Wall clock time and date at job start Mon Mar 30 2020 06:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 112.84514 * 2 1 4 4 C 1.53783 * 113.69334 * 228.73209 * 2 1 3 5 5 C 1.53778 * 87.08019 * 220.00701 * 4 2 1 6 6 H 1.09003 * 113.69269 * 270.87147 * 5 4 2 7 7 N 1.46906 * 113.61336 * 139.98007 * 5 4 2 8 8 C 1.46896 * 110.99687 * 107.49944 * 7 5 4 9 9 H 1.08997 * 109.47496 * 325.00093 * 8 7 5 10 10 C 1.50703 * 109.46831 * 85.00720 * 8 7 5 11 11 H 1.08009 * 119.99532 * 234.79406 * 10 8 7 12 12 C 1.37873 * 120.00407 * 54.78869 * 10 8 7 13 13 N 1.31512 * 120.00170 * 2.53024 * 12 10 8 14 14 Si 1.86800 * 119.99707 * 182.52454 * 12 10 8 15 15 H 1.48496 * 109.47473 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47075 * 120.00460 * 14 12 10 17 17 H 1.48502 * 109.47228 * 239.99981 * 14 12 10 18 18 C 1.50709 * 109.46958 * 204.99738 * 8 7 5 19 19 C 1.38235 * 120.00065 * 330.50906 * 18 8 7 20 20 C 1.38227 * 120.00016 * 179.97438 * 19 18 8 21 21 C 1.38234 * 120.00105 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00131 * 0.06864 * 21 20 19 23 23 C 1.38233 * 119.99710 * 150.48416 * 18 8 7 24 24 C 1.53775 * 87.08349 * 25.43282 * 5 4 2 25 25 H 1.08997 * 113.62034 * 89.19689 * 24 5 4 26 26 C 1.53006 * 113.61525 * 220.02054 * 24 5 4 27 27 H 1.08997 * 109.47189 * 288.80219 * 1 2 3 28 28 H 1.08995 * 109.47250 * 48.80563 * 1 2 3 29 29 H 1.09000 * 109.47224 * 168.80651 * 1 2 3 30 30 H 1.08993 * 113.61122 * 105.45349 * 4 2 1 31 31 H 1.09002 * 113.60829 * 334.55889 * 4 2 1 32 32 H 1.00897 * 110.99711 * 231.45890 * 7 5 4 33 33 H 0.96999 * 120.00212 * 180.02562 * 13 12 10 34 34 H 1.08007 * 119.99912 * 359.97438 * 19 18 8 35 35 H 1.08000 * 119.99941 * 179.72327 * 20 19 18 36 36 H 1.08005 * 119.99985 * 179.97438 * 21 20 19 37 37 H 1.07994 * 120.00587 * 179.97438 * 22 21 20 38 38 H 1.07995 * 120.00367 * 359.97438 * 23 18 8 39 39 H 1.08999 * 109.47245 * 60.00032 * 26 24 5 40 40 H 1.08996 * 109.47281 * 179.97438 * 26 24 5 41 41 H 1.09002 * 109.46637 * 299.99801 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9532 1.0045 0.0000 4 6 2.1480 -0.9288 -1.0585 5 6 3.1937 -1.3118 0.0020 6 1 4.0725 -0.6669 0.0035 7 7 3.5348 -2.7407 0.0028 8 6 4.8785 -2.9614 -0.5482 9 1 5.0666 -2.2429 -1.3459 10 6 5.9039 -2.7823 0.5415 11 1 6.7168 -2.0836 0.4085 12 6 5.8045 -3.5102 1.7082 13 7 4.8436 -4.3969 1.8502 14 14 7.0347 -3.2371 3.0871 15 1 8.0092 -2.1926 2.6815 16 1 6.3173 -2.7958 4.3103 17 1 7.7551 -4.5053 3.3663 18 6 4.9714 -4.3607 -1.1002 19 6 4.2091 -5.3734 -0.5486 20 6 4.2940 -6.6567 -1.0552 21 6 5.1407 -6.9272 -2.1139 22 6 5.9037 -5.9148 -2.6649 23 6 5.8186 -4.6313 -2.1585 24 6 2.1461 -0.9280 1.0602 25 1 1.4960 -1.7534 1.3507 26 6 2.7323 -0.1826 2.2610 27 1 -0.3633 0.3312 0.9728 28 1 -0.3633 0.6768 -0.7733 29 1 -0.3634 -1.0081 -0.1995 30 1 2.5671 -0.3985 -1.9134 31 1 1.4975 -1.7540 -1.3483 32 1 3.4555 -3.1308 0.9300 33 1 4.7734 -4.9087 2.6712 34 1 3.5472 -5.1619 0.2782 35 1 3.7018 -7.4488 -0.6214 36 1 5.2073 -7.9300 -2.5094 37 1 6.5656 -6.1262 -3.4917 38 1 6.4136 -3.8400 -2.5899 39 1 3.2043 0.7393 1.9212 40 1 1.9353 0.0558 2.9651 41 1 3.4751 -0.8117 2.7517 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385668496.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:51 Heat of formation + Delta-G solvation = 34.172057 kcal Electronic energy + Delta-G solvation = -19883.875781 eV Core-core repulsion = 17149.566016 eV Total energy + Delta-G solvation = -2734.309765 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.01736 -37.98300 -34.74073 -31.57063 -30.22898 -29.71560 -29.45628 -27.82813 -26.04617 -22.96208 -22.15382 -21.51089 -20.62127 -19.71073 -18.76491 -16.47888 -15.80615 -15.12145 -14.45545 -14.23716 -14.02361 -13.72477 -13.45771 -12.97312 -12.85498 -12.58330 -12.25736 -12.21490 -11.92325 -11.68496 -11.55331 -11.38357 -11.05321 -11.03321 -10.77248 -10.58270 -10.31119 -10.19544 -10.02197 -9.71278 -9.51393 -9.40121 -9.25458 -8.66562 -7.74731 -7.37769 -6.99959 -6.03350 -4.30537 2.57966 2.69492 3.18718 3.28471 3.31604 4.29156 5.01494 5.02069 5.14173 5.18640 5.22530 5.57581 5.76885 5.84516 5.88416 5.90588 5.95776 6.01743 6.05583 6.11466 6.18651 6.27408 6.34286 6.46038 6.49121 6.52505 6.57082 6.67658 6.79122 6.84432 6.96450 7.09985 7.13456 7.23687 7.36522 7.59305 7.67699 7.84697 8.02802 8.12064 8.31080 8.47812 8.88049 9.14920 9.42503 10.80977 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015203 B = 0.008393 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.312457 B = 3335.373154 C = 4584.536498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.115 4.115 3 H 0.080 0.920 4 C -0.127 4.127 5 C 0.082 3.918 6 H 0.063 0.937 7 N -0.676 5.676 8 C 0.237 3.763 9 H 0.034 0.966 10 C -0.536 4.536 11 H 0.056 0.944 12 C 0.073 3.927 13 N -0.877 5.877 14 Si 0.890 3.110 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.017 4.017 19 C -0.051 4.051 20 C -0.149 4.149 21 C -0.154 4.154 22 C -0.144 4.144 23 C -0.136 4.136 24 C -0.110 4.110 25 H 0.088 0.912 26 C -0.139 4.139 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.366 0.634 33 H 0.265 0.735 34 H 0.144 0.856 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.048 0.952 40 H 0.044 0.956 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.253 3.621 -2.492 6.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 H 0.098 0.902 4 C -0.165 4.165 5 C -0.030 4.030 6 H 0.081 0.919 7 N -0.312 5.312 8 C 0.128 3.872 9 H 0.052 0.948 10 C -0.576 4.576 11 H 0.075 0.925 12 C -0.130 4.130 13 N -0.516 5.516 14 Si 0.717 3.283 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.018 4.018 19 C -0.070 4.070 20 C -0.167 4.167 21 C -0.172 4.172 22 C -0.163 4.163 23 C -0.154 4.154 24 C -0.129 4.129 25 H 0.106 0.894 26 C -0.197 4.197 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.193 0.807 33 H 0.076 0.924 34 H 0.162 0.838 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.634 3.348 -2.912 7.172 hybrid contribution 1.533 0.244 1.584 2.217 sum -4.102 3.592 -1.328 5.611 Atomic orbital electron populations 1.21675 0.95596 1.01440 1.00648 1.22485 0.94739 0.97974 0.98210 0.90199 1.23159 0.98954 0.98136 0.96294 1.22729 0.94435 0.92030 0.93802 0.91892 1.61003 1.28182 1.10221 1.31839 1.18140 0.86905 0.88998 0.93144 0.94801 1.21751 1.12228 1.23354 1.00218 0.92539 1.24961 0.95630 0.93961 0.98438 1.69608 1.32002 1.23417 1.26542 0.86569 0.81501 0.78198 0.81998 1.19866 1.20857 1.20879 1.20204 0.92417 0.97950 0.91278 1.21318 0.98071 0.90679 0.96889 1.21084 1.00368 0.97481 0.97754 1.20748 0.99736 0.97748 0.98976 1.20735 1.00958 0.93732 1.00835 1.20838 1.00346 0.95944 0.98312 1.22835 0.98363 0.97863 0.93876 0.89401 1.21696 1.00218 0.99920 0.97829 0.93251 0.93404 0.92657 0.93030 0.89996 0.80722 0.92411 0.83843 0.88217 0.88431 0.88239 0.87990 0.93277 0.93737 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.71 37.16 0.36 -1.35 16 2 C -0.12 -1.68 3.91 -89.81 -0.35 -2.03 16 3 H 0.08 1.11 7.96 -51.93 -0.41 0.70 16 4 C -0.13 -2.11 7.44 -25.92 -0.19 -2.30 16 5 C 0.08 1.57 3.43 -66.90 -0.23 1.34 16 6 H 0.06 1.31 7.76 -51.93 -0.40 0.90 16 7 N -0.68 -14.95 5.45 -101.32 -0.55 -15.50 16 8 C 0.24 5.65 2.36 -70.01 -0.17 5.49 16 9 H 0.03 0.81 7.79 -51.93 -0.40 0.40 16 10 C -0.54 -13.79 8.69 -34.44 -0.30 -14.09 16 11 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 12 C 0.07 1.85 5.05 -17.82 -0.09 1.76 16 13 N -0.88 -22.12 7.97 55.43 0.44 -21.68 16 14 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 15 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 18 C -0.02 -0.41 4.79 -104.62 -0.50 -0.91 16 19 C -0.05 -1.19 7.66 -39.59 -0.30 -1.49 16 20 C -0.15 -3.12 10.05 -39.59 -0.40 -3.52 16 21 C -0.15 -3.03 10.05 -39.58 -0.40 -3.42 16 22 C -0.14 -2.87 10.05 -39.58 -0.40 -3.27 16 23 C -0.14 -2.97 9.70 -39.58 -0.38 -3.36 16 24 C -0.11 -1.85 3.49 -89.81 -0.31 -2.16 16 25 H 0.09 1.54 8.10 -51.93 -0.42 1.12 16 26 C -0.14 -2.23 9.71 37.16 0.36 -1.87 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.71 7.95 -51.93 -0.41 0.30 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.41 7.97 -51.93 -0.41 0.99 16 32 H 0.37 8.68 5.34 -39.29 -0.21 8.47 16 33 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 34 H 0.14 3.50 5.59 -52.48 -0.29 3.20 16 35 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 36 H 0.10 1.64 8.06 -52.48 -0.42 1.21 16 37 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 39 H 0.05 0.74 7.94 -51.93 -0.41 0.33 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 325.84 15.07 4.91 4.91 Total: -1.00 -25.22 325.84 -10.26 -35.48 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -6.73 Total: 12.64 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: -3.30 Total: -31.20 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.11 Total: -37.18 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -25.22 -10.26 -35.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385668496.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.650 kcal (2) G-P(sol) polarization free energy of solvation -25.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds