Wall clock time and date at job start Mon Mar 30 2020 06:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 112.85151 * 2 1 4 4 C 1.53784 * 113.68780 * 228.73500 * 2 1 3 5 5 C 1.53784 * 87.07942 * 220.00606 * 4 2 1 6 6 H 1.09005 * 113.61279 * 270.88211 * 5 4 2 7 7 N 1.46897 * 113.69009 * 139.99545 * 5 4 2 8 8 C 1.46895 * 111.00237 * 107.46188 * 7 5 4 9 9 H 1.08999 * 109.47117 * 35.00059 * 8 7 5 10 10 C 1.50697 * 109.47616 * 274.99783 * 8 7 5 11 11 H 1.07996 * 120.00092 * 125.30335 * 10 8 7 12 12 C 1.37884 * 119.99945 * 305.31165 * 10 8 7 13 13 N 1.31510 * 119.99681 * 9.47046 * 12 10 8 14 14 Si 1.86796 * 120.00136 * 189.47343 * 12 10 8 15 15 H 1.48507 * 109.46873 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47094 * 119.99564 * 14 12 10 17 17 H 1.48498 * 109.47414 * 239.99876 * 14 12 10 18 18 C 1.50700 * 109.47198 * 154.99726 * 8 7 5 19 19 C 1.38239 * 119.99850 * 32.37875 * 18 8 7 20 20 C 1.38236 * 119.99961 * 179.80648 * 19 18 8 21 21 C 1.38230 * 120.00110 * 0.40097 * 20 19 18 22 22 C 1.38237 * 120.00178 * 359.85449 * 21 20 19 23 23 C 1.38234 * 119.99600 * 359.95515 * 22 21 20 24 24 C 1.53774 * 113.61674 * 131.19991 * 2 1 3 25 25 H 1.08994 * 113.61807 * 25.42917 * 24 2 1 26 26 C 1.53005 * 113.61605 * 254.61068 * 24 2 1 27 27 H 1.09008 * 109.46903 * 290.33543 * 1 2 3 28 28 H 1.08996 * 109.47398 * 50.32758 * 1 2 3 29 29 H 1.08996 * 109.47416 * 170.33300 * 1 2 3 30 30 H 1.08991 * 113.61413 * 334.55712 * 4 2 1 31 31 H 1.09005 * 113.61419 * 105.45668 * 4 2 1 32 32 H 1.00902 * 110.99760 * 231.42188 * 7 5 4 33 33 H 0.97002 * 120.00063 * 179.97438 * 13 12 10 34 34 H 1.08004 * 120.00123 * 359.97438 * 19 18 8 35 35 H 1.08004 * 119.99928 * 180.22845 * 20 19 18 36 36 H 1.08005 * 120.00320 * 179.82777 * 21 20 19 37 37 H 1.07999 * 120.00448 * 179.97438 * 22 21 20 38 38 H 1.08000 * 119.99928 * 179.97438 * 23 22 21 39 39 H 1.08998 * 109.46929 * 79.50413 * 26 24 2 40 40 H 1.08995 * 109.47223 * 199.50674 * 26 24 2 41 41 H 1.09004 * 109.46890 * 319.50728 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9533 1.0045 0.0000 4 6 2.1478 -0.9288 -1.0586 5 6 3.1936 -1.3119 0.0018 6 1 4.0718 -0.6661 0.0023 7 7 3.5362 -2.7404 0.0039 8 6 4.8798 -2.9604 -0.5475 9 1 5.5281 -2.1303 -0.2669 10 6 4.7983 -3.0484 -2.0497 11 1 5.4069 -2.4000 -2.6625 12 6 3.9465 -3.9567 -2.6418 13 7 3.0731 -4.6131 -1.9097 14 14 4.0330 -4.2550 -4.4838 15 1 5.0918 -3.3976 -5.0748 16 1 4.3514 -5.6827 -4.7396 17 1 2.7244 -3.9213 -5.1014 18 6 5.4437 -4.2457 0.0011 19 6 4.6004 -5.3015 0.2929 20 6 5.1181 -6.4819 0.7924 21 6 6.4780 -6.6038 1.0078 22 6 7.3208 -5.5462 0.7209 23 6 6.8036 -4.3672 0.2178 24 6 2.1460 -0.9281 1.0601 25 1 1.4946 -1.7522 1.3506 26 6 2.7324 -0.1828 2.2609 27 1 -0.3633 0.3572 0.9637 28 1 -0.3634 0.6560 -0.7910 29 1 -0.3634 -1.0130 -0.1726 30 1 1.4974 -1.7539 -1.3484 31 1 2.5670 -0.3984 -1.9136 32 1 3.4577 -3.1297 0.9314 33 1 2.4736 -5.2518 -2.3263 34 1 3.5374 -5.2050 0.1282 35 1 4.4596 -7.3081 1.0169 36 1 6.8822 -7.5251 1.4006 37 1 8.3833 -5.6412 0.8896 38 1 7.4619 -3.5408 -0.0060 39 1 1.9286 0.1020 2.9396 40 1 3.4360 -0.8314 2.7827 41 1 3.2505 0.7119 1.9155 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385669079.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:56 Heat of formation + Delta-G solvation = 44.191386 kcal Electronic energy + Delta-G solvation = -19871.567839 eV Core-core repulsion = 17137.692545 eV Total energy + Delta-G solvation = -2733.875294 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.98338 -38.08661 -34.49848 -31.63834 -30.20930 -29.81802 -29.55006 -27.72514 -26.07609 -22.77818 -22.13919 -21.60262 -20.62374 -19.80892 -18.70793 -16.31705 -15.71558 -14.78581 -14.55835 -14.36228 -14.03467 -13.78043 -13.52432 -13.00654 -12.72011 -12.56109 -12.35883 -12.18478 -12.15378 -11.83616 -11.58420 -11.27128 -11.05072 -10.89529 -10.69689 -10.42875 -10.24836 -10.09400 -10.03332 -9.59808 -9.43199 -9.25155 -9.19297 -8.38577 -7.86234 -7.47503 -6.77752 -5.78950 -3.95484 2.42894 2.52462 3.33585 3.42248 3.45698 4.49940 4.91479 5.04698 5.17384 5.23368 5.40100 5.64147 5.72871 5.77992 5.81234 5.90757 5.91986 5.97337 6.00406 6.10803 6.17963 6.23068 6.29894 6.33551 6.36377 6.51821 6.62161 6.70555 6.73478 6.88534 6.96561 7.07758 7.15612 7.20763 7.33064 7.44806 7.63317 7.93201 7.95373 8.18999 8.26943 8.55467 8.90028 9.15901 9.69830 11.14890 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015553 B = 0.008277 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.913719 B = 3382.020822 C = 4575.350867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 H 0.076 0.924 4 C -0.104 4.104 5 C 0.087 3.913 6 H 0.050 0.950 7 N -0.627 5.627 8 C 0.250 3.750 9 H -0.002 1.002 10 C -0.515 4.515 11 H 0.052 0.948 12 C 0.093 3.907 13 N -0.827 5.827 14 Si 0.872 3.128 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.286 1.286 18 C -0.042 4.042 19 C -0.079 4.079 20 C -0.143 4.143 21 C -0.153 4.153 22 C -0.141 4.141 23 C -0.133 4.133 24 C -0.117 4.117 25 H 0.090 0.910 26 C -0.140 4.140 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.306 0.694 33 H 0.251 0.749 34 H 0.159 0.841 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.047 0.953 40 H 0.050 0.950 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.190 3.883 6.563 7.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.139 4.139 3 H 0.095 0.905 4 C -0.142 4.142 5 C -0.024 4.024 6 H 0.067 0.933 7 N -0.257 5.257 8 C 0.142 3.858 9 H 0.015 0.985 10 C -0.553 4.553 11 H 0.070 0.930 12 C -0.114 4.114 13 N -0.460 5.460 14 Si 0.700 3.300 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.212 1.212 18 C -0.043 4.043 19 C -0.098 4.098 20 C -0.161 4.161 21 C -0.171 4.171 22 C -0.159 4.159 23 C -0.152 4.152 24 C -0.136 4.136 25 H 0.109 0.891 26 C -0.197 4.197 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.124 0.876 33 H 0.062 0.938 34 H 0.177 0.823 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.659 3.612 5.958 7.162 hybrid contribution 0.756 -0.069 -0.563 0.946 sum -0.902 3.543 5.395 6.517 Atomic orbital electron populations 1.21662 0.95682 1.01601 1.00322 1.22533 0.94775 0.97866 0.98676 0.90543 1.22922 0.98098 0.97545 0.95682 1.22772 0.94374 0.90782 0.94460 0.93276 1.60981 1.30323 1.10156 1.24193 1.18237 0.84860 0.87984 0.94694 0.98457 1.20814 1.24308 1.20773 0.89440 0.93022 1.24781 0.94461 0.95671 0.96504 1.70015 1.17800 1.24308 1.33902 0.86879 0.77742 0.77977 0.87361 1.20059 1.21214 1.21184 1.20592 0.92503 0.98953 0.92301 1.21753 1.03044 0.91127 0.93852 1.21159 0.94709 0.98393 1.01873 1.20809 0.94227 0.98057 1.04044 1.20794 0.98210 0.94300 1.02603 1.20907 0.95606 0.97320 1.01378 1.22943 0.98852 0.98234 0.93581 0.89143 1.21728 1.00095 0.99866 0.98026 0.93572 0.93422 0.92529 0.89296 0.93046 0.87575 0.93841 0.82341 0.87952 0.88219 0.88034 0.87801 0.93436 0.93063 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.70 37.16 0.36 -1.48 16 2 C -0.12 -1.83 3.91 -89.81 -0.35 -2.18 16 3 H 0.08 1.11 8.01 -51.93 -0.42 0.69 16 4 C -0.10 -1.97 7.44 -25.92 -0.19 -2.16 16 5 C 0.09 1.67 3.57 -66.90 -0.24 1.43 16 6 H 0.05 0.98 7.43 -51.93 -0.39 0.60 16 7 N -0.63 -13.56 4.40 -101.33 -0.45 -14.01 16 8 C 0.25 5.89 2.48 -70.02 -0.17 5.72 16 9 H 0.00 -0.05 7.39 -51.93 -0.38 -0.44 16 10 C -0.52 -13.55 8.73 -34.44 -0.30 -13.86 16 11 H 0.05 1.40 7.83 -52.49 -0.41 0.99 16 12 C 0.09 2.44 5.20 -17.82 -0.09 2.35 16 13 N -0.83 -21.52 9.24 55.43 0.51 -21.01 16 14 Si 0.87 20.94 29.55 -169.99 -5.02 15.92 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 C -0.04 -0.96 4.65 -104.62 -0.49 -1.45 16 19 C -0.08 -1.77 7.65 -39.58 -0.30 -2.08 16 20 C -0.14 -2.87 10.05 -39.59 -0.40 -3.27 16 21 C -0.15 -2.87 10.05 -39.58 -0.40 -3.27 16 22 C -0.14 -2.68 10.05 -39.58 -0.40 -3.07 16 23 C -0.13 -2.80 9.69 -39.58 -0.38 -3.19 16 24 C -0.12 -1.85 3.49 -89.81 -0.31 -2.16 16 25 H 0.09 1.50 8.10 -51.93 -0.42 1.08 16 26 C -0.14 -1.91 9.68 37.16 0.36 -1.55 16 27 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.81 7.98 -51.93 -0.41 0.40 16 30 H 0.09 1.89 7.99 -51.93 -0.41 1.48 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.31 6.40 7.48 -39.29 -0.29 6.11 16 33 H 0.25 6.44 8.31 -40.82 -0.34 6.10 16 34 H 0.16 3.78 5.60 -52.48 -0.29 3.49 16 35 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 36 H 0.10 1.59 8.06 -52.48 -0.42 1.16 16 37 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.66 8.01 -51.93 -0.42 0.24 16 LS Contribution 327.90 15.07 4.94 4.94 Total: -1.00 -26.08 327.90 -10.11 -36.19 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.79 Total: 8.18 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: -3.31 Total: -30.22 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.07 Total: -35.02 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.08 -10.11 -36.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385669079.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.386 kcal (2) G-P(sol) polarization free energy of solvation -26.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds