Wall clock time and date at job start Mon Mar 30 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 112.90913 * 2 1 4 4 C 1.53775 * 113.61632 * 228.74376 * 2 1 3 5 5 H 1.09005 * 113.61558 * 25.51653 * 4 2 1 6 6 N 1.46900 * 113.61579 * 156.33828 * 4 2 1 7 7 C 1.46906 * 110.99648 * 205.00053 * 6 4 2 8 8 C 1.53003 * 109.46612 * 180.02562 * 7 6 4 9 9 C 1.50697 * 109.46873 * 180.02562 * 8 7 6 10 10 H 1.08006 * 120.00392 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00000 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00005 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99989 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.47267 * 90.00575 * 13 11 9 15 15 H 1.48500 * 109.47150 * 210.00723 * 13 11 9 16 16 H 1.48506 * 109.47112 * 330.00378 * 13 11 9 17 17 C 1.53958 * 87.11376 * 270.81607 * 4 2 1 18 18 C 1.53777 * 87.01759 * 334.63714 * 17 4 2 19 19 H 1.09003 * 113.61292 * 270.76844 * 18 17 4 20 20 C 1.50703 * 113.61596 * 139.95359 * 18 17 4 21 21 C 1.38238 * 119.99936 * 150.53439 * 20 18 17 22 22 C 1.38239 * 119.99749 * 179.78292 * 21 20 18 23 23 C 1.38238 * 119.99890 * 0.44488 * 22 21 20 24 24 C 1.38234 * 119.99995 * 359.81179 * 23 22 21 25 25 C 1.38231 * 120.00134 * 330.80500 * 20 18 17 26 26 H 1.09000 * 109.47317 * 285.97719 * 1 2 3 27 27 H 1.09004 * 109.46691 * 45.97049 * 1 2 3 28 28 H 1.08995 * 109.47419 * 165.97592 * 1 2 3 29 29 H 1.00888 * 110.99779 * 328.95349 * 6 4 2 30 30 H 1.09001 * 109.47238 * 299.99411 * 7 6 4 31 31 H 1.08999 * 109.47292 * 60.00197 * 7 6 4 32 32 H 1.09001 * 109.46632 * 299.99531 * 8 7 6 33 33 H 1.08999 * 109.47337 * 59.99973 * 8 7 6 34 34 H 0.97008 * 119.99810 * 180.02562 * 12 11 9 35 35 H 1.08995 * 113.66768 * 220.10784 * 17 4 2 36 36 H 1.09002 * 113.61471 * 89.15500 * 17 4 2 37 37 H 1.07998 * 120.00231 * 359.97438 * 21 20 18 38 38 H 1.08001 * 120.00059 * 180.27700 * 22 21 20 39 39 H 1.07998 * 119.99927 * 179.82860 * 23 22 21 40 40 H 1.07999 * 120.00072 * 179.97438 * 24 23 22 41 41 H 1.08012 * 119.99573 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9543 1.0041 0.0000 4 6 2.1460 -0.9291 -1.0592 5 1 1.4951 -1.1076 -1.9152 6 7 3.5114 -0.5529 -1.4495 7 6 3.8258 -1.0393 -2.7996 8 6 5.2528 -0.6296 -3.1696 9 6 5.5752 -1.1280 -4.5548 10 1 4.8364 -1.6819 -5.1150 11 6 6.8137 -0.8777 -5.1065 12 7 7.0949 -1.3122 -6.3156 13 14 8.0918 0.0797 -4.1374 14 1 8.9144 -0.8627 -3.3371 15 1 8.9671 0.8269 -5.0758 16 1 7.4098 1.0361 -3.2287 17 6 2.0949 -2.0439 0.0014 18 6 2.1459 -0.9291 1.0594 19 1 3.1585 -0.6490 1.3502 20 6 1.2451 -1.1772 2.2419 21 6 1.5806 -0.6724 3.4843 22 6 0.7520 -0.8962 4.5679 23 6 -0.4073 -1.6327 4.4111 24 6 -0.7400 -2.1421 3.1698 25 6 0.0864 -1.9145 2.0853 26 1 -0.3634 0.2829 0.9880 27 1 -0.3633 0.7143 -0.7389 28 1 -0.3634 -0.9970 -0.2490 29 1 3.6438 0.4452 -1.3847 30 1 3.7426 -2.1259 -2.8229 31 1 3.1261 -0.6058 -3.5141 32 1 5.3364 0.4569 -3.1462 33 1 5.9522 -1.0634 -2.4550 34 1 7.9664 -1.1365 -6.7036 35 1 2.9746 -2.6875 0.0025 36 1 1.1596 -2.6037 0.0018 37 1 2.4883 -0.1004 3.6077 38 1 1.0117 -0.4980 5.5377 39 1 -1.0532 -1.8100 5.2583 40 1 -1.6454 -2.7178 3.0474 41 1 -0.1736 -2.3123 1.1153 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361896141.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:10 Heat of formation + Delta-G solvation = 34.970807 kcal Electronic energy + Delta-G solvation = -18681.344067 eV Core-core repulsion = 15947.068939 eV Total energy + Delta-G solvation = -2734.275129 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57918 -38.30098 -34.92052 -32.62361 -31.22534 -30.95412 -29.66133 -28.70341 -25.06651 -24.49930 -22.97607 -22.26162 -21.27224 -20.32115 -18.28637 -17.05963 -16.72274 -15.87564 -15.42824 -15.18609 -14.64078 -14.39093 -14.17559 -13.79321 -13.60868 -13.15400 -12.89425 -12.58813 -12.40051 -12.31316 -12.14687 -11.78931 -11.56548 -11.20624 -11.09743 -11.03220 -10.73782 -10.43129 -10.09736 -9.99552 -9.79003 -9.58186 -9.21852 -9.01534 -8.70098 -8.52962 -7.93194 -6.03756 -4.02098 1.24741 1.28531 3.33497 3.40193 3.44822 3.64871 4.34002 4.46842 4.58190 4.67095 4.77016 4.83298 4.86988 4.98648 5.04535 5.26292 5.30890 5.35013 5.43151 5.46548 5.59325 5.70388 5.76003 5.85803 5.92221 5.95976 6.04462 6.15160 6.24430 6.27632 6.32718 6.34349 6.39107 6.45856 6.66705 6.78912 6.89776 7.16419 7.39333 7.62816 7.76638 7.91404 8.53926 9.00399 9.58642 11.09608 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.041944 B = 0.003451 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.394363 B = 8110.888222 C = 8412.771554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 H 0.076 0.924 4 C 0.067 3.933 5 H 0.057 0.943 6 N -0.676 5.676 7 C 0.075 3.925 8 C -0.010 4.010 9 C -0.521 4.521 10 H 0.071 0.929 11 C 0.066 3.934 12 N -0.904 5.904 13 Si 0.883 3.117 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.265 1.265 17 C -0.126 4.126 18 C -0.063 4.063 19 H 0.102 0.898 20 C -0.060 4.060 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.131 4.131 24 C -0.123 4.123 25 C -0.116 4.116 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.337 0.663 30 H 0.064 0.936 31 H 0.022 0.978 32 H 0.013 0.987 33 H 0.021 0.979 34 H 0.263 0.737 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.721 1.581 20.378 25.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 H 0.095 0.905 4 C -0.044 4.044 5 H 0.075 0.925 6 N -0.307 5.307 7 C -0.053 4.053 8 C -0.048 4.048 9 C -0.560 4.560 10 H 0.089 0.911 11 C -0.135 4.135 12 N -0.543 5.543 13 Si 0.711 3.289 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.190 1.190 17 C -0.164 4.164 18 C -0.082 4.082 19 H 0.120 0.880 20 C -0.060 4.060 21 C -0.136 4.136 22 C -0.140 4.140 23 C -0.149 4.149 24 C -0.141 4.141 25 C -0.134 4.134 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.155 0.845 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.031 0.969 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.282 1.040 20.537 25.620 hybrid contribution 0.271 1.050 -0.133 1.093 sum -15.011 2.090 20.403 25.416 Atomic orbital electron populations 1.21695 0.93847 1.01790 1.01760 1.22686 0.95757 0.98219 0.96044 0.90516 1.22674 0.90088 0.96248 0.95348 0.92539 1.60473 1.22104 1.19024 1.29135 1.22002 0.98368 0.99665 0.85264 1.19546 0.91986 0.96248 0.96977 1.21075 1.00237 1.35709 0.98943 0.91128 1.25015 0.98268 0.95393 0.94795 1.69922 1.22495 1.46676 1.15237 0.86724 0.81525 0.80693 0.79993 1.20245 1.21523 1.18995 1.23165 1.02016 0.96259 0.94956 1.21541 0.98118 0.97863 0.90629 0.87995 1.19864 0.95239 0.96383 0.94547 1.21095 0.99810 1.00288 0.92456 1.21120 0.95031 0.99165 0.98644 1.21094 0.97412 0.99056 0.97361 1.21129 0.99681 1.00205 0.93040 1.21190 0.94529 0.98768 0.98871 0.92030 0.92689 0.92310 0.84457 0.91740 0.95934 0.96896 0.96111 0.92734 0.90465 0.90241 0.86211 0.86415 0.86536 0.86379 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 8.03 37.16 0.30 -1.03 16 2 C -0.11 -1.24 4.14 -89.81 -0.37 -1.61 16 3 H 0.08 0.89 7.91 -51.93 -0.41 0.47 16 4 C 0.07 0.92 3.78 -66.81 -0.25 0.67 16 5 H 0.06 0.81 7.82 -51.93 -0.41 0.40 16 6 N -0.68 -11.20 6.45 -105.76 -0.68 -11.88 16 7 C 0.08 1.52 5.47 -3.82 -0.02 1.50 16 8 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 9 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 10 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 11 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 12 N -0.90 -28.17 13.96 55.43 0.77 -27.39 16 13 Si 0.88 22.04 27.47 -169.99 -4.67 17.38 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 17 C -0.13 -1.58 6.90 -25.83 -0.18 -1.76 16 18 C -0.06 -0.74 3.86 -90.96 -0.35 -1.09 16 19 H 0.10 1.27 8.12 -51.93 -0.42 0.85 16 20 C -0.06 -0.66 4.51 -104.62 -0.47 -1.13 16 21 C -0.12 -1.22 9.72 -39.58 -0.38 -1.61 16 22 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 23 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 24 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 25 C -0.12 -1.16 7.13 -39.59 -0.28 -1.45 16 26 H 0.06 0.61 6.80 -51.93 -0.35 0.26 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.56 5.94 -51.93 -0.31 0.25 16 29 H 0.34 5.29 8.38 -39.30 -0.33 4.96 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.02 0.46 8.13 -51.93 -0.42 0.04 16 32 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 33 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.08 0.88 5.59 -51.93 -0.29 0.59 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.12 1.15 4.77 -52.48 -0.25 0.90 16 LS Contribution 322.94 15.07 4.87 4.87 Total: -1.00 -30.72 322.94 -9.97 -40.70 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.51 Total: 2.32 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -3.76 Total: -25.98 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.09 Total: -39.27 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.72 -9.97 -40.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361896141.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.666 kcal (2) G-P(sol) polarization free energy of solvation -30.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds