Wall clock time and date at job start Mon Mar 30 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.62965 * 2 1 4 4 C 1.55137 * 110.85708 * 236.78242 * 2 1 3 5 5 C 1.54909 * 101.65251 * 205.89183 * 4 2 1 6 6 N 1.47841 * 104.79409 * 37.07518 * 5 4 2 7 7 C 1.46902 * 110.99938 * 213.63409 * 6 5 4 8 8 H 1.09001 * 109.47236 * 74.75683 * 7 6 5 9 9 C 1.50703 * 109.46995 * 314.75596 * 7 6 5 10 10 H 1.07997 * 120.00257 * 304.74640 * 9 7 6 11 11 C 1.37878 * 119.99665 * 124.75127 * 9 7 6 12 12 N 1.31514 * 120.00460 * 354.74161 * 11 9 7 13 13 Si 1.86801 * 119.99678 * 174.74321 * 11 9 7 14 14 H 1.48498 * 109.47358 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47260 * 119.99920 * 13 11 9 16 16 H 1.48500 * 109.47249 * 239.99627 * 13 11 9 17 17 C 1.50697 * 109.47372 * 194.75881 * 7 6 5 18 18 C 1.38239 * 120.00024 * 214.74699 * 17 7 6 19 19 C 1.38235 * 119.99929 * 179.97438 * 18 17 7 20 20 C 1.38240 * 119.99924 * 359.97438 * 19 18 17 21 21 C 1.38232 * 120.00029 * 359.97438 * 20 19 18 22 22 C 1.38228 * 120.00277 * 359.97438 * 21 20 19 23 23 C 1.47445 * 108.57039 * 335.89949 * 6 5 4 24 24 H 1.09000 * 109.88863 * 120.39408 * 23 6 5 25 25 C 1.52999 * 109.89037 * 241.58761 * 23 6 5 26 26 H 1.09001 * 109.47751 * 296.90091 * 1 2 3 27 27 H 1.08997 * 109.47175 * 56.90204 * 1 2 3 28 28 H 1.09009 * 109.47416 * 176.89985 * 1 2 3 29 29 H 1.08990 * 110.99234 * 323.98826 * 4 2 1 30 30 H 1.09007 * 110.98835 * 87.77210 * 4 2 1 31 31 H 1.08996 * 110.37687 * 278.24620 * 5 4 2 32 32 H 1.09007 * 110.37036 * 155.90094 * 5 4 2 33 33 H 0.96993 * 120.00338 * 185.00778 * 12 11 9 34 34 H 1.07997 * 119.99924 * 0.25244 * 18 17 7 35 35 H 1.07998 * 120.00259 * 179.97438 * 19 18 17 36 36 H 1.08001 * 119.99863 * 179.97438 * 20 19 18 37 37 H 1.08003 * 120.00041 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.00309 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.47171 * 57.06076 * 25 23 6 40 40 H 1.09000 * 109.47122 * 177.06028 * 25 23 6 41 41 H 1.08998 * 109.47109 * 297.06401 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9140 1.0201 0.0000 4 6 2.0823 -0.7942 -1.2128 5 6 3.4691 -1.2424 -0.6879 6 7 3.2514 -1.5455 0.7426 7 6 4.4410 -1.2135 1.5380 8 1 4.5117 -0.1318 1.6519 9 6 5.6728 -1.7265 0.8376 10 1 5.7458 -2.7698 0.5681 11 6 6.7067 -0.8639 0.5409 12 7 6.5765 0.4238 0.7747 13 14 8.2924 -1.5241 -0.1933 14 1 8.1868 -2.9963 -0.3571 15 1 8.5249 -0.8937 -1.5175 16 1 9.4264 -1.2073 0.7116 17 6 4.3319 -1.8556 2.8970 18 6 4.8374 -1.2092 4.0095 19 6 4.7369 -1.7979 5.2561 20 6 4.1302 -3.0329 5.3904 21 6 3.6237 -3.6787 4.2781 22 6 3.7233 -3.0896 3.0316 23 6 2.0755 -0.7883 1.2094 24 1 1.3142 -1.4757 1.5779 25 6 2.4875 0.1808 2.3194 26 1 -0.3634 0.4650 0.9164 27 1 -0.3633 0.5612 -0.8609 28 1 -0.3634 -1.0262 -0.0556 29 1 1.4521 -1.6551 -1.4355 30 1 2.1843 -0.1510 -2.0870 31 1 4.1953 -0.4372 -0.7990 32 1 3.8054 -2.1337 -1.2178 33 1 7.2735 1.0396 0.4997 34 1 5.3070 -0.2422 3.9052 35 1 5.1322 -1.2932 6.1252 36 1 4.0520 -3.4930 6.3643 37 1 3.1501 -4.6437 4.3830 38 1 3.3280 -3.5943 2.1626 39 1 3.2715 0.8426 1.9514 40 1 1.6246 0.7734 2.6230 41 1 2.8600 -0.3833 3.1744 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380731272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:57 Heat of formation + Delta-G solvation = 29.512114 kcal Electronic energy + Delta-G solvation = -20410.034656 eV Core-core repulsion = 17675.522821 eV Total energy + Delta-G solvation = -2734.511835 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.37316 -37.73414 -33.98225 -31.96468 -30.95185 -29.97598 -29.71717 -27.31006 -25.65842 -23.43740 -23.01402 -21.57341 -20.41998 -19.91867 -18.45445 -16.52604 -15.90816 -15.16716 -14.80923 -14.51199 -14.11398 -13.72288 -13.46038 -13.04967 -12.91013 -12.57763 -12.52395 -12.28538 -11.86038 -11.60796 -11.29937 -11.10614 -11.05707 -11.00455 -10.93948 -10.53167 -10.31899 -10.19095 -9.99682 -9.92759 -9.81479 -9.44190 -9.25944 -8.66647 -8.03949 -7.59160 -6.97662 -6.14414 -4.18860 2.28123 2.33660 3.23038 3.32090 3.37461 4.32400 4.70780 5.03055 5.15409 5.28726 5.35954 5.47159 5.66175 5.77179 5.85525 5.90943 5.96882 6.01629 6.05438 6.14934 6.21812 6.25310 6.33000 6.43309 6.46221 6.52632 6.59889 6.63786 6.86908 6.89104 6.92783 6.97528 7.04077 7.16407 7.32401 7.38061 7.51627 7.73949 7.77993 7.80932 8.04265 8.34960 8.61756 8.97869 9.45404 10.90129 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.011119 C = 0.006891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.968160 B = 2517.659091 C = 4062.003020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 H 0.070 0.930 4 C -0.130 4.130 5 C 0.072 3.928 6 N -0.526 5.526 7 C 0.206 3.794 8 H 0.073 0.927 9 C -0.495 4.495 10 H 0.060 0.940 11 C 0.068 3.932 12 N -0.890 5.890 13 Si 0.894 3.106 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.283 1.283 17 C -0.013 4.013 18 C -0.125 4.125 19 C -0.129 4.129 20 C -0.156 4.156 21 C -0.132 4.132 22 C -0.111 4.111 23 C 0.077 3.923 24 H 0.065 0.935 25 C -0.177 4.177 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.264 0.736 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.066 0.934 40 H 0.038 0.962 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.977 -1.166 1.766 8.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.168 4.168 5 C -0.056 4.056 6 N -0.250 5.250 7 C 0.101 3.899 8 H 0.091 0.909 9 C -0.533 4.533 10 H 0.078 0.922 11 C -0.135 4.135 12 N -0.528 5.528 13 Si 0.721 3.279 14 H -0.195 1.195 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.015 4.015 18 C -0.144 4.144 19 C -0.147 4.147 20 C -0.174 4.174 21 C -0.150 4.150 22 C -0.129 4.129 23 C -0.032 4.032 24 H 0.083 0.917 25 C -0.234 4.234 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.141 0.859 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.922 -1.535 1.873 8.284 hybrid contribution 1.173 0.566 -0.391 1.360 sum -6.749 -0.969 1.482 6.977 Atomic orbital electron populations 1.21714 0.95553 1.01310 1.00774 1.22439 0.95004 0.99417 0.96170 0.91195 1.22833 0.98300 0.98964 0.96748 1.22568 0.94034 1.00089 0.88925 1.63915 1.04514 1.53974 1.02611 1.18969 0.87278 0.97424 0.86252 0.90906 1.21008 0.99490 0.95779 1.37045 0.92181 1.24993 0.98555 0.94889 0.95037 1.69864 1.34589 1.01784 1.46611 0.86499 0.83321 0.79453 0.78607 1.19508 1.20966 1.20886 1.20481 0.91302 0.93673 0.96004 1.21020 1.00728 1.00543 0.92109 1.20940 1.00758 0.95971 0.97050 1.20802 1.02504 0.96357 0.97770 1.21033 1.01210 0.99279 0.93479 1.21046 0.99665 0.95754 0.96468 1.22340 0.94490 0.93026 0.93357 0.91660 1.22556 1.00657 1.00064 1.00158 0.93149 0.93363 0.92814 0.91853 0.92256 0.92361 0.91791 0.92649 0.86710 0.87607 0.87824 0.87688 0.85941 0.91560 0.94255 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.14 37.15 0.34 -1.48 16 2 C -0.11 -1.82 3.06 -88.80 -0.27 -2.09 16 3 H 0.07 1.21 7.85 -51.93 -0.41 0.80 16 4 C -0.13 -2.17 6.53 -24.59 -0.16 -2.33 16 5 C 0.07 1.47 5.57 -2.30 -0.01 1.46 16 6 N -0.53 -11.10 4.07 -218.20 -0.89 -11.99 16 7 C 0.21 4.86 1.50 -70.02 -0.10 4.75 16 8 H 0.07 1.88 4.21 -51.93 -0.22 1.66 16 9 C -0.49 -12.90 6.83 -34.44 -0.24 -13.13 16 10 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 11 C 0.07 1.80 5.44 -17.82 -0.10 1.70 16 12 N -0.89 -24.14 12.61 55.43 0.70 -23.44 16 13 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C -0.01 -0.30 2.81 -104.62 -0.29 -0.59 16 18 C -0.13 -2.65 8.47 -39.58 -0.34 -2.98 16 19 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 20 C -0.16 -2.71 10.05 -39.58 -0.40 -3.11 16 21 C -0.13 -2.38 10.05 -39.59 -0.40 -2.78 16 22 C -0.11 -2.27 9.30 -39.58 -0.37 -2.64 16 23 C 0.08 1.42 3.40 -66.72 -0.23 1.19 16 24 H 0.07 1.20 7.82 -51.93 -0.41 0.79 16 25 C -0.18 -3.33 7.73 37.16 0.29 -3.04 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.70 8.11 -51.92 -0.42 0.28 16 29 H 0.06 0.99 8.03 -51.93 -0.42 0.57 16 30 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.06 1.38 7.41 -51.93 -0.38 0.99 16 32 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 33 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 34 H 0.11 2.52 8.06 -52.49 -0.42 2.09 16 35 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.12 2.53 7.55 -52.49 -0.40 2.14 16 39 H 0.07 1.39 6.35 -51.93 -0.33 1.06 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.43 4.42 -51.93 -0.23 1.20 16 LS Contribution 318.29 15.07 4.80 4.80 Total: -1.00 -26.46 318.29 -9.65 -36.11 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.56 Total: 6.57 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: -2.67 Total: -27.85 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.19 Total: -35.43 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.46 -9.65 -36.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380731272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.624 kcal (2) G-P(sol) polarization free energy of solvation -26.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds