Wall clock time and date at job start Mon Mar 30 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 112.85301 * 2 1 4 4 C 1.53780 * 113.61100 * 228.68899 * 2 1 3 5 5 C 1.53782 * 87.08163 * 220.02166 * 4 2 1 6 6 H 1.09001 * 113.61985 * 270.88716 * 5 4 2 7 7 N 1.46900 * 113.61462 * 139.98252 * 5 4 2 8 8 C 1.46898 * 111.00280 * 107.50720 * 7 5 4 9 9 H 1.09001 * 109.47296 * 34.99818 * 8 7 5 10 10 C 1.50698 * 109.46722 * 275.00270 * 8 7 5 11 11 H 1.08003 * 120.00381 * 116.80037 * 10 8 7 12 12 C 1.37876 * 120.00011 * 296.79175 * 10 8 7 13 13 N 1.31512 * 120.00027 * 9.63888 * 12 10 8 14 14 Si 1.86802 * 120.00237 * 189.62923 * 12 10 8 15 15 H 1.48504 * 109.46968 * 60.00536 * 14 12 10 16 16 H 1.48503 * 109.47222 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47207 * 300.00736 * 14 12 10 18 18 C 1.50696 * 109.47422 * 155.00001 * 8 7 5 19 19 C 1.38231 * 120.00059 * 28.86260 * 18 8 7 20 20 C 1.38241 * 119.99931 * 179.78762 * 19 18 8 21 21 C 1.38224 * 119.99969 * 0.46481 * 20 19 18 22 22 C 1.38238 * 120.00097 * 359.76638 * 21 20 19 23 23 C 1.38231 * 120.00032 * 0.02562 * 22 21 20 24 24 C 1.53781 * 87.08107 * 25.43555 * 5 4 2 25 25 H 1.09000 * 113.61534 * 220.01844 * 24 5 4 26 26 C 1.53005 * 113.69078 * 89.12223 * 24 5 4 27 27 H 1.08997 * 109.47264 * 288.81035 * 1 2 3 28 28 H 1.09007 * 109.46720 * 48.80053 * 1 2 3 29 29 H 1.08996 * 109.47761 * 168.80155 * 1 2 3 30 30 H 1.08999 * 113.61853 * 334.56952 * 4 2 1 31 31 H 1.08994 * 113.61294 * 105.39571 * 4 2 1 32 32 H 1.00901 * 110.99859 * 343.54882 * 7 5 4 33 33 H 0.97003 * 120.00411 * 179.97438 * 13 12 10 34 34 H 1.08004 * 119.99851 * 0.02562 * 19 18 8 35 35 H 1.08006 * 119.99658 * 180.25647 * 20 19 18 36 36 H 1.08004 * 120.00328 * 179.78926 * 21 20 19 37 37 H 1.08007 * 119.99926 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.00055 * 179.97438 * 23 22 21 39 39 H 1.08995 * 109.47006 * 301.60598 * 26 24 5 40 40 H 1.08998 * 109.46989 * 61.60785 * 26 24 5 41 41 H 1.09002 * 109.46864 * 181.60095 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9533 1.0044 0.0000 4 6 2.1459 -0.9302 -1.0584 5 6 3.1922 -1.3137 0.0013 6 1 4.0711 -0.6689 0.0008 7 7 3.5318 -2.7429 0.0027 8 6 4.8748 -2.9656 -0.5492 9 1 5.5250 -2.1369 -0.2686 10 6 4.7923 -3.0528 -2.0514 11 1 5.2943 -2.3181 -2.6635 12 6 4.0760 -4.0707 -2.6445 13 7 3.3120 -4.8509 -1.9116 14 14 4.1904 -4.3416 -4.4893 15 1 5.5989 -4.6305 -4.8607 16 1 3.3308 -5.4893 -4.8754 17 1 3.7321 -3.1199 -5.1983 18 6 5.4362 -4.2523 -0.0014 19 6 4.5847 -5.2800 0.3587 20 6 5.1000 -6.4619 0.8572 21 6 6.4660 -6.6126 1.0045 22 6 7.3173 -5.5831 0.6489 23 6 6.8024 -4.4028 0.1465 24 6 2.1460 -0.9281 1.0603 25 1 2.5650 -0.3971 1.9150 26 6 1.2305 -2.0838 1.4694 27 1 -0.3633 0.3313 0.9727 28 1 -0.3633 0.6770 -0.7733 29 1 -0.3634 -1.0080 -0.1996 30 1 1.4944 -1.7549 -1.3472 31 1 2.5637 -0.4009 -1.9147 32 1 2.8407 -3.2793 -0.5000 33 1 2.8078 -5.5669 -2.3289 34 1 3.5171 -5.1609 0.2470 35 1 4.4349 -7.2664 1.1346 36 1 6.8685 -7.5347 1.3972 37 1 8.3847 -5.7007 0.7645 38 1 7.4674 -3.5983 -0.1310 39 1 0.7107 -2.4643 0.5901 40 1 1.8276 -2.8812 1.9118 41 1 0.5011 -1.7292 2.1977 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385669077.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:53 Heat of formation + Delta-G solvation = 28.692291 kcal Electronic energy + Delta-G solvation = -20061.176505 eV Core-core repulsion = 17326.629119 eV Total energy + Delta-G solvation = -2734.547385 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.66700 -39.62693 -36.41133 -33.43724 -31.70358 -31.22811 -30.16196 -29.34413 -27.80963 -24.67598 -24.41282 -23.12486 -22.06267 -21.46332 -19.04876 -18.39477 -17.40474 -16.83729 -16.79297 -15.76075 -15.65653 -15.21444 -14.95766 -14.70376 -14.10564 -13.80208 -13.67537 -13.34015 -13.24564 -13.13663 -13.01961 -12.88852 -12.77947 -12.76674 -12.52128 -12.30914 -11.97767 -11.76443 -11.32751 -11.30014 -11.24860 -10.85626 -10.69126 -10.46108 -9.40701 -9.08249 -8.68253 -7.93477 -6.23732 0.90295 1.04804 1.36095 1.39899 1.44271 2.39847 3.12389 3.40831 3.77121 3.85353 3.94376 4.10657 4.35393 4.40469 4.44467 4.60765 4.62664 4.73452 4.77386 4.84169 4.86496 4.96205 5.02798 5.04710 5.09142 5.18248 5.19928 5.25229 5.30271 5.38495 5.49625 5.54114 5.68235 5.70116 5.73464 5.83599 5.94451 6.11938 6.15548 6.40991 6.56567 6.66242 7.06262 7.30048 7.51020 8.86171 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016445 B = 0.008278 C = 0.006361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.264898 B = 3381.776529 C = 4400.668679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 H 0.093 0.907 4 C -0.149 4.149 5 C 0.072 3.928 6 H 0.067 0.933 7 N -0.671 5.671 8 C 0.239 3.761 9 H 0.022 0.978 10 C -0.556 4.556 11 H 0.038 0.962 12 C 0.049 3.951 13 N -0.876 5.876 14 Si 0.930 3.070 15 H -0.284 1.284 16 H -0.282 1.282 17 H -0.278 1.278 18 C -0.045 4.045 19 C -0.065 4.065 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.095 4.095 25 H 0.072 0.928 26 C -0.112 4.112 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.358 0.642 33 H 0.265 0.735 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.107 0.893 39 H 0.041 0.959 40 H 0.049 0.951 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.518 3.309 5.534 6.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.122 4.122 3 H 0.111 0.889 4 C -0.189 4.189 5 C -0.040 4.040 6 H 0.085 0.915 7 N -0.304 5.304 8 C 0.130 3.870 9 H 0.040 0.960 10 C -0.595 4.595 11 H 0.057 0.943 12 C -0.154 4.154 13 N -0.514 5.514 14 Si 0.758 3.242 15 H -0.210 1.210 16 H -0.207 1.207 17 H -0.204 1.204 18 C -0.046 4.046 19 C -0.084 4.084 20 C -0.175 4.175 21 C -0.167 4.167 22 C -0.161 4.161 23 C -0.170 4.170 24 C -0.114 4.114 25 H 0.091 0.909 26 C -0.169 4.169 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.182 0.818 33 H 0.075 0.925 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.125 0.875 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.447 3.126 6.166 7.333 hybrid contribution 0.176 -0.097 -2.516 2.524 sum -2.271 3.028 3.650 5.258 Atomic orbital electron populations 1.21656 0.93919 1.01467 1.01992 1.22432 0.96266 0.97630 0.95831 0.88921 1.23504 0.99149 0.99046 0.97174 1.22873 0.95014 0.90625 0.95478 0.91530 1.60790 1.05470 1.05725 1.58419 1.18073 0.88256 0.89961 0.90687 0.96026 1.21683 1.32730 1.12101 0.92963 0.94328 1.25316 0.94509 0.95152 1.00395 1.69738 1.26895 1.19134 1.35586 0.86061 0.77606 0.77531 0.83021 1.20994 1.20721 1.20364 1.20252 0.92937 0.97893 0.93497 1.21188 1.00916 0.92168 0.94150 1.21363 0.95917 0.98093 1.02106 1.21161 0.93408 0.99369 1.02731 1.21125 0.99909 0.93644 1.01432 1.21064 0.95052 0.98581 1.02325 1.22557 0.96095 0.96338 0.96404 0.90931 1.21291 0.98142 0.97210 1.00305 0.91399 0.92468 0.93299 0.92119 0.93910 0.81783 0.92522 0.85750 0.86194 0.84802 0.84934 0.87490 0.94039 0.93220 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.88 71.98 0.64 -2.60 16 2 C -0.10 -2.95 4.30 -10.27 -0.04 -3.00 16 3 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 4 C -0.15 -5.49 6.90 31.12 0.21 -5.28 16 5 C 0.07 2.79 3.94 45.44 0.18 2.97 16 6 H 0.07 2.67 7.48 -2.39 -0.02 2.65 16 7 N -0.67 -30.02 4.46 -474.49 -2.11 -32.14 16 8 C 0.24 11.66 2.49 43.42 0.11 11.77 16 9 H 0.02 1.06 7.42 -2.39 -0.02 1.04 16 10 C -0.56 -29.21 8.73 25.60 0.22 -28.99 16 11 H 0.04 2.09 7.83 -2.91 -0.02 2.07 16 12 C 0.05 2.54 5.04 84.65 0.43 2.96 16 13 N -0.88 -44.72 8.05 21.45 0.17 -44.55 16 14 Si 0.93 42.46 29.55 68.60 2.03 44.49 16 15 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 C -0.04 -2.13 4.67 -19.87 -0.09 -2.22 16 19 C -0.07 -3.02 7.51 22.27 0.17 -2.85 16 20 C -0.16 -6.29 10.05 22.27 0.22 -6.07 16 21 C -0.15 -5.38 10.05 22.27 0.22 -5.16 16 22 C -0.14 -5.33 10.05 22.27 0.22 -5.11 16 23 C -0.15 -6.54 9.71 22.27 0.22 -6.33 16 24 C -0.09 -2.99 4.44 -10.26 -0.05 -3.03 16 25 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 26 C -0.11 -3.48 7.86 71.98 0.57 -2.92 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.05 1.28 6.55 -2.39 -0.02 1.26 16 30 H 0.06 2.44 7.14 -2.39 -0.02 2.42 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.36 17.23 5.21 -89.69 -0.47 16.76 16 33 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 34 H 0.12 6.13 5.67 -2.91 -0.02 6.11 16 35 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 36 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 37 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 38 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 39 H 0.04 1.36 6.18 -2.39 -0.01 1.35 16 40 H 0.05 1.72 7.84 -2.39 -0.02 1.70 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -53.62 318.70 3.85 -49.77 By element: Atomic # 1 Polarization: 37.74 SS G_CDS: 0.53 Total: 38.27 kcal Atomic # 6 Polarization: -59.07 SS G_CDS: 3.23 Total: -55.84 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -1.94 Total: -76.69 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -53.62 3.85 -49.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385669077.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.463 kcal (2) G-P(sol) polarization free energy of solvation -53.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds