Wall clock time and date at job start Mon Mar 30 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.62965 * 2 1 4 4 C 1.55137 * 110.85708 * 236.78242 * 2 1 3 5 5 C 1.54909 * 101.65251 * 205.89183 * 4 2 1 6 6 N 1.47841 * 104.79409 * 37.07518 * 5 4 2 7 7 C 1.46902 * 110.99938 * 213.63409 * 6 5 4 8 8 H 1.09001 * 109.47236 * 74.75683 * 7 6 5 9 9 C 1.50703 * 109.46995 * 314.75596 * 7 6 5 10 10 H 1.07997 * 120.00257 * 304.74640 * 9 7 6 11 11 C 1.37878 * 119.99665 * 124.75127 * 9 7 6 12 12 N 1.31514 * 120.00460 * 354.74161 * 11 9 7 13 13 Si 1.86801 * 119.99678 * 174.74321 * 11 9 7 14 14 H 1.48498 * 109.47358 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47260 * 119.99920 * 13 11 9 16 16 H 1.48500 * 109.47249 * 239.99627 * 13 11 9 17 17 C 1.50697 * 109.47372 * 194.75881 * 7 6 5 18 18 C 1.38239 * 120.00024 * 214.74699 * 17 7 6 19 19 C 1.38235 * 119.99929 * 179.97438 * 18 17 7 20 20 C 1.38240 * 119.99924 * 359.97438 * 19 18 17 21 21 C 1.38232 * 120.00029 * 359.97438 * 20 19 18 22 22 C 1.38228 * 120.00277 * 359.97438 * 21 20 19 23 23 C 1.47445 * 108.57039 * 335.89949 * 6 5 4 24 24 H 1.09000 * 109.88863 * 120.39408 * 23 6 5 25 25 C 1.52999 * 109.89037 * 241.58761 * 23 6 5 26 26 H 1.09001 * 109.47751 * 296.90091 * 1 2 3 27 27 H 1.08997 * 109.47175 * 56.90204 * 1 2 3 28 28 H 1.09009 * 109.47416 * 176.89985 * 1 2 3 29 29 H 1.08990 * 110.99234 * 323.98826 * 4 2 1 30 30 H 1.09007 * 110.98835 * 87.77210 * 4 2 1 31 31 H 1.08996 * 110.37687 * 278.24620 * 5 4 2 32 32 H 1.09007 * 110.37036 * 155.90094 * 5 4 2 33 33 H 0.96993 * 120.00338 * 185.00778 * 12 11 9 34 34 H 1.07997 * 119.99924 * 0.25244 * 18 17 7 35 35 H 1.07998 * 120.00259 * 179.97438 * 19 18 17 36 36 H 1.08001 * 119.99863 * 179.97438 * 20 19 18 37 37 H 1.08003 * 120.00041 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.00309 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.47171 * 57.06076 * 25 23 6 40 40 H 1.09000 * 109.47122 * 177.06028 * 25 23 6 41 41 H 1.08998 * 109.47109 * 297.06401 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9140 1.0201 0.0000 4 6 2.0823 -0.7942 -1.2128 5 6 3.4691 -1.2424 -0.6879 6 7 3.2514 -1.5455 0.7426 7 6 4.4410 -1.2135 1.5380 8 1 4.5117 -0.1318 1.6519 9 6 5.6728 -1.7265 0.8376 10 1 5.7458 -2.7698 0.5681 11 6 6.7067 -0.8639 0.5409 12 7 6.5765 0.4238 0.7747 13 14 8.2924 -1.5241 -0.1933 14 1 8.1868 -2.9963 -0.3571 15 1 8.5249 -0.8937 -1.5175 16 1 9.4264 -1.2073 0.7116 17 6 4.3319 -1.8556 2.8970 18 6 4.8374 -1.2092 4.0095 19 6 4.7369 -1.7979 5.2561 20 6 4.1302 -3.0329 5.3904 21 6 3.6237 -3.6787 4.2781 22 6 3.7233 -3.0896 3.0316 23 6 2.0755 -0.7883 1.2094 24 1 1.3142 -1.4757 1.5779 25 6 2.4875 0.1808 2.3194 26 1 -0.3634 0.4650 0.9164 27 1 -0.3633 0.5612 -0.8609 28 1 -0.3634 -1.0262 -0.0556 29 1 1.4521 -1.6551 -1.4355 30 1 2.1843 -0.1510 -2.0870 31 1 4.1953 -0.4372 -0.7990 32 1 3.8054 -2.1337 -1.2178 33 1 7.2735 1.0396 0.4997 34 1 5.3070 -0.2422 3.9052 35 1 5.1322 -1.2932 6.1252 36 1 4.0520 -3.4930 6.3643 37 1 3.1501 -4.6437 4.3830 38 1 3.3280 -3.5943 2.1626 39 1 3.2715 0.8426 1.9514 40 1 1.6246 0.7734 2.6230 41 1 2.8600 -0.3833 3.1744 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380731272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:56 Heat of formation + Delta-G solvation = 16.569070 kcal Electronic energy + Delta-G solvation = -20410.595909 eV Core-core repulsion = 17675.522821 eV Total energy + Delta-G solvation = -2735.073088 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.96018 -39.23096 -35.68116 -33.76155 -32.47927 -31.49132 -31.22734 -28.89146 -27.37351 -25.09528 -24.55657 -23.09501 -21.96916 -21.40064 -20.07115 -18.45170 -17.45119 -16.85809 -16.40952 -16.22525 -15.69831 -15.23306 -14.91284 -14.59268 -14.51613 -14.08496 -13.99211 -13.73364 -13.33066 -13.28789 -12.91551 -12.81570 -12.72634 -12.56561 -12.46544 -12.27078 -11.84095 -11.69799 -11.54397 -11.39718 -11.27660 -11.16266 -11.09003 -10.67994 -9.55972 -9.18737 -8.71287 -8.14757 -6.26084 0.74597 0.81772 1.34298 1.37723 1.48436 2.37350 3.01439 3.27494 3.56057 3.83100 4.00756 4.02883 4.29710 4.33510 4.46780 4.51670 4.58578 4.61822 4.64339 4.70140 4.80156 4.87259 4.93714 4.96563 5.01167 5.19110 5.20991 5.22093 5.26943 5.32537 5.38598 5.45701 5.47690 5.59651 5.65191 5.72634 5.82083 5.87128 6.06345 6.15153 6.43549 6.51347 6.88006 6.98628 7.41066 8.87787 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.011119 C = 0.006891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.968160 B = 2517.659091 C = 4062.003020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.107 4.107 3 H 0.055 0.945 4 C -0.118 4.118 5 C 0.070 3.930 6 N -0.529 5.529 7 C 0.215 3.785 8 H 0.043 0.957 9 C -0.502 4.502 10 H 0.043 0.957 11 C 0.026 3.974 12 N -0.918 5.918 13 Si 0.947 3.053 14 H -0.270 1.270 15 H -0.278 1.278 16 H -0.282 1.282 17 C -0.035 4.035 18 C -0.147 4.147 19 C -0.126 4.126 20 C -0.146 4.146 21 C -0.126 4.126 22 C -0.125 4.125 23 C 0.074 3.926 24 H 0.076 0.924 25 C -0.166 4.166 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.017 0.983 32 H 0.054 0.946 33 H 0.263 0.737 34 H 0.090 0.910 35 H 0.133 0.867 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.114 0.886 39 H 0.033 0.967 40 H 0.064 0.936 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.690 -2.539 2.812 10.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.126 4.126 3 H 0.074 0.926 4 C -0.156 4.156 5 C -0.058 4.058 6 N -0.253 5.253 7 C 0.109 3.891 8 H 0.061 0.939 9 C -0.541 4.541 10 H 0.061 0.939 11 C -0.174 4.174 12 N -0.557 5.557 13 Si 0.773 3.227 14 H -0.194 1.194 15 H -0.203 1.203 16 H -0.208 1.208 17 C -0.036 4.036 18 C -0.166 4.166 19 C -0.144 4.144 20 C -0.164 4.164 21 C -0.143 4.143 22 C -0.143 4.143 23 C -0.034 4.034 24 H 0.094 0.906 25 C -0.223 4.223 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.151 0.849 36 H 0.162 0.838 37 H 0.157 0.843 38 H 0.132 0.868 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.646 -2.914 2.917 10.490 hybrid contribution 1.671 0.954 -0.636 2.027 sum -7.975 -1.960 2.281 8.523 Atomic orbital electron populations 1.21653 0.92415 1.02342 1.02106 1.22403 0.97485 0.98059 0.94673 0.92643 1.22779 0.95705 0.99872 0.97232 1.22500 0.95740 0.98270 0.89271 1.63845 1.04460 1.54495 1.02521 1.18699 0.87326 0.95682 0.87432 0.93927 1.21150 1.00915 0.94806 1.37241 0.93900 1.25601 1.01031 0.95072 0.95713 1.69980 1.35292 1.02600 1.47865 0.85677 0.80160 0.78795 0.78111 1.19437 1.20320 1.20781 1.20351 0.93168 0.94741 0.95313 1.20977 1.01928 1.00167 0.93551 1.21249 1.00099 0.96543 0.96545 1.21251 1.00400 0.95408 0.99346 1.21394 1.00222 1.00317 0.92405 1.21049 1.00280 0.95307 0.97657 1.22438 0.93573 0.93200 0.94185 0.90596 1.22410 1.00456 0.99664 0.99799 0.92287 0.91592 0.91938 0.89935 0.90846 0.96404 0.92709 0.92792 0.89125 0.84934 0.83758 0.84330 0.86757 0.94805 0.91756 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.14 71.98 0.66 -2.38 16 2 C -0.11 -3.40 3.06 -9.61 -0.03 -3.43 16 3 H 0.06 1.93 7.85 -2.39 -0.02 1.91 16 4 C -0.12 -3.83 6.53 31.98 0.21 -3.62 16 5 C 0.07 3.00 5.57 86.77 0.48 3.49 16 6 N -0.53 -23.03 4.07 -844.24 -3.43 -26.47 16 7 C 0.22 10.64 1.50 43.42 0.07 10.70 16 8 H 0.04 2.37 4.21 -2.39 -0.01 2.36 16 9 C -0.50 -27.51 6.83 25.60 0.17 -27.33 16 10 H 0.04 2.43 7.82 -2.91 -0.02 2.41 16 11 C 0.03 1.42 5.44 84.65 0.46 1.88 16 12 N -0.92 -52.46 12.61 21.45 0.27 -52.19 16 13 Si 0.95 44.09 29.54 68.60 2.03 46.11 16 14 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 17 C -0.03 -1.57 2.81 -19.86 -0.06 -1.62 16 18 C -0.15 -6.37 8.47 22.27 0.19 -6.18 16 19 C -0.13 -4.42 10.05 22.27 0.22 -4.20 16 20 C -0.15 -4.54 10.05 22.27 0.22 -4.31 16 21 C -0.13 -4.16 10.05 22.27 0.22 -3.93 16 22 C -0.12 -5.04 9.30 22.27 0.21 -4.83 16 23 C 0.07 2.75 3.40 45.26 0.15 2.91 16 24 H 0.08 2.67 7.82 -2.39 -0.02 2.65 16 25 C -0.17 -6.39 7.73 71.98 0.56 -5.84 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 1.40 8.11 -2.38 -0.02 1.38 16 29 H 0.08 2.39 8.03 -2.39 -0.02 2.37 16 30 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.02 0.89 7.41 -2.39 -0.02 0.87 16 32 H 0.05 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.26 14.33 8.32 -92.71 -0.77 13.56 16 34 H 0.09 4.25 8.06 -2.91 -0.02 4.22 16 35 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 36 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 37 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 38 H 0.11 4.72 7.55 -2.91 -0.02 4.70 16 39 H 0.03 1.50 6.35 -2.39 -0.02 1.49 16 40 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.06 2.49 4.42 -2.39 -0.01 2.48 16 Total: -1.00 -60.25 318.29 3.59 -56.66 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.98 Total: 24.58 kcal Atomic # 6 Polarization: -52.44 SS G_CDS: 3.74 Total: -48.70 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -3.16 Total: -78.65 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -60.25 3.59 -56.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380731272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.233 kcal (2) G-P(sol) polarization free energy of solvation -60.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds