Wall clock time and date at job start Mon Mar 30 2020 06:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99730 * 2 1 4 4 C 1.52996 * 109.47276 * 66.04693 * 3 2 1 5 5 C 1.52991 * 109.47271 * 179.97438 * 4 3 2 6 6 C 1.53000 * 117.49960 * 243.62160 * 5 4 3 7 7 C 1.52999 * 60.00258 * 252.50805 * 6 5 4 8 8 C 1.46901 * 110.99706 * 236.04772 * 2 1 3 9 9 H 1.08991 * 109.47268 * 65.82693 * 8 2 1 10 10 C 1.50698 * 109.47324 * 305.82261 * 8 2 1 11 11 H 1.08000 * 119.99897 * 327.58577 * 10 8 2 12 12 C 1.37870 * 120.00154 * 147.58129 * 10 8 2 13 13 N 1.31518 * 119.99839 * 7.18837 * 12 10 8 14 14 Si 1.86800 * 120.00343 * 187.18313 * 12 10 8 15 15 H 1.48499 * 109.47057 * 180.02562 * 14 12 10 16 16 H 1.48497 * 109.46882 * 300.00034 * 14 12 10 17 17 H 1.48495 * 109.47003 * 60.00242 * 14 12 10 18 18 C 1.50699 * 109.46519 * 185.82772 * 8 2 1 19 19 C 1.38228 * 120.00470 * 45.75816 * 18 8 2 20 20 C 1.38241 * 120.00029 * 179.78561 * 19 18 8 21 21 C 1.38229 * 120.00037 * 0.44625 * 20 19 18 22 22 C 1.38233 * 120.00066 * 359.80847 * 21 20 19 23 23 C 1.38233 * 119.99951 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.47299 * 183.92658 * 1 2 3 25 25 H 1.09002 * 109.47390 * 303.92294 * 1 2 3 26 26 H 1.08998 * 109.47677 * 63.92791 * 1 2 3 27 27 H 1.09001 * 109.46870 * 186.04701 * 3 2 1 28 28 H 1.08998 * 109.46761 * 306.04551 * 3 2 1 29 29 H 1.09004 * 109.46897 * 300.00255 * 4 3 2 30 30 H 1.09001 * 109.47071 * 59.99761 * 4 3 2 31 31 H 1.09000 * 115.55492 * 29.32902 * 5 4 3 32 32 H 1.09001 * 117.50136 * 359.97438 * 6 5 4 33 33 H 1.09000 * 117.49973 * 145.01946 * 6 5 4 34 34 H 1.08994 * 117.50187 * 252.51069 * 7 6 5 35 35 H 1.09003 * 117.49689 * 107.48778 * 7 6 5 36 36 H 0.97005 * 120.00120 * 355.48305 * 13 12 10 37 37 H 1.07999 * 119.99822 * 0.02562 * 19 18 8 38 38 H 1.08001 * 119.99922 * 180.27229 * 20 19 18 39 39 H 1.08006 * 120.00320 * 179.83091 * 21 20 19 40 40 H 1.08002 * 120.00302 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.00073 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1802 3.4856 1.3185 6 6 3.2420 3.8342 2.3634 7 6 1.8201 4.3806 2.5060 8 6 1.9954 -0.7660 -1.1376 9 1 1.7327 -0.2620 -2.0677 10 6 1.3991 -2.1499 -1.1304 11 1 1.1543 -2.6276 -0.1932 12 6 1.1658 -2.8063 -2.3202 13 7 1.5913 -2.2879 -3.4516 14 14 0.2455 -4.4319 -2.3255 15 1 0.1270 -4.9290 -3.7198 16 1 0.9889 -5.4241 -1.5082 17 1 -1.1103 -4.2349 -1.7527 18 6 3.4950 -0.8646 -1.0258 19 6 4.0779 -1.1924 0.1839 20 6 5.4533 -1.2872 0.2853 21 6 6.2462 -1.0452 -0.8208 22 6 5.6635 -0.7122 -2.0293 23 6 4.2880 -0.6218 -2.1318 24 1 -0.3634 -1.0253 0.0704 25 1 -0.3634 0.5735 0.8527 26 1 -0.3634 0.4516 -0.9230 27 1 3.0797 1.3445 -0.1083 28 1 1.5610 1.9273 -0.8309 29 1 0.5471 2.0844 1.4265 30 1 2.0658 1.5016 2.1491 31 1 2.2630 3.9577 0.3395 32 1 3.5494 3.0462 3.0509 33 1 4.0238 4.5356 2.0719 34 1 1.6663 5.4414 2.3084 35 1 1.1922 3.9520 3.2872 36 1 2.0110 -1.4134 -3.4569 37 1 3.4585 -1.3783 1.0489 38 1 5.9085 -1.5476 1.2295 39 1 7.3209 -1.1166 -0.7410 40 1 6.2830 -0.5235 -2.8937 41 1 3.8328 -0.3621 -3.0761 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383731011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:30 Heat of formation + Delta-G solvation = 43.548214 kcal Electronic energy + Delta-G solvation = -19611.501547 eV Core-core repulsion = 16877.598363 eV Total energy + Delta-G solvation = -2733.903184 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.80913 -37.66051 -36.19982 -33.14906 -30.68186 -30.03876 -29.61510 -26.16257 -25.32156 -22.88280 -22.33057 -21.74081 -21.19838 -20.15936 -19.62371 -16.85909 -16.03092 -15.55751 -15.15050 -14.76218 -14.21064 -13.91375 -13.78558 -13.53616 -13.23118 -12.99269 -12.53817 -12.15553 -11.83080 -11.65748 -11.52987 -11.42406 -11.11396 -10.96394 -10.84023 -10.71149 -10.53876 -10.20800 -10.20021 -10.03896 -10.00000 -9.57371 -8.93680 -8.50696 -8.08350 -7.63383 -7.32140 -6.44487 -4.15433 2.24364 2.28986 3.40628 3.41700 3.60296 3.86076 4.43401 4.57478 4.74923 4.98743 5.01152 5.15567 5.28902 5.48107 5.62979 5.63086 5.65039 5.71158 5.80441 5.87542 5.92172 6.07478 6.10774 6.12998 6.19301 6.32722 6.34647 6.41879 6.46441 6.54545 6.61223 6.77344 6.83207 6.97081 7.00790 7.27411 7.34596 7.64042 7.69886 7.92902 8.01607 8.30586 8.51547 8.77473 9.54402 10.91730 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016532 B = 0.007068 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.328604 B = 3960.717456 C = 5142.174310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.534 5.534 3 C 0.056 3.944 4 C -0.083 4.083 5 C -0.147 4.147 6 C -0.180 4.180 7 C -0.185 4.185 8 C 0.229 3.771 9 H 0.013 0.987 10 C -0.576 4.576 11 H 0.061 0.939 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 1.068 2.932 15 H -0.283 1.283 16 H -0.287 1.287 17 H -0.286 1.286 18 C -0.027 4.027 19 C -0.097 4.097 20 C -0.133 4.133 21 C -0.152 4.152 22 C -0.126 4.126 23 C -0.127 4.127 24 H 0.078 0.922 25 H 0.045 0.955 26 H 0.010 0.990 27 H 0.069 0.931 28 H 0.018 0.982 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.270 0.730 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.742 8.422 7.813 11.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.258 5.258 3 C -0.073 4.073 4 C -0.120 4.120 5 C -0.165 4.165 6 C -0.217 4.217 7 C -0.222 4.222 8 C 0.123 3.877 9 H 0.031 0.969 10 C -0.614 4.614 11 H 0.079 0.921 12 C -0.183 4.183 13 N -0.538 5.538 14 Si 0.896 3.104 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.213 1.213 18 C -0.028 4.028 19 C -0.115 4.115 20 C -0.151 4.151 21 C -0.170 4.170 22 C -0.144 4.144 23 C -0.146 4.146 24 H 0.097 0.903 25 H 0.064 0.936 26 H 0.028 0.972 27 H 0.087 0.913 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.371 6.954 7.236 10.312 hybrid contribution 0.419 1.598 0.130 1.657 sum 2.791 8.552 7.366 11.627 Atomic orbital electron populations 1.22136 0.88254 1.02424 0.97727 1.62047 1.07315 1.10516 1.45887 1.22046 1.00245 0.89957 0.95038 1.21180 1.00256 0.91707 0.98888 1.22343 1.03012 0.96892 0.94300 1.23001 0.92092 1.03591 1.03059 1.22934 0.98791 0.99094 1.01379 1.18497 0.87067 0.94550 0.87620 0.96887 1.21745 1.43877 1.00436 0.95347 0.92119 1.25867 0.95882 1.04375 0.92166 1.70822 1.36674 1.17983 1.28304 0.83539 0.76008 0.74792 0.76033 1.20805 1.21316 1.21283 1.20486 0.97183 0.92863 0.92239 1.20896 0.93481 0.99030 0.98139 1.21021 0.94354 1.01902 0.97812 1.20814 0.98552 1.03970 0.93679 1.20920 0.94913 1.01553 0.97026 1.21012 0.93259 1.01770 0.98551 0.90313 0.93597 0.97192 0.91266 0.96342 0.91877 0.91358 0.88216 0.88798 0.89276 0.89282 0.88992 0.91814 0.86257 0.87523 0.87655 0.87513 0.87203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.85 9.03 60.06 0.54 1.39 16 2 N -0.53 -11.15 4.10 -237.69 -0.98 -12.12 16 3 C 0.06 1.01 4.71 -3.82 -0.02 0.99 16 4 C -0.08 -1.24 5.43 -26.74 -0.15 -1.38 16 5 C -0.15 -1.90 5.74 -90.62 -0.52 -2.42 16 6 C -0.18 -2.09 10.18 -26.73 -0.27 -2.36 16 7 C -0.18 -2.03 10.25 -26.73 -0.27 -2.31 16 8 C 0.23 5.52 1.45 -70.02 -0.10 5.42 16 9 H 0.01 0.36 6.42 -51.93 -0.33 0.02 16 10 C -0.58 -15.30 6.80 -34.44 -0.23 -15.54 16 11 H 0.06 1.64 7.67 -52.49 -0.40 1.24 16 12 C 0.02 0.63 5.45 -17.82 -0.10 0.53 16 13 N -0.90 -26.12 13.62 55.43 0.76 -25.37 16 14 Si 1.07 24.54 29.91 -169.99 -5.08 19.46 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 18 C -0.03 -0.60 3.47 -104.62 -0.36 -0.97 16 19 C -0.10 -2.05 8.97 -39.58 -0.35 -2.40 16 20 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16 21 C -0.15 -2.72 10.05 -39.59 -0.40 -3.12 16 22 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 23 C -0.13 -2.79 9.34 -39.58 -0.37 -3.16 16 24 H 0.08 1.67 6.83 -51.93 -0.35 1.32 16 25 H 0.05 0.77 6.30 -51.93 -0.33 0.44 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.07 1.33 6.65 -51.93 -0.35 0.98 16 28 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 29 H 0.06 0.93 6.47 -51.93 -0.34 0.59 16 30 H 0.07 1.05 7.87 -51.93 -0.41 0.64 16 31 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 32 H 0.09 1.09 8.03 -51.93 -0.42 0.67 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.27 7.74 5.43 -40.82 -0.22 7.52 16 37 H 0.12 2.53 7.90 -52.49 -0.41 2.12 16 38 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 40 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 41 H 0.11 2.46 7.14 -52.49 -0.37 2.09 16 LS Contribution 329.56 15.07 4.97 4.97 Total: -1.00 -28.33 329.56 -10.27 -38.60 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.53 Total: 5.46 kcal Atomic # 6 Polarization: -27.60 SS G_CDS: -3.40 Total: -31.00 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.22 Total: -37.49 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.08 Total: 19.46 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.33 -10.27 -38.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383731011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.151 kcal (2) G-P(sol) polarization free energy of solvation -28.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds