.07 0.84 8.12 -51.93 -0.42 0.41 16 LS Contribution 325.05 15.07 4.90 4.90 Total: -1.00 -29.74 325.05 -10.46 -40.20 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.82 Total: -2.18 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -3.27 Total: -21.05 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.25 Total: -38.50 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.74 -10.46 -40.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359598847.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.847 kcal (2) G-P(sol) polarization free energy of solvation -29.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds