Wall clock time and date at job start Mon Mar 30 2020 06:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 H 1.07998 * 120.00168 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99248 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00492 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99607 * 180.02562 * 6 4 3 9 9 H 1.48508 * 109.46966 * 59.99815 * 8 6 4 10 10 H 1.48494 * 109.47295 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47379 * 300.00094 * 8 6 4 12 12 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 13 13 C 1.52996 * 109.47022 * 293.95609 * 12 2 1 14 14 H 1.09002 * 109.68349 * 55.00223 * 13 12 2 15 15 C 1.53326 * 109.67974 * 175.51804 * 13 12 2 16 16 C 1.52715 * 108.39894 * 189.54951 * 15 13 12 17 17 C 1.50628 * 110.61106 * 308.94574 * 16 15 13 18 18 C 1.38918 * 117.75021 * 197.39734 * 17 16 15 19 19 C 1.37929 * 120.54278 * 180.60985 * 18 17 16 20 20 C 1.38261 * 119.77420 * 359.96801 * 19 18 17 21 21 C 1.37933 * 119.77088 * 359.87801 * 20 19 18 22 22 C 1.37663 * 122.56864 * 17.77491 * 17 16 15 23 23 C 1.50642 * 122.55745 * 359.24915 * 22 17 16 24 24 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 25 25 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 26 26 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 27 27 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 28 28 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 29 29 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.46995 * 53.95554 * 12 2 1 31 31 H 1.09001 * 109.46848 * 173.95560 * 12 2 1 32 32 H 1.09001 * 109.68048 * 309.31215 * 15 13 12 33 33 H 1.08996 * 109.68486 * 69.86657 * 15 13 12 34 34 H 1.09003 * 109.25939 * 188.64295 * 16 15 13 35 35 H 1.08998 * 109.18919 * 69.21086 * 16 15 13 36 36 H 1.07999 * 119.72647 * 0.61683 * 18 17 16 37 37 H 1.08002 * 120.11453 * 179.97438 * 19 18 17 38 38 H 1.08004 * 120.11372 * 179.86401 * 20 19 18 39 39 H 1.08004 * 119.72764 * 180.02562 * 21 20 19 40 40 H 1.09001 * 109.24510 * 257.50269 * 23 22 17 41 41 H 1.09000 * 109.22057 * 138.05867 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0270 3.3494 1.5285 7 7 2.7113 4.0021 0.6147 8 14 1.5832 4.1867 3.1383 9 1 2.1760 3.4294 4.2700 10 1 2.1153 5.5730 3.1384 11 1 0.1061 4.2229 3.2868 12 6 1.9954 -0.7660 -1.1377 13 6 1.6314 -2.2426 -0.9704 14 1 0.5535 -2.3428 -0.8431 15 6 2.0803 -3.0285 -2.2080 16 6 1.4975 -4.4374 -2.1220 17 6 1.8031 -5.0568 -0.7833 18 6 1.6793 -6.4354 -0.6651 19 6 1.9327 -7.0613 0.5376 20 6 2.3137 -6.3115 1.6349 21 6 2.4403 -4.9429 1.5187 22 6 2.1867 -4.3107 0.3081 23 6 2.3489 -2.8142 0.2507 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3633 0.4513 -0.9233 26 1 -0.3633 0.5740 0.8525 27 1 3.0798 1.3443 -0.1082 28 1 1.5612 1.9273 -0.8309 29 1 2.9859 4.9182 0.7767 30 1 1.5611 -0.3872 -2.0628 31 1 3.0797 -0.6611 -1.1757 32 1 1.7160 -2.5344 -3.1087 33 1 3.1686 -3.0831 -2.2333 34 1 1.9295 -5.0539 -2.9103 35 1 0.4170 -4.3870 -2.2565 36 1 1.3823 -7.0218 -1.5220 37 1 1.8339 -8.1335 0.6218 38 1 2.5114 -6.7957 2.5799 39 1 2.7383 -4.3579 2.3763 40 1 3.4095 -2.5698 0.1914 41 1 1.9283 -2.3727 1.1541 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359598848.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:37 Heat of formation + Delta-G solvation = 5.853361 kcal Electronic energy + Delta-G solvation = -19098.274698 eV Core-core repulsion = 16362.736942 eV Total energy + Delta-G solvation = -2735.537756 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.99698 -37.35934 -35.24766 -32.70490 -32.23176 -30.53301 -28.89540 -27.13048 -26.24232 -24.17087 -23.11321 -22.04882 -21.43107 -19.96676 -19.01045 -16.42727 -16.28203 -15.56856 -15.08104 -14.88840 -14.34100 -14.30346 -14.04426 -13.62066 -13.16322 -13.11695 -12.90319 -12.68610 -12.16465 -11.89092 -11.62293 -11.55380 -11.33027 -11.13477 -11.04760 -10.82850 -10.73614 -10.56060 -10.27848 -10.16012 -10.09222 -9.68740 -9.14797 -8.69332 -8.43626 -8.41285 -7.18142 -6.00535 -4.01719 1.41923 1.45310 3.34684 3.38631 3.41629 3.81150 4.43736 4.69009 4.78405 4.90371 5.01825 5.05873 5.15233 5.25090 5.34602 5.43628 5.48234 5.54783 5.64372 5.73633 5.90439 5.95161 6.00282 6.08147 6.14295 6.17202 6.18681 6.25192 6.32480 6.42007 6.53342 6.55784 6.61521 6.70467 6.81136 6.85658 7.10632 7.33116 7.38585 7.82754 8.12475 8.24466 8.59194 9.05946 9.62372 11.10382 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.030456 B = 0.004219 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.141591 B = 6635.805663 C = 7224.313296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.538 5.538 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.060 3.940 13 C -0.081 4.081 14 H 0.071 0.929 15 C -0.116 4.116 16 C -0.077 4.077 17 C -0.080 4.080 18 C -0.124 4.124 19 C -0.132 4.132 20 C -0.125 4.125 21 C -0.121 4.121 22 C -0.064 4.064 23 C -0.068 4.068 24 H 0.046 0.954 25 H 0.009 0.991 26 H 0.072 0.928 27 H 0.029 0.971 28 H -0.011 1.011 29 H 0.261 0.739 30 H 0.022 0.978 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.075 0.925 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.749 -19.215 -3.737 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.263 5.263 3 C 0.067 3.933 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.069 4.069 13 C -0.100 4.100 14 H 0.090 0.910 15 C -0.154 4.154 16 C -0.114 4.114 17 C -0.080 4.080 18 C -0.142 4.142 19 C -0.150 4.150 20 C -0.143 4.143 21 C -0.139 4.139 22 C -0.064 4.064 23 C -0.105 4.105 24 H 0.064 0.936 25 H 0.027 0.973 26 H 0.091 0.909 27 H 0.047 0.953 28 H 0.007 0.993 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.093 0.907 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.499 -19.249 -3.338 19.593 hybrid contribution -0.440 0.883 0.133 0.995 sum -1.940 -18.366 -3.205 18.744 Atomic orbital electron populations 1.22245 0.89230 0.99427 1.00363 1.62089 1.06709 1.17605 1.39858 1.19718 0.95307 0.81744 0.96486 1.21140 1.34732 0.96887 1.01745 0.91931 1.24987 0.95347 0.97360 0.96930 1.69949 1.38460 1.11468 1.34085 0.86574 0.78677 0.78343 0.83884 1.20168 1.21389 1.20311 1.22102 0.99975 0.92237 0.92558 1.21166 1.00268 0.94537 0.93990 0.91034 1.21599 1.00935 0.94468 0.98371 1.20444 1.01058 0.96368 0.93575 1.19665 0.99818 0.93176 0.95373 1.21113 1.01232 0.94151 0.97699 1.20980 1.01186 0.99442 0.93362 1.21040 1.00625 0.94186 0.98495 1.21249 1.00442 0.94643 0.97531 1.19924 0.97459 0.96503 0.92535 1.20449 1.01169 0.88849 1.00051 0.93558 0.97292 0.90901 0.95325 0.99299 0.92913 0.95985 0.91471 0.91597 0.91676 0.91181 0.90908 0.86636 0.86590 0.86455 0.86035 0.90708 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.15 60.07 0.55 1.26 16 2 N -0.54 -11.49 4.40 -244.37 -1.08 -12.56 16 3 C 0.19 5.04 4.72 -4.97 -0.02 5.02 16 4 C -0.51 -14.26 8.46 -34.44 -0.29 -14.56 16 5 H 0.06 1.74 7.12 -52.49 -0.37 1.36 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.06 1.06 4.35 -3.82 -0.02 1.05 16 13 C -0.08 -1.17 2.12 -90.59 -0.19 -1.37 16 14 H 0.07 1.07 6.31 -51.93 -0.33 0.75 16 15 C -0.12 -1.40 5.28 -26.71 -0.14 -1.54 16 16 C -0.08 -0.85 5.67 -28.06 -0.16 -1.01 16 17 C -0.08 -1.00 5.74 -104.62 -0.60 -1.60 16 18 C -0.12 -1.39 9.61 -39.44 -0.38 -1.77 16 19 C -0.13 -1.42 10.05 -39.69 -0.40 -1.82 16 20 C -0.13 -1.42 10.05 -39.68 -0.40 -1.82 16 21 C -0.12 -1.54 9.61 -39.45 -0.38 -1.92 16 22 C -0.06 -0.87 5.74 -104.61 -0.60 -1.47 16 23 C -0.07 -1.01 4.78 -28.05 -0.13 -1.14 16 24 H 0.05 0.78 6.38 -51.93 -0.33 0.45 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.07 1.53 6.76 -51.93 -0.35 1.18 16 27 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 28 H -0.01 -0.30 8.12 -51.93 -0.42 -0.73 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.07 1.21 7.90 -51.93 -0.41 0.80 16 32 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 33 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.12 1.05 8.05 -52.49 -0.42 0.62 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.12 1.44 8.05 -52.48 -0.42 1.02 16 40 H 0.07 1.12 8.09 -51.93 -0.42 0.70 16 41 H 0.09 1.45 8.00 -51.93 -0.42 1.04 16 LS Contribution 325.22 15.07 4.90 4.90 Total: -1.00 -29.87 325.22 -10.54 -40.41 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -6.82 Total: -2.07 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -3.26 Total: -21.22 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: -0.34 Total: -38.73 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.87 -10.54 -40.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359598848.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.267 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds