Wall clock time and date at job start Mon Mar 30 2020 06:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 110.99730 * 2 1 4 4 C 1.52996 * 109.47276 * 66.04693 * 3 2 1 5 5 C 1.52991 * 109.47271 * 179.97438 * 4 3 2 6 6 C 1.53000 * 117.49960 * 243.62160 * 5 4 3 7 7 C 1.52999 * 60.00258 * 252.50805 * 6 5 4 8 8 C 1.46901 * 110.99706 * 236.04772 * 2 1 3 9 9 H 1.08991 * 109.47268 * 65.82693 * 8 2 1 10 10 C 1.50698 * 109.47324 * 305.82261 * 8 2 1 11 11 H 1.08000 * 119.99897 * 327.58577 * 10 8 2 12 12 C 1.37870 * 120.00154 * 147.58129 * 10 8 2 13 13 N 1.31518 * 119.99839 * 7.18837 * 12 10 8 14 14 Si 1.86800 * 120.00343 * 187.18313 * 12 10 8 15 15 H 1.48499 * 109.47057 * 180.02562 * 14 12 10 16 16 H 1.48497 * 109.46882 * 300.00034 * 14 12 10 17 17 H 1.48495 * 109.47003 * 60.00242 * 14 12 10 18 18 C 1.50699 * 109.46519 * 185.82772 * 8 2 1 19 19 C 1.38228 * 120.00470 * 45.75816 * 18 8 2 20 20 C 1.38241 * 120.00029 * 179.78561 * 19 18 8 21 21 C 1.38229 * 120.00037 * 0.44625 * 20 19 18 22 22 C 1.38233 * 120.00066 * 359.80847 * 21 20 19 23 23 C 1.38233 * 119.99951 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.47299 * 183.92658 * 1 2 3 25 25 H 1.09002 * 109.47390 * 303.92294 * 1 2 3 26 26 H 1.08998 * 109.47677 * 63.92791 * 1 2 3 27 27 H 1.09001 * 109.46870 * 186.04701 * 3 2 1 28 28 H 1.08998 * 109.46761 * 306.04551 * 3 2 1 29 29 H 1.09004 * 109.46897 * 300.00255 * 4 3 2 30 30 H 1.09001 * 109.47071 * 59.99761 * 4 3 2 31 31 H 1.09000 * 115.55492 * 29.32902 * 5 4 3 32 32 H 1.09001 * 117.50136 * 359.97438 * 6 5 4 33 33 H 1.09000 * 117.49973 * 145.01946 * 6 5 4 34 34 H 1.08994 * 117.50187 * 252.51069 * 7 6 5 35 35 H 1.09003 * 117.49689 * 107.48778 * 7 6 5 36 36 H 0.97005 * 120.00120 * 355.48305 * 13 12 10 37 37 H 1.07999 * 119.99822 * 0.02562 * 19 18 8 38 38 H 1.08001 * 119.99922 * 180.27229 * 20 19 18 39 39 H 1.08006 * 120.00320 * 179.83091 * 21 20 19 40 40 H 1.08002 * 120.00302 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.00073 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1802 3.4856 1.3185 6 6 3.2420 3.8342 2.3634 7 6 1.8201 4.3806 2.5060 8 6 1.9954 -0.7660 -1.1376 9 1 1.7327 -0.2620 -2.0677 10 6 1.3991 -2.1499 -1.1304 11 1 1.1543 -2.6276 -0.1932 12 6 1.1658 -2.8063 -2.3202 13 7 1.5913 -2.2879 -3.4516 14 14 0.2455 -4.4319 -2.3255 15 1 0.1270 -4.9290 -3.7198 16 1 0.9889 -5.4241 -1.5082 17 1 -1.1103 -4.2349 -1.7527 18 6 3.4950 -0.8646 -1.0258 19 6 4.0779 -1.1924 0.1839 20 6 5.4533 -1.2872 0.2853 21 6 6.2462 -1.0452 -0.8208 22 6 5.6635 -0.7122 -2.0293 23 6 4.2880 -0.6218 -2.1318 24 1 -0.3634 -1.0253 0.0704 25 1 -0.3634 0.5735 0.8527 26 1 -0.3634 0.4516 -0.9230 27 1 3.0797 1.3445 -0.1083 28 1 1.5610 1.9273 -0.8309 29 1 0.5471 2.0844 1.4265 30 1 2.0658 1.5016 2.1491 31 1 2.2630 3.9577 0.3395 32 1 3.5494 3.0462 3.0509 33 1 4.0238 4.5356 2.0719 34 1 1.6663 5.4414 2.3084 35 1 1.1922 3.9520 3.2872 36 1 2.0110 -1.4134 -3.4569 37 1 3.4585 -1.3783 1.0489 38 1 5.9085 -1.5476 1.2295 39 1 7.3209 -1.1166 -0.7410 40 1 6.2830 -0.5235 -2.8937 41 1 3.8328 -0.3621 -3.0761 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383731011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:30 Heat of formation + Delta-G solvation = 29.733202 kcal Electronic energy + Delta-G solvation = -19612.100611 eV Core-core repulsion = 16877.598363 eV Total energy + Delta-G solvation = -2734.502248 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.43652 -38.86029 -37.66523 -35.04947 -32.35929 -31.61461 -31.06605 -27.95560 -27.02283 -24.63867 -23.32635 -23.19993 -22.70887 -21.36170 -21.27242 -18.81325 -17.58829 -16.97284 -16.51287 -16.25223 -15.69775 -15.59099 -15.41283 -15.05515 -14.66571 -14.58929 -14.09771 -13.86357 -13.43332 -13.27882 -12.88519 -12.78671 -12.61364 -12.42996 -12.38377 -12.12307 -12.06842 -11.96093 -11.71860 -11.67079 -11.17133 -10.86461 -10.66085 -10.52865 -9.66717 -9.32501 -9.09661 -8.58555 -6.31132 0.64907 0.71210 1.52344 1.59565 1.78249 2.54403 2.89703 3.00586 3.23537 3.29872 3.86985 4.01882 4.02953 4.14915 4.23169 4.25378 4.28067 4.37326 4.41852 4.57492 4.61743 4.68612 4.75398 4.79340 4.86015 4.87014 5.00844 5.04512 5.06345 5.15396 5.19232 5.28492 5.30466 5.35378 5.42435 5.70781 5.73516 5.86497 5.96902 6.05710 6.31017 6.46176 6.50510 6.72159 7.46799 8.76202 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016532 B = 0.007068 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.328604 B = 3960.717456 C = 5142.174310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.534 5.534 3 C 0.063 3.937 4 C -0.069 4.069 5 C -0.168 4.168 6 C -0.178 4.178 7 C -0.168 4.168 8 C 0.235 3.765 9 H -0.027 1.027 10 C -0.577 4.577 11 H 0.052 0.948 12 C -0.026 4.026 13 N -0.932 5.932 14 Si 1.111 2.889 15 H -0.287 1.287 16 H -0.274 1.274 17 H -0.268 1.268 18 C -0.050 4.050 19 C -0.111 4.111 20 C -0.126 4.126 21 C -0.141 4.141 22 C -0.126 4.126 23 C -0.152 4.152 24 H 0.061 0.939 25 H 0.080 0.920 26 H -0.005 1.005 27 H 0.057 0.943 28 H 0.006 0.994 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.259 0.741 37 H 0.112 0.888 38 H 0.143 0.857 39 H 0.149 0.851 40 H 0.134 0.866 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.165 8.743 9.945 13.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.258 5.258 3 C -0.065 4.065 4 C -0.107 4.107 5 C -0.186 4.186 6 C -0.215 4.215 7 C -0.205 4.205 8 C 0.128 3.872 9 H -0.010 1.010 10 C -0.616 4.616 11 H 0.070 0.930 12 C -0.225 4.225 13 N -0.570 5.570 14 Si 0.933 3.067 15 H -0.213 1.213 16 H -0.200 1.200 17 H -0.193 1.193 18 C -0.051 4.051 19 C -0.129 4.129 20 C -0.143 4.143 21 C -0.159 4.159 22 C -0.144 4.144 23 C -0.171 4.171 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.014 0.986 27 H 0.075 0.925 28 H 0.025 0.975 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.070 0.930 37 H 0.130 0.870 38 H 0.161 0.839 39 H 0.166 0.834 40 H 0.151 0.849 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.795 7.298 9.396 12.488 hybrid contribution 0.060 1.583 -0.488 1.657 sum 3.855 8.881 8.908 13.156 Atomic orbital electron populations 1.22135 0.87763 1.01790 0.98492 1.62047 1.07799 1.11957 1.43982 1.22032 0.99243 0.88516 0.96751 1.21028 1.00519 0.92745 0.96372 1.22232 1.05248 0.96012 0.95139 1.23084 0.92670 1.03760 1.01975 1.23024 0.98227 0.99525 0.99685 1.18283 0.88602 0.93474 0.86844 1.00984 1.21929 1.43513 1.01375 0.94744 0.92986 1.27147 0.96241 1.07195 0.91957 1.70914 1.38773 1.18064 1.29200 0.83003 0.76005 0.71696 0.75974 1.21290 1.19990 1.19306 1.20362 0.96230 0.94936 0.93560 1.20917 0.95016 0.99956 0.97042 1.21414 0.93102 1.00116 0.99701 1.21292 1.00686 1.01492 0.92418 1.21252 0.93709 1.00537 0.98921 1.21028 0.94955 1.03547 0.97567 0.92041 0.90152 0.98601 0.92464 0.97527 0.91518 0.91505 0.88681 0.88788 0.88178 0.87693 0.88300 0.93042 0.86966 0.83900 0.83365 0.84860 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.88 9.03 127.69 1.15 3.03 16 2 N -0.53 -23.06 4.10 -905.93 -3.72 -26.78 16 3 C 0.06 2.35 4.71 86.30 0.41 2.75 16 4 C -0.07 -2.02 5.43 30.59 0.17 -1.85 16 5 C -0.17 -4.12 5.74 -10.80 -0.06 -4.18 16 6 C -0.18 -3.73 10.18 30.59 0.31 -3.42 16 7 C -0.17 -3.24 10.25 30.60 0.31 -2.93 16 8 C 0.24 11.94 1.45 43.42 0.06 12.00 16 9 H -0.03 -1.58 6.42 -2.39 -0.02 -1.60 16 10 C -0.58 -31.84 6.80 25.60 0.17 -31.66 16 11 H 0.05 2.89 7.67 -2.91 -0.02 2.87 16 12 C -0.03 -1.47 5.45 84.65 0.46 -1.01 16 13 N -0.93 -56.51 13.62 21.45 0.29 -56.22 16 14 Si 1.11 50.27 29.91 68.60 2.05 52.32 16 15 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 16 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 17 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 18 C -0.05 -2.34 3.47 -19.87 -0.07 -2.41 16 19 C -0.11 -4.64 8.97 22.27 0.20 -4.44 16 20 C -0.13 -4.30 10.05 22.27 0.22 -4.07 16 21 C -0.14 -4.56 10.05 22.27 0.22 -4.33 16 22 C -0.13 -4.65 10.05 22.27 0.22 -4.43 16 23 C -0.15 -6.89 9.34 22.27 0.21 -6.68 16 24 H 0.06 2.68 6.83 -2.39 -0.02 2.67 16 25 H 0.08 2.66 6.30 -2.39 -0.02 2.65 16 26 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 27 H 0.06 2.27 6.65 -2.39 -0.02 2.25 16 28 H 0.01 0.26 8.12 -2.39 -0.02 0.24 16 29 H 0.07 1.88 6.47 -2.38 -0.02 1.86 16 30 H 0.07 1.97 7.87 -2.39 -0.02 1.96 16 31 H 0.09 2.42 8.07 -2.39 -0.02 2.40 16 32 H 0.09 1.97 8.03 -2.39 -0.02 1.95 16 33 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.26 15.87 5.43 -92.70 -0.50 15.37 16 37 H 0.11 4.76 7.90 -2.91 -0.02 4.74 16 38 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 39 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 40 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 41 H 0.09 4.25 7.14 -2.91 -0.02 4.23 16 Total: -1.00 -63.98 329.56 3.87 -60.11 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 1.25 Total: 24.20 kcal Atomic # 6 Polarization: -57.62 SS G_CDS: 4.00 Total: -53.62 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -3.42 Total: -83.00 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.05 Total: 52.32 kcal Total: -63.98 3.87 -60.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383731011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.845 kcal (2) G-P(sol) polarization free energy of solvation -63.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds