Wall clock time and date at job start Mon Mar 30 2020 06:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 111.00008 * 2 1 4 4 C 1.50696 * 109.47472 * 66.04129 * 3 2 1 5 5 H 1.08001 * 120.00053 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00107 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99748 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99901 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47007 * 90.00082 * 8 6 4 10 10 H 1.48502 * 109.47018 * 209.99762 * 8 6 4 11 11 H 1.48502 * 109.47578 * 329.99928 * 8 6 4 12 12 C 1.46897 * 111.00645 * 236.03863 * 2 1 3 13 13 C 1.53003 * 109.47304 * 287.81005 * 12 2 1 14 14 H 1.08998 * 109.70827 * 55.61688 * 13 12 2 15 15 C 1.53329 * 109.67417 * 295.08848 * 13 12 2 16 16 C 1.52740 * 108.38349 * 170.43125 * 15 13 12 17 17 C 1.50626 * 110.65246 * 50.91665 * 16 15 13 18 18 C 1.38914 * 117.75602 * 162.13652 * 17 16 15 19 19 C 1.37937 * 120.54090 * 179.64427 * 18 17 16 20 20 C 1.38263 * 119.77403 * 0.29108 * 19 18 17 21 21 C 1.37940 * 119.76797 * 0.13948 * 20 19 18 22 22 C 1.37665 * 122.55880 * 342.59975 * 17 16 15 23 23 C 1.50635 * 122.56727 * 0.31040 * 22 17 16 24 24 H 1.09001 * 109.46998 * 190.58763 * 1 2 3 25 25 H 1.08993 * 109.47551 * 310.59277 * 1 2 3 26 26 H 1.09007 * 109.46653 * 70.59402 * 1 2 3 27 27 H 1.09006 * 109.46793 * 186.04394 * 3 2 1 28 28 H 1.09002 * 109.46673 * 306.04023 * 3 2 1 29 29 H 0.97007 * 119.99797 * 179.97438 * 7 6 4 30 30 H 1.08995 * 109.47533 * 167.80712 * 12 2 1 31 31 H 1.09004 * 109.46597 * 47.80489 * 12 2 1 32 32 H 1.08995 * 109.67946 * 290.15622 * 15 13 12 33 33 H 1.08997 * 109.68012 * 50.70813 * 15 13 12 34 34 H 1.08998 * 109.24654 * 171.42200 * 16 15 13 35 35 H 1.09002 * 109.25248 * 290.88722 * 16 15 13 36 36 H 1.07999 * 119.72717 * 359.92085 * 18 17 16 37 37 H 1.08002 * 120.11000 * 180.31850 * 19 18 17 38 38 H 1.07991 * 120.11327 * 180.11779 * 20 19 18 39 39 H 1.07997 * 119.72287 * 179.91171 * 21 20 19 40 40 H 1.09000 * 109.24744 * 102.71039 * 23 22 17 41 41 H 1.08992 * 109.25221 * 222.17735 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0473 1.2983 5 1 1.0738 1.5117 2.0484 6 6 2.0267 3.3496 1.5283 7 7 2.7119 4.0019 0.6148 8 14 1.5816 4.1875 3.1374 9 1 2.6582 3.9515 4.1327 10 1 1.4291 5.6470 2.9098 11 1 0.3037 3.6301 3.6489 12 6 1.9956 -0.7661 -1.1374 13 6 1.7665 -2.2595 -0.8963 14 1 0.7078 -2.4444 -0.7146 15 6 2.5862 -2.7185 0.3155 16 6 2.1580 -4.1395 0.6765 17 6 2.1918 -5.0293 -0.5384 18 6 2.2045 -6.4033 -0.3338 19 6 2.2279 -7.2713 -1.4055 20 6 2.2450 -6.7708 -2.6942 21 6 2.2413 -5.4067 -2.8992 22 6 2.2195 -4.5308 -1.8213 23 6 2.2252 -3.0539 -2.1174 24 1 -0.3633 -1.0102 0.1888 25 1 -0.3634 0.6686 0.7803 26 1 -0.3633 0.3415 -0.9694 27 1 3.0798 1.3444 -0.1082 28 1 1.5611 1.9273 -0.8310 29 1 2.9859 4.9183 0.7764 30 1 3.0635 -0.5744 -1.2414 31 1 1.4814 -0.4622 -2.0493 32 1 3.6473 -2.7068 0.0665 33 1 2.3991 -2.0533 1.1584 34 1 2.8328 -4.5364 1.4349 35 1 1.1431 -4.1191 1.0736 36 1 2.1914 -6.7950 0.6726 37 1 2.2325 -8.3383 -1.2385 38 1 2.2614 -7.4455 -3.5373 39 1 2.2561 -5.0165 -3.9062 40 1 3.2351 -2.7456 -2.3881 41 1 1.5522 -2.8518 -2.9506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359598847.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:34 Heat of formation + Delta-G solvation = -9.491264 kcal Electronic energy + Delta-G solvation = -19024.145210 eV Core-core repulsion = 16287.942061 eV Total energy + Delta-G solvation = -2736.203149 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.97167 -38.76500 -36.55557 -34.60050 -33.47989 -31.60836 -29.94067 -29.13743 -27.68140 -25.66909 -24.20818 -23.00493 -22.96507 -21.49760 -20.09454 -18.48442 -17.24208 -16.88083 -16.42819 -16.23226 -15.90744 -15.52048 -15.27371 -14.97810 -14.75998 -14.23875 -14.03633 -13.77867 -13.67184 -13.41976 -13.13465 -12.85117 -12.72343 -12.56523 -12.49082 -12.27966 -12.21271 -12.09486 -11.94876 -11.47982 -11.35693 -11.19601 -10.95389 -10.60696 -9.59258 -9.37866 -8.96589 -8.19515 -6.29476 0.52773 0.53354 1.41793 1.43384 1.54362 2.41097 2.90633 3.12920 3.31238 3.77284 3.85340 3.92041 4.14084 4.24361 4.31553 4.36093 4.49264 4.50525 4.54824 4.59740 4.69257 4.73474 4.80596 4.83520 4.90979 4.97977 5.08127 5.12262 5.18215 5.21347 5.23804 5.27104 5.33902 5.48010 5.57551 5.66875 5.67790 5.70148 5.86133 6.06960 6.20829 6.35917 6.67039 6.87368 7.40255 8.91682 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.044666 B = 0.003784 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.729450 B = 7397.532913 C = 7699.355291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.541 5.541 3 C 0.207 3.793 4 C -0.521 4.521 5 H 0.064 0.936 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.970 3.030 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.263 1.263 12 C 0.061 3.939 13 C -0.067 4.067 14 H 0.069 0.931 15 C -0.104 4.104 16 C -0.076 4.076 17 C -0.089 4.089 18 C -0.131 4.131 19 C -0.130 4.130 20 C -0.131 4.131 21 C -0.132 4.132 22 C -0.088 4.088 23 C -0.072 4.072 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.010 0.990 27 H 0.002 0.998 28 H -0.041 1.041 29 H 0.264 0.736 30 H 0.056 0.944 31 H 0.024 0.976 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.134 0.866 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.075 0.925 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 -21.381 -4.699 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.265 5.265 3 C 0.081 3.919 4 C -0.560 4.560 5 H 0.083 0.917 6 C -0.198 4.198 7 N -0.577 5.577 8 Si 0.794 3.206 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.187 1.187 12 C -0.067 4.067 13 C -0.086 4.086 14 H 0.088 0.912 15 C -0.141 4.141 16 C -0.112 4.112 17 C -0.089 4.089 18 C -0.149 4.149 19 C -0.148 4.148 20 C -0.148 4.148 21 C -0.150 4.150 22 C -0.088 4.088 23 C -0.109 4.109 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.029 0.971 27 H 0.020 0.980 28 H -0.023 1.023 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.152 0.848 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.150 0.850 40 H 0.093 0.907 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.700 -21.441 -4.304 21.935 hybrid contribution -0.200 1.406 -0.247 1.441 sum -1.900 -20.035 -4.551 20.634 Atomic orbital electron populations 1.22242 0.87842 1.01466 0.99292 1.61969 1.07904 1.14780 1.41818 1.19389 0.93524 0.84112 0.94900 1.21480 1.34694 0.97442 1.02337 0.91744 1.25932 0.95074 0.98107 1.00700 1.70094 1.39506 1.11887 1.36204 0.85373 0.79000 0.77195 0.78988 1.19867 1.20871 1.18742 1.22146 0.99168 0.94153 0.91243 1.20985 1.00077 0.92117 0.95415 0.91221 1.21417 0.98770 0.95602 0.98342 1.20466 1.02232 0.93590 0.94949 1.19880 1.00013 0.94631 0.94350 1.21415 1.00870 0.92463 1.00186 1.21375 1.00160 1.00619 0.92613 1.21359 1.00288 0.95265 0.97932 1.21392 1.00929 0.93817 0.98829 1.19757 1.00435 0.95510 0.93068 1.20456 1.02102 0.90501 0.97869 0.90550 0.92519 0.97146 0.98009 1.02339 0.92735 0.92578 0.95781 0.92919 0.91576 0.89992 0.90586 0.84833 0.83990 0.84047 0.85042 0.90683 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 9.22 127.69 1.18 2.73 16 2 N -0.54 -23.51 4.04 -927.04 -3.75 -27.26 16 3 C 0.21 11.25 4.71 85.55 0.40 11.65 16 4 C -0.52 -29.83 8.36 25.60 0.21 -29.62 16 5 H 0.06 3.60 7.18 -2.91 -0.02 3.58 16 6 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 7 N -0.94 -57.05 13.29 21.45 0.28 -56.77 16 8 Si 0.97 44.58 29.54 68.60 2.03 46.61 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 12 C 0.06 2.21 4.37 86.30 0.38 2.59 16 13 C -0.07 -1.94 2.21 -10.77 -0.02 -1.97 16 14 H 0.07 2.03 6.73 -2.39 -0.02 2.01 16 15 C -0.10 -3.00 5.26 30.62 0.16 -2.84 16 16 C -0.08 -1.80 5.67 29.74 0.17 -1.63 16 17 C -0.09 -2.10 5.74 -19.86 -0.11 -2.21 16 18 C -0.13 -2.64 9.61 22.36 0.21 -2.42 16 19 C -0.13 -2.28 10.05 22.20 0.22 -2.06 16 20 C -0.13 -2.32 10.05 22.21 0.22 -2.10 16 21 C -0.13 -2.70 9.61 22.36 0.21 -2.48 16 22 C -0.09 -2.09 5.74 -19.86 -0.11 -2.21 16 23 C -0.07 -1.77 4.98 29.74 0.15 -1.62 16 24 H 0.08 2.49 6.91 -2.39 -0.02 2.47 16 25 H 0.06 2.40 6.64 -2.39 -0.02 2.39 16 26 H 0.01 0.39 7.98 -2.38 -0.02 0.37 16 27 H 0.00 0.11 7.86 -2.38 -0.02 0.09 16 28 H -0.04 -2.43 8.12 -2.39 -0.02 -2.45 16 29 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 30 H 0.06 2.12 7.80 -2.39 -0.02 2.10 16 31 H 0.02 0.86 7.93 -2.39 -0.02 0.84 16 32 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 33 H 0.07 2.23 7.55 -2.39 -0.02 2.21 16 34 H 0.08 1.74 8.12 -2.39 -0.02 1.72 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.13 2.16 8.05 -2.91 -0.02 2.14 16 37 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 38 H 0.14 1.76 8.06 -2.92 -0.02 1.74 16 39 H 0.13 2.23 8.05 -2.91 -0.02 2.21 16 40 H 0.07 1.84 8.12 -2.39 -0.02 1.82 16 41 H 0.08 1.79 8.12 -2.39 -0.02 1.77 16 Total: -1.00 -64.48 325.05 3.28 -61.20 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.98 Total: 9.96 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 3.74 Total: -33.75 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -3.46 Total: -84.03 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -64.48 3.28 -61.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359598847.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.708 kcal (2) G-P(sol) polarization free energy of solvation -64.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds