Wall clock time and date at job start Mon Mar 30 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 112.85301 * 2 1 4 4 C 1.53780 * 113.61100 * 228.68899 * 2 1 3 5 5 C 1.53782 * 87.08163 * 220.02166 * 4 2 1 6 6 H 1.09001 * 113.61985 * 270.88716 * 5 4 2 7 7 N 1.46900 * 113.61462 * 139.98252 * 5 4 2 8 8 C 1.46898 * 111.00280 * 107.50720 * 7 5 4 9 9 H 1.09001 * 109.47296 * 34.99818 * 8 7 5 10 10 C 1.50698 * 109.46722 * 275.00270 * 8 7 5 11 11 H 1.08003 * 120.00381 * 116.80037 * 10 8 7 12 12 C 1.37876 * 120.00011 * 296.79175 * 10 8 7 13 13 N 1.31512 * 120.00027 * 9.63888 * 12 10 8 14 14 Si 1.86802 * 120.00237 * 189.62923 * 12 10 8 15 15 H 1.48504 * 109.46968 * 60.00536 * 14 12 10 16 16 H 1.48503 * 109.47222 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47207 * 300.00736 * 14 12 10 18 18 C 1.50696 * 109.47422 * 155.00001 * 8 7 5 19 19 C 1.38231 * 120.00059 * 28.86260 * 18 8 7 20 20 C 1.38241 * 119.99931 * 179.78762 * 19 18 8 21 21 C 1.38224 * 119.99969 * 0.46481 * 20 19 18 22 22 C 1.38238 * 120.00097 * 359.76638 * 21 20 19 23 23 C 1.38231 * 120.00032 * 0.02562 * 22 21 20 24 24 C 1.53781 * 87.08107 * 25.43555 * 5 4 2 25 25 H 1.09000 * 113.61534 * 220.01844 * 24 5 4 26 26 C 1.53005 * 113.69078 * 89.12223 * 24 5 4 27 27 H 1.08997 * 109.47264 * 288.81035 * 1 2 3 28 28 H 1.09007 * 109.46720 * 48.80053 * 1 2 3 29 29 H 1.08996 * 109.47761 * 168.80155 * 1 2 3 30 30 H 1.08999 * 113.61853 * 334.56952 * 4 2 1 31 31 H 1.08994 * 113.61294 * 105.39571 * 4 2 1 32 32 H 1.00901 * 110.99859 * 343.54882 * 7 5 4 33 33 H 0.97003 * 120.00411 * 179.97438 * 13 12 10 34 34 H 1.08004 * 119.99851 * 0.02562 * 19 18 8 35 35 H 1.08006 * 119.99658 * 180.25647 * 20 19 18 36 36 H 1.08004 * 120.00328 * 179.78926 * 21 20 19 37 37 H 1.08007 * 119.99926 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.00055 * 179.97438 * 23 22 21 39 39 H 1.08995 * 109.47006 * 301.60598 * 26 24 5 40 40 H 1.08998 * 109.46989 * 61.60785 * 26 24 5 41 41 H 1.09002 * 109.46864 * 181.60095 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9533 1.0044 0.0000 4 6 2.1459 -0.9302 -1.0584 5 6 3.1922 -1.3137 0.0013 6 1 4.0711 -0.6689 0.0008 7 7 3.5318 -2.7429 0.0027 8 6 4.8748 -2.9656 -0.5492 9 1 5.5250 -2.1369 -0.2686 10 6 4.7923 -3.0528 -2.0514 11 1 5.2943 -2.3181 -2.6635 12 6 4.0760 -4.0707 -2.6445 13 7 3.3120 -4.8509 -1.9116 14 14 4.1904 -4.3416 -4.4893 15 1 5.5989 -4.6305 -4.8607 16 1 3.3308 -5.4893 -4.8754 17 1 3.7321 -3.1199 -5.1983 18 6 5.4362 -4.2523 -0.0014 19 6 4.5847 -5.2800 0.3587 20 6 5.1000 -6.4619 0.8572 21 6 6.4660 -6.6126 1.0045 22 6 7.3173 -5.5831 0.6489 23 6 6.8024 -4.4028 0.1465 24 6 2.1460 -0.9281 1.0603 25 1 2.5650 -0.3971 1.9150 26 6 1.2305 -2.0838 1.4694 27 1 -0.3633 0.3313 0.9727 28 1 -0.3633 0.6770 -0.7733 29 1 -0.3634 -1.0080 -0.1996 30 1 1.4944 -1.7549 -1.3472 31 1 2.5637 -0.4009 -1.9147 32 1 2.8407 -3.2793 -0.5000 33 1 2.8078 -5.5669 -2.3289 34 1 3.5171 -5.1609 0.2470 35 1 4.4349 -7.2664 1.1346 36 1 6.8685 -7.5347 1.3972 37 1 8.3847 -5.7007 0.7645 38 1 7.4674 -3.5983 -0.1310 39 1 0.7107 -2.4643 0.5901 40 1 1.8276 -2.8812 1.9118 41 1 0.5011 -1.7292 2.1977 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385669077.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:53 Heat of formation + Delta-G solvation = 38.604518 kcal Electronic energy + Delta-G solvation = -20060.746678 eV Core-core repulsion = 17326.629119 eV Total energy + Delta-G solvation = -2734.117559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.21484 -38.01439 -34.68381 -31.61707 -30.14685 -29.62044 -28.83413 -27.90350 -26.01747 -23.20202 -22.73161 -21.52863 -20.59057 -19.75978 -17.65105 -16.51843 -15.83164 -15.40500 -14.95884 -14.14230 -14.08144 -13.61043 -13.54910 -13.05061 -12.63646 -12.23592 -12.08837 -11.90554 -11.68514 -11.59609 -11.52123 -11.45614 -11.31102 -10.97800 -10.79551 -10.69272 -10.39650 -10.03665 -9.95776 -9.67321 -9.48463 -9.38859 -9.22187 -8.65259 -7.75757 -7.38052 -6.94686 -6.04569 -4.26191 2.56622 2.68187 3.23316 3.28903 3.32820 4.31922 5.02666 5.07493 5.12851 5.27219 5.28383 5.57012 5.76957 5.86560 5.92936 5.96451 6.01658 6.05287 6.15569 6.19520 6.26382 6.30495 6.38371 6.47830 6.50124 6.58624 6.73187 6.78212 6.84145 6.88207 6.93980 7.10008 7.16617 7.20111 7.35610 7.58394 7.67488 7.83585 8.04709 8.09954 8.29088 8.50661 8.87506 9.13986 9.45273 10.82062 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016445 B = 0.008278 C = 0.006361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.264898 B = 3381.776529 C = 4400.668679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 H 0.077 0.923 4 C -0.148 4.148 5 C 0.089 3.911 6 H 0.076 0.924 7 N -0.675 5.675 8 C 0.238 3.762 9 H 0.034 0.966 10 C -0.539 4.539 11 H 0.055 0.945 12 C 0.078 3.922 13 N -0.875 5.875 14 Si 0.886 3.114 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.278 1.278 18 C -0.019 4.019 19 C -0.049 4.049 20 C -0.150 4.150 21 C -0.153 4.153 22 C -0.146 4.146 23 C -0.134 4.134 24 C -0.102 4.102 25 H 0.060 0.940 26 C -0.119 4.119 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.368 0.632 33 H 0.266 0.734 34 H 0.143 0.857 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.401 3.589 4.647 6.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.140 4.140 3 H 0.096 0.904 4 C -0.188 4.188 5 C -0.023 4.023 6 H 0.094 0.906 7 N -0.309 5.309 8 C 0.129 3.871 9 H 0.052 0.948 10 C -0.578 4.578 11 H 0.073 0.927 12 C -0.126 4.126 13 N -0.512 5.512 14 Si 0.714 3.286 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.204 1.204 18 C -0.020 4.020 19 C -0.067 4.067 20 C -0.168 4.168 21 C -0.171 4.171 22 C -0.164 4.164 23 C -0.152 4.152 24 C -0.122 4.122 25 H 0.079 0.921 26 C -0.176 4.176 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.193 0.807 33 H 0.077 0.923 34 H 0.160 0.840 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.325 3.394 5.267 6.684 hybrid contribution 0.083 -0.171 -2.266 2.274 sum -2.242 3.223 3.002 4.942 Atomic orbital electron populations 1.21683 0.95727 1.01504 1.00436 1.22498 0.94837 0.97903 0.98714 0.90434 1.23596 0.99352 0.98763 0.97052 1.22654 0.94439 0.92030 0.93166 0.90635 1.60757 1.06647 1.04382 1.59107 1.18153 0.87484 0.89863 0.91555 0.94828 1.21594 1.32348 1.12012 0.91840 0.92675 1.24904 0.94535 0.95141 0.97992 1.69624 1.27132 1.19371 1.35105 0.86742 0.78231 0.77704 0.85899 1.20276 1.21179 1.20362 1.20154 0.91911 0.97861 0.92068 1.21288 1.01743 0.91042 0.92658 1.21080 0.94586 0.98433 1.02689 1.20748 0.94092 0.98181 1.04071 1.20737 0.98014 0.94634 1.02998 1.20840 0.95521 0.97239 1.01642 1.22604 0.97158 0.95977 0.96434 0.92137 1.21361 0.98080 0.97898 1.00270 0.93313 0.93653 0.92449 0.90345 0.92707 0.80650 0.92320 0.83980 0.88219 0.88433 0.88235 0.87945 0.92958 0.91357 0.94420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.88 37.16 0.33 -1.48 16 2 C -0.12 -1.82 4.30 -89.80 -0.39 -2.20 16 3 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 4 C -0.15 -2.68 6.90 -25.92 -0.18 -2.86 16 5 C 0.09 1.70 3.94 -66.90 -0.26 1.43 16 6 H 0.08 1.46 7.48 -51.93 -0.39 1.07 16 7 N -0.67 -14.56 4.46 -101.33 -0.45 -15.01 16 8 C 0.24 5.59 2.49 -70.02 -0.17 5.41 16 9 H 0.03 0.78 7.42 -51.93 -0.39 0.40 16 10 C -0.54 -13.70 8.73 -34.44 -0.30 -14.00 16 11 H 0.05 1.43 7.83 -52.48 -0.41 1.02 16 12 C 0.08 1.97 5.04 -17.82 -0.09 1.88 16 13 N -0.87 -21.91 8.05 55.43 0.45 -21.46 16 14 Si 0.89 20.46 29.55 -169.99 -5.02 15.44 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 C -0.02 -0.44 4.67 -104.63 -0.49 -0.93 16 19 C -0.05 -1.11 7.51 -39.58 -0.30 -1.41 16 20 C -0.15 -3.11 10.05 -39.59 -0.40 -3.51 16 21 C -0.15 -2.98 10.05 -39.59 -0.40 -3.38 16 22 C -0.15 -2.88 10.05 -39.58 -0.40 -3.28 16 23 C -0.13 -2.91 9.71 -39.58 -0.38 -3.29 16 24 C -0.10 -1.66 4.44 -89.80 -0.40 -2.06 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 C -0.12 -1.89 7.86 37.16 0.29 -1.60 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.56 8.14 -51.92 -0.42 0.13 16 29 H 0.06 0.79 6.55 -51.93 -0.34 0.45 16 30 H 0.08 1.53 7.14 -51.93 -0.37 1.16 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.37 8.51 5.21 -39.29 -0.20 8.31 16 33 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 34 H 0.14 3.40 5.67 -52.48 -0.30 3.11 16 35 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 36 H 0.10 1.63 8.06 -52.48 -0.42 1.20 16 37 H 0.10 1.69 8.06 -52.48 -0.42 1.26 16 38 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 39 H 0.05 0.86 6.18 -51.93 -0.32 0.54 16 40 H 0.07 1.18 7.84 -51.93 -0.41 0.77 16 41 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 318.70 15.07 4.80 4.80 Total: -1.00 -24.83 318.70 -10.25 -35.08 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -6.49 Total: 12.43 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: -3.53 Total: -31.27 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: -0.01 Total: -36.47 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -24.83 -10.25 -35.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385669077.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.680 kcal (2) G-P(sol) polarization free energy of solvation -24.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds