Wall clock time and date at job start Mon Mar 30 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 112.84637 * 2 1 4 4 C 1.53778 * 113.61865 * 228.68914 * 2 1 3 5 5 C 1.53786 * 87.07984 * 270.88698 * 4 2 1 6 6 H 1.08999 * 113.68924 * 220.00944 * 5 4 2 7 7 N 1.46900 * 113.61587 * 89.11200 * 5 4 2 8 8 C 1.46904 * 110.99355 * 136.41214 * 7 5 4 9 9 H 1.08996 * 109.47466 * 324.99846 * 8 7 5 10 10 C 1.50699 * 109.47266 * 85.00543 * 8 7 5 11 11 H 1.08006 * 119.99478 * 239.13941 * 10 8 7 12 12 C 1.37875 * 120.00172 * 59.13288 * 10 8 7 13 13 N 1.31512 * 120.00050 * 351.14572 * 12 10 8 14 14 Si 1.86803 * 119.99825 * 171.14221 * 12 10 8 15 15 H 1.48498 * 109.47321 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46801 * 120.00456 * 14 12 10 17 17 H 1.48502 * 109.47189 * 240.00324 * 14 12 10 18 18 C 1.50707 * 109.46587 * 205.00233 * 8 7 5 19 19 C 1.38232 * 119.99880 * 333.78048 * 18 8 7 20 20 C 1.38242 * 119.99879 * 180.25952 * 19 18 8 21 21 C 1.38232 * 119.99730 * 359.53044 * 20 19 18 22 22 C 1.38234 * 120.00042 * 0.42819 * 21 20 19 23 23 C 1.38232 * 119.99804 * 153.76530 * 18 8 7 24 24 C 1.53778 * 113.61263 * 131.18890 * 2 1 3 25 25 H 1.09006 * 113.61645 * 203.66654 * 24 2 1 26 26 C 1.53004 * 113.61418 * 334.57067 * 24 2 1 27 27 H 1.09003 * 109.47474 * 288.96820 * 1 2 3 28 28 H 1.09007 * 109.46922 * 48.97061 * 1 2 3 29 29 H 1.08996 * 109.46973 * 168.96586 * 1 2 3 30 30 H 1.08992 * 113.61356 * 156.33830 * 4 2 1 31 31 H 1.09000 * 113.60927 * 25.42901 * 4 2 1 32 32 H 1.00900 * 110.99961 * 12.46384 * 7 5 4 33 33 H 0.97005 * 120.00156 * 179.97438 * 13 12 10 34 34 H 1.07994 * 120.00153 * 359.97438 * 19 18 8 35 35 H 1.07990 * 119.99994 * 179.72904 * 20 19 18 36 36 H 1.08004 * 120.00361 * 180.20998 * 21 20 19 37 37 H 1.08001 * 120.00176 * 179.78062 * 22 21 20 38 38 H 1.07999 * 120.00112 * 359.97438 * 23 18 8 39 39 H 1.09004 * 109.46772 * 157.49862 * 26 24 2 40 40 H 1.08997 * 109.46889 * 277.49355 * 26 24 2 41 41 H 1.08994 * 109.47295 * 37.49797 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9532 1.0045 0.0000 4 6 2.1461 -0.9301 -1.0583 5 6 2.0929 -2.0425 0.0022 6 1 2.9710 -2.6883 0.0039 7 7 0.8313 -2.7951 0.0030 8 6 1.0791 -4.2377 0.1278 9 1 1.9963 -4.4960 -0.4013 10 6 1.2203 -4.5989 1.5841 11 1 2.1317 -5.0554 1.9412 12 6 0.1863 -4.3465 2.4604 13 7 -0.8494 -3.6370 2.0686 14 14 0.2563 -5.0126 4.2043 15 1 1.5179 -5.7727 4.3936 16 1 0.2099 -3.8834 5.1676 17 1 -0.9030 -5.9107 4.4381 18 6 -0.0765 -4.9992 -0.4688 19 6 -1.3318 -4.4226 -0.5194 20 6 -2.3929 -5.1232 -1.0619 21 6 -2.1965 -6.3966 -1.5625 22 6 -0.9410 -6.9729 -1.5127 23 6 0.1190 -6.2742 -0.9658 24 6 2.1459 -0.9279 1.0604 25 1 3.1590 -0.6484 1.3497 26 6 1.2313 -1.1787 2.2610 27 1 -0.3634 0.3340 0.9719 28 1 -0.3633 0.6747 -0.7753 29 1 -0.3633 -1.0086 -0.1967 30 1 3.1591 -0.6512 -1.3481 31 1 1.4945 -1.1106 -1.9133 32 1 0.2884 -2.5916 -0.8228 33 1 -1.5771 -3.4597 2.6851 34 1 -1.4845 -3.4265 -0.1310 35 1 -3.3745 -4.6744 -1.0974 36 1 -3.0248 -6.9427 -1.9894 37 1 -0.7884 -7.9692 -1.9006 38 1 1.0999 -6.7244 -0.9269 39 1 1.5226 -2.1073 2.7519 40 1 1.3214 -0.3517 2.9653 41 1 0.1986 -1.2557 1.9213 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385669082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:58 Heat of formation + Delta-G solvation = 47.740723 kcal Electronic energy + Delta-G solvation = -20537.074858 eV Core-core repulsion = 17803.353475 eV Total energy + Delta-G solvation = -2733.721383 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.76755 -39.60455 -36.01899 -33.43004 -31.50481 -31.06159 -30.30148 -29.39789 -27.96367 -24.54854 -23.56536 -23.25090 -22.41995 -21.53126 -18.87730 -18.08306 -17.52950 -16.71229 -16.61342 -15.61755 -15.52911 -15.25891 -14.80935 -14.71641 -14.38280 -13.89872 -13.73602 -13.52032 -13.33139 -13.05972 -12.88449 -12.69748 -12.58824 -12.41034 -12.11008 -12.05587 -11.78864 -11.59572 -11.34386 -11.22384 -10.96366 -10.71583 -10.44564 -10.25140 -9.41399 -9.08861 -8.44367 -7.73022 -5.92975 0.87013 0.98632 1.39426 1.46249 1.50747 2.54498 3.31155 3.41265 3.73624 3.93133 3.97680 4.18338 4.34424 4.39737 4.43880 4.55611 4.73663 4.79637 4.84297 4.89812 4.99746 5.02508 5.08431 5.11706 5.18194 5.25185 5.28468 5.36212 5.44499 5.51359 5.60790 5.63758 5.81030 5.87939 5.91856 5.92013 6.05216 6.21165 6.28376 6.43097 6.58188 6.75137 7.13874 7.33971 7.72417 9.16650 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.010021 C = 0.007357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.482513 B = 2793.426607 C = 3805.075249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 H 0.074 0.926 4 C -0.144 4.144 5 C 0.076 3.924 6 H 0.030 0.970 7 N -0.615 5.615 8 C 0.254 3.746 9 H -0.016 1.016 10 C -0.530 4.530 11 H 0.026 0.974 12 C 0.080 3.920 13 N -0.823 5.823 14 Si 0.901 3.099 15 H -0.285 1.285 16 H -0.285 1.285 17 H -0.290 1.290 18 C -0.058 4.058 19 C -0.080 4.080 20 C -0.149 4.149 21 C -0.148 4.148 22 C -0.140 4.140 23 C -0.148 4.148 24 C -0.105 4.105 25 H 0.073 0.927 26 C -0.111 4.111 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.312 0.688 33 H 0.249 0.751 34 H 0.134 0.866 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.105 0.895 39 H 0.028 0.972 40 H 0.018 0.982 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.235 3.546 -7.005 7.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.110 4.110 3 H 0.092 0.908 4 C -0.183 4.183 5 C -0.035 4.035 6 H 0.048 0.952 7 N -0.246 5.246 8 C 0.146 3.854 9 H 0.001 0.999 10 C -0.568 4.568 11 H 0.045 0.955 12 C -0.127 4.127 13 N -0.457 5.457 14 Si 0.730 3.270 15 H -0.210 1.210 16 H -0.211 1.211 17 H -0.216 1.216 18 C -0.059 4.059 19 C -0.098 4.098 20 C -0.167 4.167 21 C -0.166 4.166 22 C -0.158 4.158 23 C -0.167 4.167 24 C -0.125 4.125 25 H 0.091 0.909 26 C -0.168 4.168 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.132 0.868 33 H 0.059 0.941 34 H 0.152 0.848 35 H 0.141 0.859 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.123 0.877 39 H 0.047 0.953 40 H 0.037 0.963 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.538 3.711 -6.277 7.312 hybrid contribution 0.642 -0.901 0.780 1.354 sum 0.104 2.810 -5.497 6.175 Atomic orbital electron populations 1.21637 0.93916 1.02736 1.00452 1.22181 0.96097 0.97004 0.95719 0.90782 1.23452 1.01219 0.97186 0.96433 1.22551 0.91859 0.93110 0.96019 0.95204 1.60713 1.15063 1.06674 1.42125 1.18091 0.88652 0.85136 0.93512 0.99853 1.20778 1.00483 1.42232 0.93303 0.95524 1.24921 0.95684 0.94065 0.98038 1.70091 1.07431 1.34275 1.33871 0.86451 0.77070 0.78350 0.85094 1.21033 1.21146 1.21613 1.20442 0.97135 0.95039 0.93290 1.21281 0.91699 1.01698 0.95165 1.21387 0.99071 0.95871 1.00371 1.21191 0.97294 0.95887 1.02207 1.21144 0.93101 1.00041 1.01484 1.21064 0.99090 0.95420 1.01127 1.22624 0.97941 0.96842 0.95054 0.90880 1.21406 1.02102 0.97425 0.95875 0.93651 0.92665 0.91211 0.89291 0.91583 0.86790 0.94125 0.84845 0.85894 0.84828 0.85070 0.87707 0.95273 0.96297 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 8.16 71.98 0.59 -3.47 16 2 C -0.09 -2.77 4.47 -10.27 -0.05 -2.82 16 3 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.14 -4.29 7.27 31.12 0.23 -4.07 16 5 C 0.08 2.87 4.06 45.44 0.18 3.05 16 6 H 0.03 1.24 7.43 -2.39 -0.02 1.22 16 7 N -0.61 -25.46 2.16 -474.46 -1.02 -26.48 16 8 C 0.25 11.86 2.37 43.42 0.10 11.96 16 9 H -0.02 -0.78 7.50 -2.39 -0.02 -0.80 16 10 C -0.53 -27.75 8.37 25.60 0.21 -27.54 16 11 H 0.03 1.48 7.83 -2.91 -0.02 1.45 16 12 C 0.08 4.10 4.00 84.65 0.34 4.44 16 13 N -0.82 -41.11 8.88 21.45 0.19 -40.92 16 14 Si 0.90 42.80 29.55 68.60 2.03 44.83 16 15 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 16 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 17 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 18 C -0.06 -2.57 4.57 -19.86 -0.09 -2.66 16 19 C -0.08 -3.38 7.30 22.27 0.16 -3.21 16 20 C -0.15 -5.50 10.05 22.27 0.22 -5.27 16 21 C -0.15 -4.98 10.05 22.27 0.22 -4.76 16 22 C -0.14 -4.91 10.05 22.27 0.22 -4.69 16 23 C -0.15 -6.08 9.72 22.27 0.22 -5.86 16 24 C -0.11 -3.78 4.30 -10.27 -0.04 -3.83 16 25 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 26 C -0.11 -4.58 8.42 71.98 0.61 -3.98 16 27 H 0.04 1.47 7.04 -2.39 -0.02 1.46 16 28 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.07 2.48 5.05 -2.39 -0.01 2.46 16 30 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.07 1.90 7.78 -2.39 -0.02 1.88 16 32 H 0.31 12.43 5.48 -89.69 -0.49 11.94 16 33 H 0.25 12.35 8.31 -92.70 -0.77 11.58 16 34 H 0.13 5.99 5.87 -2.91 -0.02 5.97 16 35 H 0.12 3.94 8.06 -2.92 -0.02 3.92 16 36 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 38 H 0.10 4.16 8.06 -2.91 -0.02 4.13 16 39 H 0.03 1.37 6.61 -2.38 -0.02 1.36 16 40 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.08 3.45 4.97 -2.39 -0.01 3.44 16 Total: -1.00 -52.96 311.89 4.84 -48.12 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.52 Total: 27.15 kcal Atomic # 6 Polarization: -55.83 SS G_CDS: 3.13 Total: -52.70 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: -0.83 Total: -67.40 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -52.96 4.84 -48.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385669082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.864 kcal (2) G-P(sol) polarization free energy of solvation -52.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds