Wall clock time and date at job start Mon Mar 30 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 110.62478 * 2 1 4 4 C 1.55133 * 110.70827 * 236.70683 * 2 1 3 5 5 C 1.54903 * 101.65516 * 205.96483 * 4 2 1 6 6 N 1.47842 * 104.79608 * 37.06674 * 5 4 2 7 7 C 1.46899 * 110.99958 * 213.63759 * 6 5 4 8 8 H 1.09003 * 109.46985 * 74.41443 * 7 6 5 9 9 C 1.50699 * 109.47133 * 194.41445 * 7 6 5 10 10 H 1.07997 * 120.00574 * 24.76331 * 9 7 6 11 11 C 1.37882 * 120.00257 * 204.76709 * 9 7 6 12 12 N 1.31514 * 119.99832 * 4.45994 * 11 9 7 13 13 Si 1.86794 * 120.00313 * 184.46157 * 11 9 7 14 14 H 1.48497 * 109.47285 * 89.99802 * 13 11 9 15 15 H 1.48500 * 109.47341 * 210.00157 * 13 11 9 16 16 H 1.48508 * 109.47180 * 329.99657 * 13 11 9 17 17 C 1.50697 * 109.47400 * 314.41656 * 7 6 5 18 18 C 1.38241 * 119.99718 * 313.58832 * 17 7 6 19 19 C 1.38233 * 119.99978 * 179.78521 * 18 17 7 20 20 C 1.38238 * 119.99725 * 0.44603 * 19 18 17 21 21 C 1.38234 * 119.99984 * 359.81423 * 20 19 18 22 22 C 1.38226 * 120.00304 * 359.97069 * 21 20 19 23 23 C 1.47448 * 108.56663 * 335.90610 * 6 5 4 24 24 H 1.08998 * 109.88317 * 120.39642 * 23 6 5 25 25 C 1.53003 * 109.88622 * 241.42161 * 23 6 5 26 26 H 1.08994 * 109.46736 * 296.89505 * 1 2 3 27 27 H 1.09002 * 109.46818 * 56.89055 * 1 2 3 28 28 H 1.09000 * 109.46573 * 176.89491 * 1 2 3 29 29 H 1.09002 * 110.98888 * 324.05791 * 4 2 1 30 30 H 1.08999 * 110.99227 * 87.83273 * 4 2 1 31 31 H 1.09002 * 110.37008 * 278.23968 * 5 4 2 32 32 H 1.09000 * 110.37706 * 155.89889 * 5 4 2 33 33 H 0.97002 * 120.00046 * 180.02562 * 12 11 9 34 34 H 1.07999 * 119.99696 * 0.02562 * 18 17 7 35 35 H 1.07996 * 120.00457 * 180.27640 * 19 18 17 36 36 H 1.08003 * 119.99848 * 179.82622 * 20 19 18 37 37 H 1.08007 * 119.99572 * 179.97438 * 21 20 19 38 38 H 1.07999 * 120.00090 * 180.02562 * 22 21 20 39 39 H 1.08997 * 109.47250 * 55.83235 * 25 23 6 40 40 H 1.09000 * 109.46595 * 175.82911 * 25 23 6 41 41 H 1.09000 * 109.46836 * 295.82836 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9140 1.0202 0.0000 4 6 2.0786 -0.7965 -1.2129 5 6 3.4651 -1.2477 -0.6899 6 7 3.2490 -1.5489 0.7413 7 6 4.4406 -1.2190 1.5345 8 1 4.5174 -0.1370 1.6420 9 6 4.3282 -1.8525 2.8972 10 1 3.7135 -2.7296 3.0360 11 6 5.0100 -1.3124 3.9670 12 7 5.6877 -0.1951 3.8185 13 14 4.9714 -2.1675 5.6273 14 1 6.0982 -3.1307 5.7144 15 1 5.0994 -1.1569 6.7078 16 1 3.6856 -2.8948 5.7797 17 6 5.6693 -1.7429 0.8368 18 6 5.6836 -3.0316 0.3368 19 6 6.8091 -3.5107 -0.3071 20 6 7.9236 -2.7042 -0.4428 21 6 7.9112 -1.4174 0.0620 22 6 6.7842 -0.9368 0.7019 23 6 2.0756 -0.7883 1.2092 24 1 1.3133 -1.4736 1.5796 25 6 2.4910 0.1779 2.3204 26 1 -0.3632 0.4649 0.9165 27 1 -0.3633 0.5614 -0.8608 28 1 -0.3632 -1.0262 -0.0557 29 1 1.4460 -1.6563 -1.4338 30 1 2.1807 -0.1545 -2.0878 31 1 4.1930 -0.4442 -0.8029 32 1 3.7985 -2.1402 -1.2194 33 1 6.1677 0.1847 4.5710 34 1 4.8140 -3.6627 0.4458 35 1 6.8187 -4.5159 -0.7017 36 1 8.8040 -3.0795 -0.9434 37 1 8.7822 -0.7875 -0.0437 38 1 6.7744 0.0687 1.0959 39 1 3.2922 0.8231 1.9602 40 1 1.6354 0.7882 2.6097 41 1 2.8411 -0.3892 3.1829 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380731264.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:48 Heat of formation + Delta-G solvation = 17.409593 kcal Electronic energy + Delta-G solvation = -20393.326356 eV Core-core repulsion = 17658.289716 eV Total energy + Delta-G solvation = -2735.036640 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.90890 -39.25166 -35.72091 -33.75060 -32.21241 -31.57093 -31.37947 -28.52760 -27.58630 -25.09955 -24.34100 -23.09056 -22.38921 -21.14437 -20.07218 -18.28816 -17.50892 -16.88154 -16.52663 -16.13920 -15.59712 -15.17598 -14.88810 -14.75296 -14.37120 -14.01750 -13.84928 -13.51994 -13.49976 -13.20691 -13.10171 -12.81392 -12.61904 -12.54489 -12.43286 -12.20016 -11.77697 -11.68980 -11.58479 -11.46515 -11.33961 -11.10839 -11.08830 -10.42927 -9.54097 -9.22785 -8.76355 -8.06178 -6.10392 0.77496 0.82429 1.38959 1.41855 1.49486 2.42624 3.10444 3.29858 3.54164 3.80813 3.97576 4.05130 4.30139 4.32919 4.45018 4.50556 4.60000 4.64836 4.68709 4.73394 4.80052 4.89294 4.94569 4.96943 5.01885 5.06201 5.19408 5.22668 5.26880 5.33509 5.41979 5.43903 5.55389 5.65914 5.77013 5.82598 5.84728 5.86173 6.17561 6.19860 6.41784 6.54714 6.81545 7.01698 7.50399 8.96891 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013567 B = 0.010689 C = 0.006795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.274462 B = 2618.908813 C = 4119.797670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.109 4.109 3 H 0.061 0.939 4 C -0.114 4.114 5 C 0.045 3.955 6 N -0.530 5.530 7 C 0.235 3.765 8 H 0.019 0.981 9 C -0.485 4.485 10 H 0.048 0.952 11 C 0.026 3.974 12 N -0.906 5.906 13 Si 0.938 3.062 14 H -0.284 1.284 15 H -0.285 1.285 16 H -0.269 1.269 17 C -0.047 4.047 18 C -0.119 4.119 19 C -0.132 4.132 20 C -0.145 4.145 21 C -0.134 4.134 22 C -0.134 4.134 23 C 0.088 3.912 24 H 0.068 0.932 25 C -0.157 4.157 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.016 0.984 32 H 0.069 0.931 33 H 0.259 0.741 34 H 0.111 0.889 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.028 0.972 40 H 0.046 0.954 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.872 -1.195 -9.379 10.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.128 4.128 3 H 0.079 0.921 4 C -0.151 4.151 5 C -0.083 4.083 6 N -0.254 5.254 7 C 0.128 3.872 8 H 0.036 0.964 9 C -0.524 4.524 10 H 0.066 0.934 11 C -0.174 4.174 12 N -0.545 5.545 13 Si 0.765 3.235 14 H -0.210 1.210 15 H -0.211 1.211 16 H -0.193 1.193 17 C -0.048 4.048 18 C -0.137 4.137 19 C -0.150 4.150 20 C -0.163 4.163 21 C -0.152 4.152 22 C -0.153 4.153 23 C -0.020 4.020 24 H 0.086 0.914 25 C -0.214 4.214 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.034 0.966 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.156 0.844 36 H 0.161 0.839 37 H 0.147 0.853 38 H 0.110 0.890 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.861 -1.596 -9.192 10.097 hybrid contribution 0.601 0.755 1.407 1.706 sum -3.260 -0.841 -7.786 8.482 Atomic orbital electron populations 1.21655 0.92703 1.02260 1.02041 1.22464 0.97503 0.98269 0.94614 0.92094 1.22735 0.95221 0.99991 0.97189 1.22951 0.96856 0.98406 0.90109 1.63758 1.04883 1.55156 1.01619 1.18530 0.83662 0.94752 0.90256 0.96363 1.20971 1.27158 1.11789 0.92454 0.93366 1.25452 0.95574 0.95169 1.01216 1.70019 1.33054 1.19394 1.32005 0.85862 0.78397 0.78483 0.80776 1.21029 1.21088 1.19327 1.20511 0.97091 0.94286 0.92897 1.21008 0.98527 0.95263 0.98898 1.21359 0.93287 1.00339 0.99967 1.21232 0.99056 0.93979 1.01995 1.21255 0.97644 0.97026 0.99237 1.21034 0.94624 0.99667 0.99989 1.22233 0.92631 0.93020 0.94153 0.91429 1.22265 0.98746 0.99187 1.01206 0.92764 0.91207 0.92132 0.89933 0.89924 0.96601 0.91234 0.93215 0.87052 0.84350 0.83914 0.85342 0.89024 0.95274 0.93520 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.14 71.98 0.66 -2.40 16 2 C -0.11 -3.32 3.07 -9.62 -0.03 -3.35 16 3 H 0.06 1.95 7.86 -2.38 -0.02 1.94 16 4 C -0.11 -3.24 6.52 31.98 0.21 -3.03 16 5 C 0.04 1.63 5.32 86.77 0.46 2.10 16 6 N -0.53 -22.43 4.62 -844.29 -3.90 -26.33 16 7 C 0.23 11.46 1.14 43.42 0.05 11.51 16 8 H 0.02 1.03 4.72 -2.39 -0.01 1.02 16 9 C -0.49 -25.82 5.94 25.60 0.15 -25.67 16 10 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 11 C 0.03 1.41 4.88 84.66 0.41 1.82 16 12 N -0.91 -50.63 12.93 21.45 0.28 -50.35 16 13 Si 0.94 43.71 29.54 68.60 2.03 45.73 16 14 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 15 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 17 C -0.05 -2.17 3.51 -19.87 -0.07 -2.24 16 18 C -0.12 -4.93 8.00 22.27 0.18 -4.76 16 19 C -0.13 -4.57 10.05 22.27 0.22 -4.35 16 20 C -0.14 -4.78 10.05 22.27 0.22 -4.56 16 21 C -0.13 -4.99 10.05 22.27 0.22 -4.77 16 22 C -0.13 -6.08 9.67 22.27 0.22 -5.86 16 23 C 0.09 3.39 3.41 45.26 0.15 3.54 16 24 H 0.07 2.61 7.82 -2.39 -0.02 2.59 16 25 C -0.16 -6.74 7.75 71.98 0.56 -6.18 16 26 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 29 H 0.08 2.15 8.02 -2.39 -0.02 2.13 16 30 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 31 H 0.02 0.63 7.44 -2.39 -0.02 0.61 16 32 H 0.07 2.48 7.31 -2.39 -0.02 2.46 16 33 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 34 H 0.11 4.69 7.92 -2.91 -0.02 4.67 16 35 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 36 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 37 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 38 H 0.09 4.51 7.99 -2.91 -0.02 4.48 16 39 H 0.03 1.37 6.26 -2.39 -0.01 1.35 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.07 3.65 4.98 -2.39 -0.01 3.63 16 Total: -1.00 -58.74 318.18 3.01 -55.73 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.98 Total: 23.42 kcal Atomic # 6 Polarization: -51.82 SS G_CDS: 3.62 Total: -48.20 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -3.62 Total: -76.68 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -58.74 3.01 -55.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380731264.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.140 kcal (2) G-P(sol) polarization free energy of solvation -58.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds