Wall clock time and date at job start Mon Mar 30 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 112.84637 * 2 1 4 4 C 1.53778 * 113.61865 * 228.68914 * 2 1 3 5 5 C 1.53786 * 87.07984 * 270.88698 * 4 2 1 6 6 H 1.08999 * 113.68924 * 220.00944 * 5 4 2 7 7 N 1.46900 * 113.61587 * 89.11200 * 5 4 2 8 8 C 1.46904 * 110.99355 * 136.41214 * 7 5 4 9 9 H 1.08996 * 109.47466 * 324.99846 * 8 7 5 10 10 C 1.50699 * 109.47266 * 85.00543 * 8 7 5 11 11 H 1.08006 * 119.99478 * 239.13941 * 10 8 7 12 12 C 1.37875 * 120.00172 * 59.13288 * 10 8 7 13 13 N 1.31512 * 120.00050 * 351.14572 * 12 10 8 14 14 Si 1.86803 * 119.99825 * 171.14221 * 12 10 8 15 15 H 1.48498 * 109.47321 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46801 * 120.00456 * 14 12 10 17 17 H 1.48502 * 109.47189 * 240.00324 * 14 12 10 18 18 C 1.50707 * 109.46587 * 205.00233 * 8 7 5 19 19 C 1.38232 * 119.99880 * 333.78048 * 18 8 7 20 20 C 1.38242 * 119.99879 * 180.25952 * 19 18 8 21 21 C 1.38232 * 119.99730 * 359.53044 * 20 19 18 22 22 C 1.38234 * 120.00042 * 0.42819 * 21 20 19 23 23 C 1.38232 * 119.99804 * 153.76530 * 18 8 7 24 24 C 1.53778 * 113.61263 * 131.18890 * 2 1 3 25 25 H 1.09006 * 113.61645 * 203.66654 * 24 2 1 26 26 C 1.53004 * 113.61418 * 334.57067 * 24 2 1 27 27 H 1.09003 * 109.47474 * 288.96820 * 1 2 3 28 28 H 1.09007 * 109.46922 * 48.97061 * 1 2 3 29 29 H 1.08996 * 109.46973 * 168.96586 * 1 2 3 30 30 H 1.08992 * 113.61356 * 156.33830 * 4 2 1 31 31 H 1.09000 * 113.60927 * 25.42901 * 4 2 1 32 32 H 1.00900 * 110.99961 * 12.46384 * 7 5 4 33 33 H 0.97005 * 120.00156 * 179.97438 * 13 12 10 34 34 H 1.07994 * 120.00153 * 359.97438 * 19 18 8 35 35 H 1.07990 * 119.99994 * 179.72904 * 20 19 18 36 36 H 1.08004 * 120.00361 * 180.20998 * 21 20 19 37 37 H 1.08001 * 120.00176 * 179.78062 * 22 21 20 38 38 H 1.07999 * 120.00112 * 359.97438 * 23 18 8 39 39 H 1.09004 * 109.46772 * 157.49862 * 26 24 2 40 40 H 1.08997 * 109.46889 * 277.49355 * 26 24 2 41 41 H 1.08994 * 109.47295 * 37.49797 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9532 1.0045 0.0000 4 6 2.1461 -0.9301 -1.0583 5 6 2.0929 -2.0425 0.0022 6 1 2.9710 -2.6883 0.0039 7 7 0.8313 -2.7951 0.0030 8 6 1.0791 -4.2377 0.1278 9 1 1.9963 -4.4960 -0.4013 10 6 1.2203 -4.5989 1.5841 11 1 2.1317 -5.0554 1.9412 12 6 0.1863 -4.3465 2.4604 13 7 -0.8494 -3.6370 2.0686 14 14 0.2563 -5.0126 4.2043 15 1 1.5179 -5.7727 4.3936 16 1 0.2099 -3.8834 5.1676 17 1 -0.9030 -5.9107 4.4381 18 6 -0.0765 -4.9992 -0.4688 19 6 -1.3318 -4.4226 -0.5194 20 6 -2.3929 -5.1232 -1.0619 21 6 -2.1965 -6.3966 -1.5625 22 6 -0.9410 -6.9729 -1.5127 23 6 0.1190 -6.2742 -0.9658 24 6 2.1459 -0.9279 1.0604 25 1 3.1590 -0.6484 1.3497 26 6 1.2313 -1.1787 2.2610 27 1 -0.3634 0.3340 0.9719 28 1 -0.3633 0.6747 -0.7753 29 1 -0.3633 -1.0086 -0.1967 30 1 3.1591 -0.6512 -1.3481 31 1 1.4945 -1.1106 -1.9133 32 1 0.2884 -2.5916 -0.8228 33 1 -1.5771 -3.4597 2.6851 34 1 -1.4845 -3.4265 -0.1310 35 1 -3.3745 -4.6744 -1.0974 36 1 -3.0248 -6.9427 -1.9894 37 1 -0.7884 -7.9692 -1.9006 38 1 1.0999 -6.7244 -0.9269 39 1 1.5226 -2.1073 2.7519 40 1 1.3214 -0.3517 2.9653 41 1 0.1986 -1.2557 1.9213 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385669082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:59 Heat of formation + Delta-G solvation = 56.766050 kcal Electronic energy + Delta-G solvation = -20536.683490 eV Core-core repulsion = 17803.353475 eV Total energy + Delta-G solvation = -2733.330016 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.28959 -38.07031 -34.33171 -31.58773 -29.95659 -29.53857 -28.75715 -27.98176 -26.15464 -22.85337 -22.10718 -21.71650 -20.93169 -19.87841 -17.39719 -16.26942 -16.03941 -15.15623 -14.76782 -14.04760 -13.90769 -13.72529 -13.36496 -13.20216 -12.60827 -12.38806 -12.19149 -11.90995 -11.69385 -11.54475 -11.27802 -11.11101 -10.82720 -10.71270 -10.57537 -10.38488 -10.11099 -9.99372 -9.77264 -9.68413 -9.23210 -9.18836 -8.95809 -8.36745 -7.85505 -7.46691 -6.80158 -5.81659 -3.96568 2.43950 2.53067 3.33108 3.42200 3.45576 4.49515 4.91597 5.14076 5.29353 5.31884 5.44764 5.63281 5.77324 5.81939 5.92971 6.00503 6.11546 6.19850 6.26919 6.35109 6.36567 6.52275 6.57676 6.61466 6.69453 6.76126 6.80538 6.91039 6.93417 7.06408 7.11820 7.20512 7.27450 7.44443 7.46369 7.60636 7.90666 7.91106 7.93102 8.14088 8.26479 8.52684 8.84951 9.10958 9.68796 11.13406 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.010021 C = 0.007357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.482513 B = 2793.426607 C = 3805.075249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.102 4.102 3 H 0.052 0.948 4 C -0.162 4.162 5 C 0.091 3.909 6 H 0.050 0.950 7 N -0.618 5.618 8 C 0.249 3.751 9 H 0.000 1.000 10 C -0.513 4.513 11 H 0.051 0.949 12 C 0.098 3.902 13 N -0.827 5.827 14 Si 0.868 3.132 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.287 1.287 18 C -0.037 4.037 19 C -0.069 4.069 20 C -0.143 4.143 21 C -0.152 4.152 22 C -0.141 4.141 23 C -0.130 4.130 24 C -0.099 4.099 25 H 0.063 0.937 26 C -0.121 4.121 27 H 0.053 0.947 28 H 0.032 0.968 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.308 0.692 33 H 0.252 0.748 34 H 0.148 0.852 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.007 0.993 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.675 3.066 -5.635 6.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.121 4.121 3 H 0.070 0.930 4 C -0.201 4.201 5 C -0.021 4.021 6 H 0.068 0.932 7 N -0.250 5.250 8 C 0.142 3.858 9 H 0.018 0.982 10 C -0.551 4.551 11 H 0.069 0.931 12 C -0.109 4.109 13 N -0.460 5.460 14 Si 0.696 3.304 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.213 1.213 18 C -0.038 4.038 19 C -0.088 4.088 20 C -0.161 4.161 21 C -0.171 4.171 22 C -0.160 4.160 23 C -0.149 4.149 24 C -0.119 4.119 25 H 0.081 0.919 26 C -0.178 4.178 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.062 0.938 34 H 0.166 0.834 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.082 0.918 40 H 0.026 0.974 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.373 3.222 -4.903 5.879 hybrid contribution 0.357 -0.713 0.371 0.879 sum 0.730 2.510 -4.532 5.232 Atomic orbital electron populations 1.21704 0.93755 1.03464 1.00181 1.22245 0.96318 0.96333 0.97174 0.92980 1.23556 0.99886 0.99515 0.97155 1.22451 0.93275 0.92695 0.93681 0.93178 1.60899 1.14218 1.07940 1.41906 1.18272 0.88661 0.83720 0.95149 0.98193 1.20757 1.01181 1.41646 0.91483 0.93088 1.24701 0.95586 0.93746 0.96874 1.70017 1.07666 1.34400 1.33966 0.86958 0.77869 0.79006 0.86564 1.20158 1.21117 1.21314 1.20458 0.97182 0.94333 0.91836 1.21390 0.91267 1.01947 0.94187 1.21103 0.98720 0.95322 1.01003 1.20787 0.96445 0.96330 1.03509 1.20789 0.93580 0.98950 1.02656 1.20870 0.98086 0.95512 1.00391 1.22552 0.97608 0.96091 0.95607 0.91890 1.21564 1.02436 0.98826 0.94962 0.92787 0.94904 0.89215 0.91338 0.92253 0.87182 0.93755 0.83422 0.88019 0.88286 0.88094 0.87747 0.91797 0.97378 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.16 37.16 0.30 -1.90 16 2 C -0.10 -1.66 4.47 -89.81 -0.40 -2.06 16 3 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.16 -2.58 7.27 -25.92 -0.19 -2.77 16 5 C 0.09 1.70 4.06 -66.90 -0.27 1.43 16 6 H 0.05 1.01 7.43 -51.93 -0.39 0.62 16 7 N -0.62 -12.57 2.16 -101.32 -0.22 -12.79 16 8 C 0.25 5.63 2.37 -70.01 -0.17 5.46 16 9 H 0.00 0.01 7.50 -51.93 -0.39 -0.38 16 10 C -0.51 -12.93 8.37 -34.44 -0.29 -13.22 16 11 H 0.05 1.34 7.83 -52.48 -0.41 0.93 16 12 C 0.10 2.47 4.00 -17.82 -0.07 2.39 16 13 N -0.83 -20.34 8.88 55.43 0.49 -19.85 16 14 Si 0.87 20.49 29.55 -169.99 -5.02 15.46 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 C -0.04 -0.81 4.57 -104.62 -0.48 -1.29 16 19 C -0.07 -1.48 7.30 -39.58 -0.29 -1.77 16 20 C -0.14 -2.79 10.05 -39.58 -0.40 -3.19 16 21 C -0.15 -2.81 10.05 -39.59 -0.40 -3.21 16 22 C -0.14 -2.66 10.05 -39.58 -0.40 -3.06 16 23 C -0.13 -2.69 9.72 -39.58 -0.38 -3.07 16 24 C -0.10 -1.81 4.30 -89.81 -0.39 -2.20 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 C -0.12 -2.48 8.42 37.16 0.31 -2.16 16 27 H 0.05 0.91 7.04 -51.93 -0.37 0.54 16 28 H 0.03 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.09 1.62 5.05 -51.93 -0.26 1.36 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.92 7.78 -51.93 -0.40 0.51 16 32 H 0.31 6.08 5.48 -39.29 -0.22 5.86 16 33 H 0.25 6.20 8.31 -40.82 -0.34 5.87 16 34 H 0.15 3.29 5.87 -52.49 -0.31 2.98 16 35 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 37 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 38 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 39 H 0.06 1.49 6.61 -51.93 -0.34 1.14 16 40 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 41 H 0.09 1.98 4.97 -51.93 -0.26 1.72 16 LS Contribution 311.89 15.07 4.70 4.70 Total: -1.00 -24.50 311.89 -9.83 -34.34 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.28 Total: 8.73 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: -3.50 Total: -30.60 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.27 Total: -32.63 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -24.50 -9.83 -34.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385669082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.101 kcal (2) G-P(sol) polarization free energy of solvation -24.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds