Wall clock time and date at job start Mon Mar 30 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 112.90913 * 2 1 4 4 C 1.53775 * 113.61632 * 228.74376 * 2 1 3 5 5 H 1.09005 * 113.61558 * 25.51653 * 4 2 1 6 6 N 1.46900 * 113.61579 * 156.33828 * 4 2 1 7 7 C 1.46906 * 110.99648 * 205.00053 * 6 4 2 8 8 C 1.53003 * 109.46612 * 180.02562 * 7 6 4 9 9 C 1.50697 * 109.46873 * 180.02562 * 8 7 6 10 10 H 1.08006 * 120.00392 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00000 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00005 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99989 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.47267 * 90.00575 * 13 11 9 15 15 H 1.48500 * 109.47150 * 210.00723 * 13 11 9 16 16 H 1.48506 * 109.47112 * 330.00378 * 13 11 9 17 17 C 1.53958 * 87.11376 * 270.81607 * 4 2 1 18 18 C 1.53777 * 87.01759 * 334.63714 * 17 4 2 19 19 H 1.09003 * 113.61292 * 270.76844 * 18 17 4 20 20 C 1.50703 * 113.61596 * 139.95359 * 18 17 4 21 21 C 1.38238 * 119.99936 * 150.53439 * 20 18 17 22 22 C 1.38239 * 119.99749 * 179.78292 * 21 20 18 23 23 C 1.38238 * 119.99890 * 0.44488 * 22 21 20 24 24 C 1.38234 * 119.99995 * 359.81179 * 23 22 21 25 25 C 1.38231 * 120.00134 * 330.80500 * 20 18 17 26 26 H 1.09000 * 109.47317 * 285.97719 * 1 2 3 27 27 H 1.09004 * 109.46691 * 45.97049 * 1 2 3 28 28 H 1.08995 * 109.47419 * 165.97592 * 1 2 3 29 29 H 1.00888 * 110.99779 * 328.95349 * 6 4 2 30 30 H 1.09001 * 109.47238 * 299.99411 * 7 6 4 31 31 H 1.08999 * 109.47292 * 60.00197 * 7 6 4 32 32 H 1.09001 * 109.46632 * 299.99531 * 8 7 6 33 33 H 1.08999 * 109.47337 * 59.99973 * 8 7 6 34 34 H 0.97008 * 119.99810 * 180.02562 * 12 11 9 35 35 H 1.08995 * 113.66768 * 220.10784 * 17 4 2 36 36 H 1.09002 * 113.61471 * 89.15500 * 17 4 2 37 37 H 1.07998 * 120.00231 * 359.97438 * 21 20 18 38 38 H 1.08001 * 120.00059 * 180.27700 * 22 21 20 39 39 H 1.07998 * 119.99927 * 179.82860 * 23 22 21 40 40 H 1.07999 * 120.00072 * 179.97438 * 24 23 22 41 41 H 1.08012 * 119.99573 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9543 1.0041 0.0000 4 6 2.1460 -0.9291 -1.0592 5 1 1.4951 -1.1076 -1.9152 6 7 3.5114 -0.5529 -1.4495 7 6 3.8258 -1.0393 -2.7996 8 6 5.2528 -0.6296 -3.1696 9 6 5.5752 -1.1280 -4.5548 10 1 4.8364 -1.6819 -5.1150 11 6 6.8137 -0.8777 -5.1065 12 7 7.0949 -1.3122 -6.3156 13 14 8.0918 0.0797 -4.1374 14 1 8.9144 -0.8627 -3.3371 15 1 8.9671 0.8269 -5.0758 16 1 7.4098 1.0361 -3.2287 17 6 2.0949 -2.0439 0.0014 18 6 2.1459 -0.9291 1.0594 19 1 3.1585 -0.6490 1.3502 20 6 1.2451 -1.1772 2.2419 21 6 1.5806 -0.6724 3.4843 22 6 0.7520 -0.8962 4.5679 23 6 -0.4073 -1.6327 4.4111 24 6 -0.7400 -2.1421 3.1698 25 6 0.0864 -1.9145 2.0853 26 1 -0.3634 0.2829 0.9880 27 1 -0.3633 0.7143 -0.7389 28 1 -0.3634 -0.9970 -0.2490 29 1 3.6438 0.4452 -1.3847 30 1 3.7426 -2.1259 -2.8229 31 1 3.1261 -0.6058 -3.5141 32 1 5.3364 0.4569 -3.1462 33 1 5.9522 -1.0634 -2.4550 34 1 7.9664 -1.1365 -6.7036 35 1 2.9746 -2.6875 0.0025 36 1 1.1596 -2.6037 0.0018 37 1 2.4883 -0.1004 3.6077 38 1 1.0117 -0.4980 5.5377 39 1 -1.0532 -1.8100 5.2583 40 1 -1.6454 -2.7178 3.0474 41 1 -0.1736 -2.3123 1.1153 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361896141.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:10 Heat of formation + Delta-G solvation = 17.517258 kcal Electronic energy + Delta-G solvation = -18682.100910 eV Core-core repulsion = 15947.068939 eV Total energy + Delta-G solvation = -2735.031971 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.48374 -39.15079 -36.51354 -34.61640 -32.22107 -31.80799 -30.94985 -29.88638 -26.41422 -25.72877 -24.16686 -23.06196 -22.27123 -22.01502 -19.32985 -18.90494 -17.81192 -16.90867 -16.36948 -16.32822 -16.21888 -15.60145 -15.30345 -14.99989 -14.71155 -14.57858 -14.21011 -13.93664 -13.42596 -13.26556 -13.13404 -13.06184 -12.88454 -12.67309 -12.42882 -11.99735 -11.85966 -11.82699 -11.71291 -11.46560 -11.41671 -11.13014 -10.84837 -10.77515 -9.72066 -9.45031 -9.30147 -8.30827 -6.35604 0.52428 0.58051 1.37303 1.38324 1.51083 2.36198 2.92518 3.04786 3.15621 3.57920 3.75149 3.92121 3.94296 4.16130 4.22420 4.31929 4.35806 4.45465 4.50404 4.54807 4.62701 4.69465 4.73201 4.76727 4.93264 4.95345 5.01479 5.11937 5.18633 5.22962 5.25870 5.32401 5.40105 5.44549 5.50328 5.62852 5.67652 5.70253 5.87124 6.18391 6.20621 6.26097 6.53780 6.73309 7.29372 8.85933 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.041944 B = 0.003451 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.394363 B = 8110.888222 C = 8412.771554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.096 4.096 3 H 0.078 0.922 4 C 0.058 3.942 5 H 0.052 0.948 6 N -0.674 5.674 7 C 0.090 3.910 8 C -0.003 4.003 9 C -0.535 4.535 10 H 0.031 0.969 11 C 0.004 3.996 12 N -0.951 5.951 13 Si 0.956 3.044 14 H -0.268 1.268 15 H -0.283 1.283 16 H -0.246 1.246 17 C -0.124 4.124 18 C -0.056 4.056 19 H 0.091 0.909 20 C -0.074 4.074 21 C -0.133 4.133 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.128 4.128 25 C -0.124 4.124 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.344 0.656 30 H 0.052 0.948 31 H 0.017 0.983 32 H 0.021 0.979 33 H 0.021 0.979 34 H 0.267 0.733 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.124 0.876 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.483 2.550 22.937 28.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.116 4.116 3 H 0.096 0.904 4 C -0.053 4.053 5 H 0.070 0.930 6 N -0.306 5.306 7 C -0.039 4.039 8 C -0.041 4.041 9 C -0.573 4.573 10 H 0.049 0.951 11 C -0.192 4.192 12 N -0.592 5.592 13 Si 0.779 3.221 14 H -0.193 1.193 15 H -0.209 1.209 16 H -0.169 1.169 17 C -0.162 4.162 18 C -0.074 4.074 19 H 0.109 0.891 20 C -0.074 4.074 21 C -0.151 4.151 22 C -0.146 4.146 23 C -0.152 4.152 24 C -0.146 4.146 25 C -0.142 4.142 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.163 0.837 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.114 0.886 37 H 0.142 0.858 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.067 2.010 23.114 28.221 hybrid contribution 0.420 0.676 -0.941 1.233 sum -15.647 2.686 22.173 27.270 Atomic orbital electron populations 1.21660 0.92441 1.02328 1.02125 1.22633 0.96737 0.97735 0.94449 0.90385 1.22768 0.88601 0.97991 0.95899 0.92984 1.60364 1.24329 1.19519 1.26381 1.21644 0.96092 0.98943 0.87211 1.19427 0.94269 0.96327 0.94085 1.21419 0.99666 1.35323 1.00941 0.95080 1.26022 1.00826 0.96548 0.95840 1.70072 1.23454 1.48390 1.17271 0.85575 0.78379 0.79475 0.78668 1.19331 1.20911 1.16923 1.23179 1.02000 0.96071 0.94924 1.21396 0.97910 0.97118 0.90971 0.89062 1.19823 0.95643 0.97543 0.94390 1.21266 1.00407 1.00694 0.92711 1.21397 0.94977 0.99026 0.99166 1.21431 0.97468 0.98291 0.98050 1.21420 1.00191 1.00114 0.92881 1.21300 0.94501 0.98823 0.99543 0.91661 0.92202 0.91774 0.83721 0.92910 0.96506 0.96119 0.96078 0.92413 0.92370 0.88609 0.85817 0.84591 0.84354 0.84452 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.03 71.98 0.58 -1.73 16 2 C -0.10 -2.07 4.14 -10.27 -0.04 -2.11 16 3 H 0.08 1.67 7.91 -2.39 -0.02 1.65 16 4 C 0.06 1.53 3.78 45.50 0.17 1.71 16 5 H 0.05 1.45 7.82 -2.38 -0.02 1.43 16 6 N -0.67 -21.84 6.45 -488.53 -3.15 -24.99 16 7 C 0.09 3.66 5.47 86.30 0.47 4.13 16 8 C 0.00 -0.16 4.30 29.85 0.13 -0.03 16 9 C -0.54 -31.57 9.66 25.60 0.25 -31.32 16 10 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 11 C 0.00 0.26 5.47 84.65 0.46 0.73 16 12 N -0.95 -60.56 13.96 21.45 0.30 -60.26 16 13 Si 0.96 45.10 27.47 68.60 1.88 46.99 16 14 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 17 C -0.12 -3.02 6.90 31.18 0.22 -2.80 16 18 C -0.06 -1.23 3.86 -11.01 -0.04 -1.28 16 19 H 0.09 2.20 8.12 -2.39 -0.02 2.18 16 20 C -0.07 -1.50 4.51 -19.87 -0.09 -1.59 16 21 C -0.13 -2.53 9.72 22.27 0.22 -2.31 16 22 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 23 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 24 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 25 C -0.12 -2.25 7.13 22.27 0.16 -2.09 16 26 H 0.06 1.15 6.80 -2.39 -0.02 1.14 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.08 5.94 -2.39 -0.01 1.07 16 29 H 0.34 10.33 8.38 -89.70 -0.75 9.58 16 30 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.02 0.69 8.13 -2.39 -0.02 0.67 16 32 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 33 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 34 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 2.00 5.59 -2.39 -0.01 1.99 16 37 H 0.12 2.15 8.06 -2.91 -0.02 2.12 16 38 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 39 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 41 H 0.13 2.14 4.77 -2.90 -0.01 2.12 16 Total: -1.00 -66.47 322.94 2.38 -64.09 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.20 Total: 18.34 kcal Atomic # 6 Polarization: -47.31 SS G_CDS: 3.15 Total: -44.17 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -2.85 Total: -85.25 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.99 kcal Total: -66.47 2.38 -64.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361896141.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.610 kcal (2) G-P(sol) polarization free energy of solvation -66.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds