Wall clock time and date at job start Mon Mar 30 2020 06:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 H 1.07998 * 120.00168 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99248 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00492 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99607 * 180.02562 * 6 4 3 9 9 H 1.48508 * 109.46966 * 59.99815 * 8 6 4 10 10 H 1.48494 * 109.47295 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47379 * 300.00094 * 8 6 4 12 12 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 13 13 C 1.52996 * 109.47022 * 293.95609 * 12 2 1 14 14 H 1.09002 * 109.68349 * 55.00223 * 13 12 2 15 15 C 1.53326 * 109.67974 * 175.51804 * 13 12 2 16 16 C 1.52715 * 108.39894 * 189.54951 * 15 13 12 17 17 C 1.50628 * 110.61106 * 308.94574 * 16 15 13 18 18 C 1.38918 * 117.75021 * 197.39734 * 17 16 15 19 19 C 1.37929 * 120.54278 * 180.60985 * 18 17 16 20 20 C 1.38261 * 119.77420 * 359.96801 * 19 18 17 21 21 C 1.37933 * 119.77088 * 359.87801 * 20 19 18 22 22 C 1.37663 * 122.56864 * 17.77491 * 17 16 15 23 23 C 1.50642 * 122.55745 * 359.24915 * 22 17 16 24 24 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 25 25 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 26 26 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 27 27 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 28 28 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 29 29 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.46995 * 53.95554 * 12 2 1 31 31 H 1.09001 * 109.46848 * 173.95560 * 12 2 1 32 32 H 1.09001 * 109.68048 * 309.31215 * 15 13 12 33 33 H 1.08996 * 109.68486 * 69.86657 * 15 13 12 34 34 H 1.09003 * 109.25939 * 188.64295 * 16 15 13 35 35 H 1.08998 * 109.18919 * 69.21086 * 16 15 13 36 36 H 1.07999 * 119.72647 * 0.61683 * 18 17 16 37 37 H 1.08002 * 120.11453 * 179.97438 * 19 18 17 38 38 H 1.08004 * 120.11372 * 179.86401 * 20 19 18 39 39 H 1.08004 * 119.72764 * 180.02562 * 21 20 19 40 40 H 1.09001 * 109.24510 * 257.50269 * 23 22 17 41 41 H 1.09000 * 109.22057 * 138.05867 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0270 3.3494 1.5285 7 7 2.7113 4.0021 0.6147 8 14 1.5832 4.1867 3.1383 9 1 2.1760 3.4294 4.2700 10 1 2.1153 5.5730 3.1384 11 1 0.1061 4.2229 3.2868 12 6 1.9954 -0.7660 -1.1377 13 6 1.6314 -2.2426 -0.9704 14 1 0.5535 -2.3428 -0.8431 15 6 2.0803 -3.0285 -2.2080 16 6 1.4975 -4.4374 -2.1220 17 6 1.8031 -5.0568 -0.7833 18 6 1.6793 -6.4354 -0.6651 19 6 1.9327 -7.0613 0.5376 20 6 2.3137 -6.3115 1.6349 21 6 2.4403 -4.9429 1.5187 22 6 2.1867 -4.3107 0.3081 23 6 2.3489 -2.8142 0.2507 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3633 0.4513 -0.9233 26 1 -0.3633 0.5740 0.8525 27 1 3.0798 1.3443 -0.1082 28 1 1.5612 1.9273 -0.8309 29 1 2.9859 4.9182 0.7767 30 1 1.5611 -0.3872 -2.0628 31 1 3.0797 -0.6611 -1.1757 32 1 1.7160 -2.5344 -3.1087 33 1 3.1686 -3.0831 -2.2333 34 1 1.9295 -5.0539 -2.9103 35 1 0.4170 -4.3870 -2.2565 36 1 1.3823 -7.0218 -1.5220 37 1 1.8339 -8.1335 0.6218 38 1 2.5114 -6.7957 2.5799 39 1 2.7383 -4.3579 2.3763 40 1 3.4095 -2.5698 0.1914 41 1 1.9283 -2.3727 1.1541 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359598848.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:37 Heat of formation + Delta-G solvation = -9.777997 kcal Electronic energy + Delta-G solvation = -19098.952524 eV Core-core repulsion = 16362.736942 eV Total energy + Delta-G solvation = -2736.215582 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97621 -38.77462 -36.59250 -34.63094 -33.36490 -31.68035 -29.94818 -29.04997 -27.71924 -25.78358 -24.25376 -22.99810 -22.84254 -21.49867 -20.10302 -18.50156 -17.27730 -16.80209 -16.57902 -16.18442 -15.92171 -15.63229 -15.26745 -14.94848 -14.43111 -14.28378 -14.18642 -13.87544 -13.69677 -13.35098 -12.97818 -12.89406 -12.71777 -12.60090 -12.55374 -12.33017 -12.21634 -12.14693 -11.85516 -11.50487 -11.44535 -11.13761 -10.97424 -10.61027 -9.58488 -9.36421 -8.97400 -8.20141 -6.30375 0.53636 0.54367 1.40782 1.44136 1.52020 2.40426 2.91620 3.12141 3.33313 3.71082 3.83172 3.98913 4.15357 4.20841 4.28370 4.33920 4.46758 4.52874 4.55630 4.62086 4.71860 4.73639 4.82691 4.86336 4.88505 5.02865 5.08172 5.11921 5.16651 5.20261 5.21487 5.26560 5.31500 5.45196 5.51057 5.65557 5.67992 5.70348 5.88556 6.06042 6.22055 6.35245 6.66379 6.86073 7.39414 8.90861 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.030456 B = 0.004219 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.141591 B = 6635.805663 C = 7224.313296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.544 5.544 3 C 0.207 3.793 4 C -0.524 4.524 5 H 0.063 0.937 6 C 0.001 3.999 7 N -0.936 5.936 8 Si 0.969 3.031 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.267 1.267 12 C 0.061 3.939 13 C -0.070 4.070 14 H 0.072 0.928 15 C -0.111 4.111 16 C -0.073 4.073 17 C -0.091 4.091 18 C -0.127 4.127 19 C -0.131 4.131 20 C -0.131 4.131 21 C -0.139 4.139 22 C -0.086 4.086 23 C -0.061 4.061 24 H 0.077 0.923 25 H 0.009 0.991 26 H 0.055 0.945 27 H 0.002 0.998 28 H -0.040 1.040 29 H 0.264 0.736 30 H 0.024 0.976 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.118 0.882 40 H 0.062 0.938 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.710 -21.420 -3.626 21.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.268 5.268 3 C 0.081 3.919 4 C -0.562 4.562 5 H 0.081 0.919 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.192 1.192 12 C -0.067 4.067 13 C -0.089 4.089 14 H 0.090 0.910 15 C -0.149 4.149 16 C -0.110 4.110 17 C -0.091 4.091 18 C -0.145 4.145 19 C -0.149 4.149 20 C -0.149 4.149 21 C -0.157 4.157 22 C -0.086 4.086 23 C -0.098 4.098 24 H 0.096 0.904 25 H 0.027 0.973 26 H 0.074 0.926 27 H 0.020 0.980 28 H -0.022 1.022 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.155 0.845 39 H 0.136 0.864 40 H 0.080 0.920 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.469 -21.478 -3.232 21.859 hybrid contribution -0.121 1.494 0.072 1.500 sum -2.590 -19.984 -3.160 20.397 Atomic orbital electron populations 1.22222 0.87900 1.01064 0.99555 1.62008 1.07928 1.14883 1.41940 1.19375 0.93534 0.84089 0.94903 1.21455 1.34856 0.97509 1.02392 0.91875 1.25919 0.95003 0.98047 1.00696 1.70081 1.39414 1.11899 1.36249 0.85442 0.78854 0.77170 0.79184 1.19350 1.20811 1.19182 1.22181 0.99267 0.93984 0.91281 1.21060 1.00130 0.92231 0.95451 0.91015 1.21563 1.00943 0.95201 0.97200 1.20460 1.01658 0.95388 0.93488 1.19902 0.99675 0.94008 0.95525 1.21438 1.00511 0.93709 0.98829 1.21375 0.99744 1.00898 0.92859 1.21326 1.00117 0.93561 0.99848 1.21378 1.01234 0.95697 0.97372 1.19863 0.99522 0.95531 0.93713 1.20282 1.00186 0.90310 0.99032 0.90445 0.97276 0.92629 0.98033 1.02244 0.92690 0.95793 0.92466 0.90489 0.91905 0.88940 0.89978 0.84084 0.83815 0.84461 0.86378 0.91984 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.15 127.69 1.17 2.78 16 2 N -0.54 -23.89 4.40 -927.03 -4.08 -27.96 16 3 C 0.21 11.35 4.72 85.56 0.40 11.75 16 4 C -0.52 -30.25 8.46 25.60 0.22 -30.04 16 5 H 0.06 3.56 7.12 -2.91 -0.02 3.54 16 6 C 0.00 0.07 5.46 84.66 0.46 0.53 16 7 N -0.94 -57.24 13.29 21.45 0.28 -56.95 16 8 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 C 0.06 2.21 4.35 86.30 0.38 2.59 16 13 C -0.07 -2.01 2.12 -10.78 -0.02 -2.03 16 14 H 0.07 2.06 6.31 -2.39 -0.02 2.05 16 15 C -0.11 -2.51 5.28 30.61 0.16 -2.35 16 16 C -0.07 -1.40 5.67 29.73 0.17 -1.23 16 17 C -0.09 -2.08 5.74 -19.86 -0.11 -2.20 16 18 C -0.13 -2.44 9.61 22.36 0.21 -2.22 16 19 C -0.13 -2.41 10.05 22.20 0.22 -2.18 16 20 C -0.13 -2.70 10.05 22.20 0.22 -2.48 16 21 C -0.14 -3.49 9.61 22.36 0.21 -3.27 16 22 C -0.09 -2.30 5.74 -19.86 -0.11 -2.42 16 23 C -0.06 -1.83 4.78 29.74 0.14 -1.69 16 24 H 0.08 2.55 6.38 -2.39 -0.02 2.53 16 25 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.05 2.36 6.76 -2.38 -0.02 2.35 16 27 H 0.00 0.09 7.93 -2.39 -0.02 0.07 16 28 H -0.04 -2.38 8.12 -2.39 -0.02 -2.40 16 29 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.02 0.86 8.12 -2.39 -0.02 0.84 16 31 H 0.06 2.16 7.90 -2.39 -0.02 2.14 16 32 H 0.08 1.58 8.13 -2.39 -0.02 1.56 16 33 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 34 H 0.09 1.39 8.13 -2.39 -0.02 1.37 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.14 1.94 8.05 -2.91 -0.02 1.92 16 37 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 38 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.12 2.89 8.05 -2.91 -0.02 2.87 16 40 H 0.06 1.96 8.09 -2.39 -0.02 1.94 16 41 H 0.06 2.22 8.00 -2.39 -0.02 2.20 16 Total: -1.00 -65.39 325.22 2.93 -62.46 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.98 Total: 10.08 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 3.72 Total: -34.46 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -3.79 Total: -84.92 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.39 2.93 -62.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359598848.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.681 kcal (2) G-P(sol) polarization free energy of solvation -65.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds