Wall clock time and date at job start Mon Mar 30 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 110.62478 * 2 1 4 4 C 1.55133 * 110.70827 * 236.70683 * 2 1 3 5 5 C 1.54903 * 101.65516 * 205.96483 * 4 2 1 6 6 N 1.47842 * 104.79608 * 37.06674 * 5 4 2 7 7 C 1.46899 * 110.99958 * 213.63759 * 6 5 4 8 8 H 1.09003 * 109.46985 * 74.41443 * 7 6 5 9 9 C 1.50699 * 109.47133 * 194.41445 * 7 6 5 10 10 H 1.07997 * 120.00574 * 24.76331 * 9 7 6 11 11 C 1.37882 * 120.00257 * 204.76709 * 9 7 6 12 12 N 1.31514 * 119.99832 * 4.45994 * 11 9 7 13 13 Si 1.86794 * 120.00313 * 184.46157 * 11 9 7 14 14 H 1.48497 * 109.47285 * 89.99802 * 13 11 9 15 15 H 1.48500 * 109.47341 * 210.00157 * 13 11 9 16 16 H 1.48508 * 109.47180 * 329.99657 * 13 11 9 17 17 C 1.50697 * 109.47400 * 314.41656 * 7 6 5 18 18 C 1.38241 * 119.99718 * 313.58832 * 17 7 6 19 19 C 1.38233 * 119.99978 * 179.78521 * 18 17 7 20 20 C 1.38238 * 119.99725 * 0.44603 * 19 18 17 21 21 C 1.38234 * 119.99984 * 359.81423 * 20 19 18 22 22 C 1.38226 * 120.00304 * 359.97069 * 21 20 19 23 23 C 1.47448 * 108.56663 * 335.90610 * 6 5 4 24 24 H 1.08998 * 109.88317 * 120.39642 * 23 6 5 25 25 C 1.53003 * 109.88622 * 241.42161 * 23 6 5 26 26 H 1.08994 * 109.46736 * 296.89505 * 1 2 3 27 27 H 1.09002 * 109.46818 * 56.89055 * 1 2 3 28 28 H 1.09000 * 109.46573 * 176.89491 * 1 2 3 29 29 H 1.09002 * 110.98888 * 324.05791 * 4 2 1 30 30 H 1.08999 * 110.99227 * 87.83273 * 4 2 1 31 31 H 1.09002 * 110.37008 * 278.23968 * 5 4 2 32 32 H 1.09000 * 110.37706 * 155.89889 * 5 4 2 33 33 H 0.97002 * 120.00046 * 180.02562 * 12 11 9 34 34 H 1.07999 * 119.99696 * 0.02562 * 18 17 7 35 35 H 1.07996 * 120.00457 * 180.27640 * 19 18 17 36 36 H 1.08003 * 119.99848 * 179.82622 * 20 19 18 37 37 H 1.08007 * 119.99572 * 179.97438 * 21 20 19 38 38 H 1.07999 * 120.00090 * 180.02562 * 22 21 20 39 39 H 1.08997 * 109.47250 * 55.83235 * 25 23 6 40 40 H 1.09000 * 109.46595 * 175.82911 * 25 23 6 41 41 H 1.09000 * 109.46836 * 295.82836 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9140 1.0202 0.0000 4 6 2.0786 -0.7965 -1.2129 5 6 3.4651 -1.2477 -0.6899 6 7 3.2490 -1.5489 0.7413 7 6 4.4406 -1.2190 1.5345 8 1 4.5174 -0.1370 1.6420 9 6 4.3282 -1.8525 2.8972 10 1 3.7135 -2.7296 3.0360 11 6 5.0100 -1.3124 3.9670 12 7 5.6877 -0.1951 3.8185 13 14 4.9714 -2.1675 5.6273 14 1 6.0982 -3.1307 5.7144 15 1 5.0994 -1.1569 6.7078 16 1 3.6856 -2.8948 5.7797 17 6 5.6693 -1.7429 0.8368 18 6 5.6836 -3.0316 0.3368 19 6 6.8091 -3.5107 -0.3071 20 6 7.9236 -2.7042 -0.4428 21 6 7.9112 -1.4174 0.0620 22 6 6.7842 -0.9368 0.7019 23 6 2.0756 -0.7883 1.2092 24 1 1.3133 -1.4736 1.5796 25 6 2.4910 0.1779 2.3204 26 1 -0.3632 0.4649 0.9165 27 1 -0.3633 0.5614 -0.8608 28 1 -0.3632 -1.0262 -0.0557 29 1 1.4460 -1.6563 -1.4338 30 1 2.1807 -0.1545 -2.0878 31 1 4.1930 -0.4442 -0.8029 32 1 3.7985 -2.1402 -1.2194 33 1 6.1677 0.1847 4.5710 34 1 4.8140 -3.6627 0.4458 35 1 6.8187 -4.5159 -0.7017 36 1 8.8040 -3.0795 -0.9434 37 1 8.7822 -0.7875 -0.0437 38 1 6.7744 0.0687 1.0959 39 1 3.2922 0.8231 1.9602 40 1 1.6354 0.7882 2.6097 41 1 2.8411 -0.3892 3.1829 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380731264.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:48 Heat of formation + Delta-G solvation = 30.336159 kcal Electronic energy + Delta-G solvation = -20392.765818 eV Core-core repulsion = 17658.289716 eV Total energy + Delta-G solvation = -2734.476102 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.33529 -37.72986 -34.04381 -32.02810 -30.63046 -30.03246 -29.85187 -26.92975 -25.91156 -23.48559 -22.75123 -21.50948 -20.86284 -19.75029 -18.43110 -16.38398 -15.91154 -15.18409 -15.05798 -14.36047 -14.08095 -13.62137 -13.41646 -13.19607 -12.82814 -12.47537 -12.44866 -12.00976 -11.75010 -11.65984 -11.60253 -11.22019 -11.07665 -10.87348 -10.65988 -10.47252 -10.35898 -10.14453 -10.09651 -9.93532 -9.76348 -9.46520 -9.30288 -8.45619 -7.95843 -7.59514 -7.07138 -6.08274 -4.06890 2.37090 2.39550 3.28761 3.35808 3.38820 4.36912 4.74383 5.06990 5.10984 5.25265 5.28811 5.41576 5.71488 5.81548 5.84664 5.90382 5.93448 5.99032 5.99445 6.16273 6.27347 6.34750 6.38840 6.45098 6.46352 6.51025 6.60424 6.64610 6.69087 6.79120 6.93450 7.00722 7.12309 7.37437 7.41206 7.44831 7.62245 7.81295 7.83173 7.92050 8.14098 8.24635 8.55726 9.00540 9.51550 10.97254 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013567 B = 0.010689 C = 0.006795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.274462 B = 2618.908813 C = 4119.797670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 H 0.068 0.932 4 C -0.125 4.125 5 C 0.043 3.957 6 N -0.520 5.520 7 C 0.223 3.777 8 H 0.051 0.949 9 C -0.485 4.485 10 H 0.064 0.936 11 C 0.064 3.936 12 N -0.883 5.883 13 Si 0.890 3.110 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.025 4.025 18 C -0.105 4.105 19 C -0.138 4.138 20 C -0.153 4.153 21 C -0.133 4.133 22 C -0.110 4.110 23 C 0.093 3.907 24 H 0.069 0.931 25 C -0.171 4.171 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.067 0.933 33 H 0.262 0.738 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.053 0.947 40 H 0.025 0.975 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.642 -0.031 -7.638 8.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.135 4.135 3 H 0.087 0.913 4 C -0.163 4.163 5 C -0.085 4.085 6 N -0.245 5.245 7 C 0.117 3.883 8 H 0.069 0.931 9 C -0.523 4.523 10 H 0.082 0.918 11 C -0.139 4.139 12 N -0.520 5.520 13 Si 0.718 3.282 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.197 1.197 17 C -0.026 4.026 18 C -0.124 4.124 19 C -0.156 4.156 20 C -0.171 4.171 21 C -0.151 4.151 22 C -0.129 4.129 23 C -0.015 4.015 24 H 0.087 0.913 25 C -0.228 4.228 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.136 0.864 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.617 -0.426 -7.445 8.288 hybrid contribution 0.499 0.410 0.922 1.126 sum -3.117 -0.016 -6.524 7.230 Atomic orbital electron populations 1.21699 0.95303 1.01411 1.00894 1.22537 0.95452 0.99295 0.96193 0.91320 1.22754 0.97394 0.99262 0.96903 1.22959 0.95206 0.98923 0.91382 1.63832 1.05443 1.54696 1.00484 1.18864 0.81994 0.96981 0.90479 0.93111 1.20890 1.27847 1.12626 0.90919 0.91765 1.24927 0.95490 0.94655 0.98794 1.69904 1.32081 1.18370 1.31665 0.86616 0.78636 0.79427 0.83554 1.20687 1.21336 1.19732 1.20563 0.97397 0.93220 0.91454 1.20994 0.97473 0.96019 0.97887 1.20980 0.94290 0.98816 1.01518 1.20791 0.98011 0.95000 1.03315 1.20957 0.97978 0.95870 1.00324 1.21079 0.93191 1.00402 0.98183 1.22150 0.93102 0.93114 0.93164 0.91326 1.22482 0.98959 0.99425 1.01908 0.92881 0.93452 0.92719 0.91375 0.92227 0.94664 0.91428 0.92833 0.86390 0.87774 0.87945 0.87794 0.86518 0.92802 0.95573 0.87585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.14 37.16 0.34 -1.45 16 2 C -0.12 -1.83 3.07 -88.80 -0.27 -2.10 16 3 H 0.07 1.12 7.86 -51.93 -0.41 0.72 16 4 C -0.13 -1.91 6.52 -24.60 -0.16 -2.07 16 5 C 0.04 0.79 5.32 -2.30 -0.01 0.78 16 6 N -0.52 -10.77 4.62 -218.21 -1.01 -11.78 16 7 C 0.22 5.20 1.14 -70.02 -0.08 5.12 16 8 H 0.05 1.31 4.72 -51.93 -0.25 1.06 16 9 C -0.48 -12.39 5.94 -34.44 -0.20 -12.59 16 10 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 11 C 0.06 1.68 4.88 -17.82 -0.09 1.59 16 12 N -0.88 -23.58 12.93 55.43 0.72 -22.86 16 13 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 C -0.03 -0.57 3.51 -104.62 -0.37 -0.93 16 18 C -0.11 -2.21 8.00 -39.58 -0.32 -2.53 16 19 C -0.14 -2.58 10.05 -39.58 -0.40 -2.98 16 20 C -0.15 -2.78 10.05 -39.58 -0.40 -3.17 16 21 C -0.13 -2.58 10.05 -39.59 -0.40 -2.97 16 22 C -0.11 -2.42 9.67 -39.59 -0.38 -2.80 16 23 C 0.09 1.78 3.41 -66.72 -0.23 1.55 16 24 H 0.07 1.33 7.82 -51.93 -0.41 0.92 16 25 C -0.17 -3.52 7.75 37.16 0.29 -3.24 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.07 0.99 8.02 -51.93 -0.42 0.58 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.69 7.44 -51.93 -0.39 0.30 16 32 H 0.07 1.22 7.31 -51.93 -0.38 0.84 16 33 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.12 2.48 7.92 -52.49 -0.42 2.07 16 35 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 37 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 38 H 0.12 2.68 7.99 -52.49 -0.42 2.26 16 39 H 0.05 1.20 6.26 -51.93 -0.32 0.87 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.11 2.51 4.98 -51.93 -0.26 2.25 16 LS Contribution 318.18 15.07 4.79 4.79 Total: -1.00 -26.12 318.18 -9.78 -35.90 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.59 Total: 5.98 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: -2.68 Total: -27.81 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.29 Total: -34.64 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -26.12 -9.78 -35.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380731264.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.236 kcal (2) G-P(sol) polarization free energy of solvation -26.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds