Wall clock time and date at job start Mon Mar 30 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 112.84514 * 2 1 4 4 C 1.53783 * 113.69334 * 228.73209 * 2 1 3 5 5 C 1.53778 * 87.08019 * 220.00701 * 4 2 1 6 6 H 1.09003 * 113.69269 * 270.87147 * 5 4 2 7 7 N 1.46906 * 113.61336 * 139.98007 * 5 4 2 8 8 C 1.46896 * 110.99687 * 107.49944 * 7 5 4 9 9 H 1.08997 * 109.47496 * 325.00093 * 8 7 5 10 10 C 1.50703 * 109.46831 * 85.00720 * 8 7 5 11 11 H 1.08009 * 119.99532 * 234.79406 * 10 8 7 12 12 C 1.37873 * 120.00407 * 54.78869 * 10 8 7 13 13 N 1.31512 * 120.00170 * 2.53024 * 12 10 8 14 14 Si 1.86800 * 119.99707 * 182.52454 * 12 10 8 15 15 H 1.48496 * 109.47473 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47075 * 120.00460 * 14 12 10 17 17 H 1.48502 * 109.47228 * 239.99981 * 14 12 10 18 18 C 1.50709 * 109.46958 * 204.99738 * 8 7 5 19 19 C 1.38235 * 120.00065 * 330.50906 * 18 8 7 20 20 C 1.38227 * 120.00016 * 179.97438 * 19 18 8 21 21 C 1.38234 * 120.00105 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00131 * 0.06864 * 21 20 19 23 23 C 1.38233 * 119.99710 * 150.48416 * 18 8 7 24 24 C 1.53775 * 87.08349 * 25.43282 * 5 4 2 25 25 H 1.08997 * 113.62034 * 89.19689 * 24 5 4 26 26 C 1.53006 * 113.61525 * 220.02054 * 24 5 4 27 27 H 1.08997 * 109.47189 * 288.80219 * 1 2 3 28 28 H 1.08995 * 109.47250 * 48.80563 * 1 2 3 29 29 H 1.09000 * 109.47224 * 168.80651 * 1 2 3 30 30 H 1.08993 * 113.61122 * 105.45349 * 4 2 1 31 31 H 1.09002 * 113.60829 * 334.55889 * 4 2 1 32 32 H 1.00897 * 110.99711 * 231.45890 * 7 5 4 33 33 H 0.96999 * 120.00212 * 180.02562 * 13 12 10 34 34 H 1.08007 * 119.99912 * 359.97438 * 19 18 8 35 35 H 1.08000 * 119.99941 * 179.72327 * 20 19 18 36 36 H 1.08005 * 119.99985 * 179.97438 * 21 20 19 37 37 H 1.07994 * 120.00587 * 179.97438 * 22 21 20 38 38 H 1.07995 * 120.00367 * 359.97438 * 23 18 8 39 39 H 1.08999 * 109.47245 * 60.00032 * 26 24 5 40 40 H 1.08996 * 109.47281 * 179.97438 * 26 24 5 41 41 H 1.09002 * 109.46637 * 299.99801 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9532 1.0045 0.0000 4 6 2.1480 -0.9288 -1.0585 5 6 3.1937 -1.3118 0.0020 6 1 4.0725 -0.6669 0.0035 7 7 3.5348 -2.7407 0.0028 8 6 4.8785 -2.9614 -0.5482 9 1 5.0666 -2.2429 -1.3459 10 6 5.9039 -2.7823 0.5415 11 1 6.7168 -2.0836 0.4085 12 6 5.8045 -3.5102 1.7082 13 7 4.8436 -4.3969 1.8502 14 14 7.0347 -3.2371 3.0871 15 1 8.0092 -2.1926 2.6815 16 1 6.3173 -2.7958 4.3103 17 1 7.7551 -4.5053 3.3663 18 6 4.9714 -4.3607 -1.1002 19 6 4.2091 -5.3734 -0.5486 20 6 4.2940 -6.6567 -1.0552 21 6 5.1407 -6.9272 -2.1139 22 6 5.9037 -5.9148 -2.6649 23 6 5.8186 -4.6313 -2.1585 24 6 2.1461 -0.9280 1.0602 25 1 1.4960 -1.7534 1.3507 26 6 2.7323 -0.1826 2.2610 27 1 -0.3633 0.3312 0.9728 28 1 -0.3633 0.6768 -0.7733 29 1 -0.3634 -1.0081 -0.1995 30 1 2.5671 -0.3985 -1.9134 31 1 1.4975 -1.7540 -1.3483 32 1 3.4555 -3.1308 0.9300 33 1 4.7734 -4.9087 2.6712 34 1 3.5472 -5.1619 0.2782 35 1 3.7018 -7.4488 -0.6214 36 1 5.2073 -7.9300 -2.5094 37 1 6.5656 -6.1262 -3.4917 38 1 6.4136 -3.8400 -2.5899 39 1 3.2043 0.7393 1.9212 40 1 1.9353 0.0558 2.9651 41 1 3.4751 -0.8117 2.7517 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385668496.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:50 Heat of formation + Delta-G solvation = 23.466148 kcal Electronic energy + Delta-G solvation = -19884.340024 eV Core-core repulsion = 17149.566016 eV Total energy + Delta-G solvation = -2734.774008 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47636 -39.59415 -36.48659 -33.40809 -31.72740 -31.26753 -30.91113 -29.25477 -27.83145 -24.69693 -23.54177 -23.11900 -22.07655 -21.43712 -20.15468 -18.39051 -17.45722 -16.90746 -16.01362 -15.81072 -15.49810 -15.33114 -14.91310 -14.60278 -14.28941 -14.00097 -13.78799 -13.55876 -13.44525 -13.32134 -13.20210 -12.96450 -12.77239 -12.49449 -12.39403 -12.28196 -11.85787 -11.71803 -11.55682 -11.34134 -11.26722 -10.84425 -10.71526 -10.50776 -9.41618 -9.09579 -8.77798 -7.93586 -6.30134 0.89755 1.04238 1.33501 1.38650 1.46068 2.37594 3.09102 3.40725 3.75837 3.79856 3.88382 4.18300 4.28779 4.39948 4.42053 4.61326 4.61682 4.66722 4.71643 4.75448 4.81088 4.95883 5.00822 5.01492 5.07542 5.15714 5.17621 5.24407 5.25317 5.31417 5.37299 5.54050 5.64517 5.68750 5.74194 5.79380 5.93700 6.11232 6.12716 6.41079 6.54250 6.63803 7.04593 7.27760 7.46518 8.84630 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015203 B = 0.008393 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.312457 B = 3335.373154 C = 4584.536498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 H 0.092 0.908 4 C -0.121 4.121 5 C 0.063 3.937 6 H 0.042 0.958 7 N -0.675 5.675 8 C 0.240 3.760 9 H 0.020 0.980 10 C -0.557 4.557 11 H 0.039 0.961 12 C 0.043 3.957 13 N -0.880 5.880 14 Si 0.938 3.062 15 H -0.279 1.279 16 H -0.276 1.276 17 H -0.285 1.285 18 C -0.044 4.044 19 C -0.070 4.070 20 C -0.155 4.155 21 C -0.149 4.149 22 C -0.141 4.141 23 C -0.153 4.153 24 C -0.108 4.108 25 H 0.079 0.921 26 C -0.135 4.135 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.355 0.645 33 H 0.265 0.735 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.106 0.894 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.890 3.321 -2.899 7.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.115 4.115 3 H 0.110 0.890 4 C -0.160 4.160 5 C -0.048 4.048 6 H 0.060 0.940 7 N -0.310 5.310 8 C 0.131 3.869 9 H 0.038 0.962 10 C -0.596 4.596 11 H 0.057 0.943 12 C -0.159 4.159 13 N -0.518 5.518 14 Si 0.765 3.235 15 H -0.204 1.204 16 H -0.202 1.202 17 H -0.211 1.211 18 C -0.045 4.045 19 C -0.088 4.088 20 C -0.174 4.174 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.172 4.172 24 C -0.127 4.127 25 H 0.097 0.903 26 C -0.192 4.192 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.180 0.820 33 H 0.075 0.925 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.285 3.057 -3.330 7.741 hybrid contribution 1.750 0.300 1.656 2.428 sum -4.534 3.357 -1.674 5.885 Atomic orbital electron populations 1.21645 0.93517 1.01731 1.02066 1.22401 0.96340 0.97509 0.95266 0.88955 1.23086 0.97941 0.98517 0.96415 1.22915 0.94732 0.90197 0.96926 0.94047 1.61053 1.27070 1.11983 1.30882 1.18030 0.87304 0.89292 0.92285 0.96227 1.21834 1.12460 1.23664 1.01614 0.94273 1.25413 0.96913 0.93915 0.99673 1.69732 1.32251 1.23216 1.26607 0.85821 0.79835 0.77623 0.80199 1.20367 1.20176 1.21069 1.20304 0.93808 0.97776 0.92658 1.21219 0.98544 0.91908 0.97177 1.21368 1.00838 0.96982 0.98163 1.21169 0.98259 0.99423 0.97873 1.21130 1.00870 0.92704 1.01192 1.21062 1.00377 0.97441 0.98323 1.22797 0.97404 0.98325 0.94194 0.90282 1.21652 1.00226 0.99513 0.97800 0.91991 0.91599 0.93199 0.92535 0.90640 0.82029 0.92462 0.85695 0.86149 0.84696 0.84827 0.87538 0.92403 0.91391 0.95100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.71 71.98 0.70 -2.29 16 2 C -0.10 -2.67 3.91 -10.27 -0.04 -2.71 16 3 H 0.09 2.36 7.96 -2.39 -0.02 2.35 16 4 C -0.12 -4.01 7.44 31.12 0.23 -3.78 16 5 C 0.06 2.51 3.43 45.44 0.16 2.67 16 6 H 0.04 1.81 7.76 -2.39 -0.02 1.79 16 7 N -0.68 -31.13 5.45 -474.47 -2.59 -33.72 16 8 C 0.24 11.97 2.36 43.43 0.10 12.07 16 9 H 0.02 0.99 7.79 -2.39 -0.02 0.97 16 10 C -0.56 -29.77 8.69 25.60 0.22 -29.55 16 11 H 0.04 2.16 7.81 -2.91 -0.02 2.13 16 12 C 0.04 2.23 5.05 84.65 0.43 2.66 16 13 N -0.88 -45.35 7.97 21.45 0.17 -45.18 16 14 Si 0.94 42.48 29.54 68.60 2.03 44.51 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 18 C -0.04 -2.15 4.79 -19.86 -0.10 -2.24 16 19 C -0.07 -3.28 7.66 22.27 0.17 -3.11 16 20 C -0.16 -6.32 10.05 22.27 0.22 -6.09 16 21 C -0.15 -5.44 10.05 22.27 0.22 -5.22 16 22 C -0.14 -5.29 10.05 22.27 0.22 -5.07 16 23 C -0.15 -6.70 9.70 22.27 0.22 -6.48 16 24 C -0.11 -3.62 3.49 -10.27 -0.04 -3.65 16 25 H 0.08 2.79 8.10 -2.39 -0.02 2.77 16 26 C -0.13 -4.26 9.71 71.98 0.70 -3.56 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.18 7.95 -2.39 -0.02 1.17 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 2.60 7.97 -2.39 -0.02 2.58 16 32 H 0.36 17.57 5.34 -89.70 -0.48 17.10 16 33 H 0.27 13.19 8.31 -92.71 -0.77 12.41 16 34 H 0.13 6.28 5.59 -2.91 -0.02 6.26 16 35 H 0.12 4.29 8.06 -2.91 -0.02 4.26 16 36 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 37 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 38 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 39 H 0.06 1.70 7.94 -2.39 -0.02 1.68 16 40 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -55.04 325.84 3.55 -51.50 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: 0.51 Total: 39.25 kcal Atomic # 6 Polarization: -59.78 SS G_CDS: 3.42 Total: -56.36 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -2.42 Total: -78.90 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -55.04 3.55 -51.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385668496.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.964 kcal (2) G-P(sol) polarization free energy of solvation -55.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds