Wall clock time and date at job start Mon Mar 30 2020 06:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 112.85151 * 2 1 4 4 C 1.53784 * 113.68780 * 228.73500 * 2 1 3 5 5 C 1.53784 * 87.07942 * 220.00606 * 4 2 1 6 6 H 1.09005 * 113.61279 * 270.88211 * 5 4 2 7 7 N 1.46897 * 113.69009 * 139.99545 * 5 4 2 8 8 C 1.46895 * 111.00237 * 107.46188 * 7 5 4 9 9 H 1.08999 * 109.47117 * 35.00059 * 8 7 5 10 10 C 1.50697 * 109.47616 * 274.99783 * 8 7 5 11 11 H 1.07996 * 120.00092 * 125.30335 * 10 8 7 12 12 C 1.37884 * 119.99945 * 305.31165 * 10 8 7 13 13 N 1.31510 * 119.99681 * 9.47046 * 12 10 8 14 14 Si 1.86796 * 120.00136 * 189.47343 * 12 10 8 15 15 H 1.48507 * 109.46873 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47094 * 119.99564 * 14 12 10 17 17 H 1.48498 * 109.47414 * 239.99876 * 14 12 10 18 18 C 1.50700 * 109.47198 * 154.99726 * 8 7 5 19 19 C 1.38239 * 119.99850 * 32.37875 * 18 8 7 20 20 C 1.38236 * 119.99961 * 179.80648 * 19 18 8 21 21 C 1.38230 * 120.00110 * 0.40097 * 20 19 18 22 22 C 1.38237 * 120.00178 * 359.85449 * 21 20 19 23 23 C 1.38234 * 119.99600 * 359.95515 * 22 21 20 24 24 C 1.53774 * 113.61674 * 131.19991 * 2 1 3 25 25 H 1.08994 * 113.61807 * 25.42917 * 24 2 1 26 26 C 1.53005 * 113.61605 * 254.61068 * 24 2 1 27 27 H 1.09008 * 109.46903 * 290.33543 * 1 2 3 28 28 H 1.08996 * 109.47398 * 50.32758 * 1 2 3 29 29 H 1.08996 * 109.47416 * 170.33300 * 1 2 3 30 30 H 1.08991 * 113.61413 * 334.55712 * 4 2 1 31 31 H 1.09005 * 113.61419 * 105.45668 * 4 2 1 32 32 H 1.00902 * 110.99760 * 231.42188 * 7 5 4 33 33 H 0.97002 * 120.00063 * 179.97438 * 13 12 10 34 34 H 1.08004 * 120.00123 * 359.97438 * 19 18 8 35 35 H 1.08004 * 119.99928 * 180.22845 * 20 19 18 36 36 H 1.08005 * 120.00320 * 179.82777 * 21 20 19 37 37 H 1.07999 * 120.00448 * 179.97438 * 22 21 20 38 38 H 1.08000 * 119.99928 * 179.97438 * 23 22 21 39 39 H 1.08998 * 109.46929 * 79.50413 * 26 24 2 40 40 H 1.08995 * 109.47223 * 199.50674 * 26 24 2 41 41 H 1.09004 * 109.46890 * 319.50728 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9533 1.0045 0.0000 4 6 2.1478 -0.9288 -1.0586 5 6 3.1936 -1.3119 0.0018 6 1 4.0718 -0.6661 0.0023 7 7 3.5362 -2.7404 0.0039 8 6 4.8798 -2.9604 -0.5475 9 1 5.5281 -2.1303 -0.2669 10 6 4.7983 -3.0484 -2.0497 11 1 5.4069 -2.4000 -2.6625 12 6 3.9465 -3.9567 -2.6418 13 7 3.0731 -4.6131 -1.9097 14 14 4.0330 -4.2550 -4.4838 15 1 5.0918 -3.3976 -5.0748 16 1 4.3514 -5.6827 -4.7396 17 1 2.7244 -3.9213 -5.1014 18 6 5.4437 -4.2457 0.0011 19 6 4.6004 -5.3015 0.2929 20 6 5.1181 -6.4819 0.7924 21 6 6.4780 -6.6038 1.0078 22 6 7.3208 -5.5462 0.7209 23 6 6.8036 -4.3672 0.2178 24 6 2.1460 -0.9281 1.0601 25 1 1.4946 -1.7522 1.3506 26 6 2.7324 -0.1828 2.2609 27 1 -0.3633 0.3572 0.9637 28 1 -0.3634 0.6560 -0.7910 29 1 -0.3634 -1.0130 -0.1726 30 1 1.4974 -1.7539 -1.3484 31 1 2.5670 -0.3984 -1.9136 32 1 3.4577 -3.1297 0.9314 33 1 2.4736 -5.2518 -2.3263 34 1 3.5374 -5.2050 0.1282 35 1 4.4596 -7.3081 1.0169 36 1 6.8822 -7.5251 1.4006 37 1 8.3833 -5.6412 0.8896 38 1 7.4619 -3.5408 -0.0060 39 1 1.9286 0.1020 2.9396 40 1 3.4360 -0.8314 2.7827 41 1 3.2505 0.7119 1.9155 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385669079.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:56 Heat of formation + Delta-G solvation = 32.797344 kcal Electronic energy + Delta-G solvation = -19872.061922 eV Core-core repulsion = 17137.692545 eV Total energy + Delta-G solvation = -2734.369377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.46992 -39.64125 -36.22506 -33.53572 -31.71696 -31.30415 -30.89991 -29.15670 -27.92557 -24.52795 -23.50399 -23.16961 -22.07587 -21.52804 -20.12788 -18.17997 -17.38052 -16.71334 -16.09183 -15.85662 -15.59945 -15.30845 -14.86301 -14.71170 -14.16439 -13.96210 -13.82753 -13.69362 -13.55223 -13.35195 -13.23161 -12.83230 -12.63995 -12.55844 -12.32489 -12.13354 -11.82495 -11.66439 -11.52739 -11.28150 -11.08238 -10.82372 -10.69140 -10.33305 -9.46420 -9.14175 -8.52659 -7.76938 -6.00619 0.81757 0.93596 1.38248 1.43317 1.49639 2.50210 3.25609 3.37867 3.77188 3.77515 3.87710 4.22605 4.28433 4.36308 4.38024 4.52996 4.64158 4.65753 4.70069 4.71574 4.76289 4.94282 5.01109 5.04566 5.06766 5.11032 5.15459 5.21649 5.29950 5.38467 5.41608 5.46914 5.61519 5.73704 5.80411 5.84553 5.86657 6.03302 6.26246 6.37130 6.54416 6.69025 7.11912 7.32011 7.65610 9.11614 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015553 B = 0.008277 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.913719 B = 3382.020822 C = 4575.350867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 H 0.092 0.908 4 C -0.110 4.110 5 C 0.075 3.925 6 H 0.039 0.961 7 N -0.632 5.632 8 C 0.254 3.746 9 H -0.017 1.017 10 C -0.535 4.535 11 H 0.031 0.969 12 C 0.064 3.936 13 N -0.832 5.832 14 Si 0.916 3.084 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.284 1.284 18 C -0.066 4.066 19 C -0.095 4.095 20 C -0.149 4.149 21 C -0.146 4.146 22 C -0.136 4.136 23 C -0.149 4.149 24 C -0.103 4.103 25 H 0.084 0.916 26 C -0.134 4.134 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.035 0.965 32 H 0.308 0.692 33 H 0.249 0.751 34 H 0.138 0.862 35 H 0.123 0.877 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.046 0.954 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.013 3.547 7.937 8.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.120 4.120 3 H 0.110 0.890 4 C -0.149 4.149 5 C -0.036 4.036 6 H 0.056 0.944 7 N -0.261 5.261 8 C 0.146 3.854 9 H 0.001 0.999 10 C -0.574 4.574 11 H 0.049 0.951 12 C -0.142 4.142 13 N -0.465 5.465 14 Si 0.744 3.256 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.210 1.210 18 C -0.067 4.067 19 C -0.114 4.114 20 C -0.167 4.167 21 C -0.164 4.164 22 C -0.154 4.154 23 C -0.168 4.168 24 C -0.122 4.122 25 H 0.102 0.898 26 C -0.191 4.191 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.126 0.874 33 H 0.059 0.941 34 H 0.156 0.844 35 H 0.141 0.859 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.126 0.874 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.488 3.280 7.337 8.174 hybrid contribution 0.758 0.010 -0.970 1.231 sum -0.730 3.290 6.367 7.204 Atomic orbital electron populations 1.21626 0.93947 1.01279 1.02020 1.22457 0.96139 0.97585 0.95849 0.88991 1.22856 0.98181 0.97735 0.96136 1.22898 0.94707 0.89332 0.96653 0.94354 1.60817 1.29229 1.11855 1.24235 1.18077 0.85483 0.88355 0.93496 0.99940 1.20915 1.24469 1.20963 0.91018 0.95079 1.25167 0.94454 0.95744 0.98880 1.70126 1.17772 1.24258 1.34380 0.86200 0.77417 0.77457 0.84533 1.20530 1.21236 1.20996 1.20571 0.93583 0.98580 0.93988 1.21587 1.02067 0.92293 0.95410 1.21423 0.96057 0.97986 1.01201 1.21233 0.93464 0.99272 1.02453 1.21184 1.00113 0.93237 1.00905 1.21105 0.94982 0.98703 1.01960 1.22793 0.97170 0.98264 0.93969 0.89815 1.21681 1.00703 0.99591 0.97167 0.91332 0.92327 0.93807 0.92068 0.94606 0.87381 0.94117 0.84426 0.85887 0.84473 0.84614 0.87414 0.91128 0.93448 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.70 71.98 0.70 -2.63 16 2 C -0.10 -3.00 3.91 -10.27 -0.04 -3.04 16 3 H 0.09 2.48 8.01 -2.39 -0.02 2.46 16 4 C -0.11 -4.33 7.44 31.12 0.23 -4.10 16 5 C 0.07 2.95 3.57 45.44 0.16 3.12 16 6 H 0.04 1.60 7.43 -2.38 -0.02 1.58 16 7 N -0.63 -28.45 4.40 -474.50 -2.09 -30.54 16 8 C 0.25 12.48 2.48 43.42 0.11 12.59 16 9 H -0.02 -0.85 7.39 -2.39 -0.02 -0.87 16 10 C -0.54 -29.31 8.73 25.60 0.22 -29.08 16 11 H 0.03 1.77 7.83 -2.91 -0.02 1.75 16 12 C 0.06 3.43 5.20 84.66 0.44 3.87 16 13 N -0.83 -44.41 9.24 21.45 0.20 -44.21 16 14 Si 0.92 43.86 29.55 68.60 2.03 45.89 16 15 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 16 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 17 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 18 C -0.07 -3.06 4.65 -19.86 -0.09 -3.16 16 19 C -0.10 -4.27 7.65 22.27 0.17 -4.10 16 20 C -0.15 -5.71 10.05 22.27 0.22 -5.48 16 21 C -0.15 -5.00 10.05 22.27 0.22 -4.78 16 22 C -0.14 -4.81 10.05 22.27 0.22 -4.59 16 23 C -0.15 -6.18 9.69 22.27 0.22 -5.97 16 24 C -0.10 -3.19 3.49 -10.27 -0.04 -3.23 16 25 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 26 C -0.13 -3.41 9.68 71.98 0.70 -2.71 16 27 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.04 1.22 7.98 -2.39 -0.02 1.20 16 30 H 0.06 2.73 7.99 -2.39 -0.02 2.71 16 31 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.31 13.38 7.48 -89.69 -0.67 12.71 16 33 H 0.25 13.00 8.31 -92.71 -0.77 12.23 16 34 H 0.14 6.74 5.60 -2.91 -0.02 6.73 16 35 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 36 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 37 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 38 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 39 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.05 1.35 8.01 -2.38 -0.02 1.33 16 Total: -1.00 -57.26 327.90 3.90 -53.36 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.32 Total: 28.80 kcal Atomic # 6 Polarization: -56.74 SS G_CDS: 3.45 Total: -53.29 kcal Atomic # 7 Polarization: -72.86 SS G_CDS: -1.89 Total: -74.75 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -57.26 3.90 -53.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385669079.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.153 kcal (2) G-P(sol) polarization free energy of solvation -57.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds