Wall clock time and date at job start Mon Mar 30 2020 06:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46949 * 2 1 4 4 C 1.52999 * 109.46979 * 119.99651 * 2 1 3 5 5 N 1.46905 * 109.47455 * 295.00008 * 4 2 1 6 6 C 1.46900 * 111.00232 * 169.99958 * 5 4 2 7 7 C 1.50703 * 109.47101 * 285.62744 * 6 5 4 8 8 H 1.08000 * 119.99968 * 4.85013 * 7 6 5 9 9 C 1.37879 * 119.99892 * 184.84874 * 7 6 5 10 10 N 1.31508 * 119.99832 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99841 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47331 * 59.99812 * 11 9 7 13 13 H 1.48500 * 109.46717 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46917 * 299.99719 * 11 9 7 15 15 C 1.46901 * 111.00166 * 293.95981 * 5 4 2 16 16 C 1.52998 * 117.49684 * 246.36111 * 15 5 4 17 17 C 1.52991 * 117.49898 * 177.73656 * 15 5 4 18 18 C 1.50702 * 109.47440 * 239.99798 * 2 1 3 19 19 C 1.38236 * 119.99564 * 299.72693 * 18 2 1 20 20 C 1.38234 * 119.99476 * 179.78997 * 19 18 2 21 21 C 1.38244 * 120.00241 * 0.43766 * 20 19 18 22 22 C 1.38229 * 119.99554 * 359.81291 * 21 20 19 23 23 C 1.38234 * 119.99662 * 119.99917 * 18 2 1 24 24 H 1.09000 * 109.47225 * 299.99985 * 1 2 3 25 25 H 1.08998 * 109.47274 * 60.00796 * 1 2 3 26 26 H 1.09001 * 109.46949 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47124 * 55.00319 * 4 2 1 28 28 H 1.09002 * 109.47014 * 175.00380 * 4 2 1 29 29 H 1.08997 * 109.46763 * 45.62669 * 6 5 4 30 30 H 1.08995 * 109.47148 * 165.62880 * 6 5 4 31 31 H 0.97004 * 120.00128 * 180.02562 * 10 9 7 32 32 H 1.09005 * 115.54865 * 32.05718 * 15 5 4 33 33 H 1.09006 * 117.49774 * 359.97438 * 16 15 5 34 34 H 1.08993 * 117.50294 * 145.02032 * 16 15 5 35 35 H 1.09004 * 117.49649 * 214.97457 * 17 15 5 36 36 H 1.08998 * 117.50318 * 359.96930 * 17 15 5 37 37 H 1.07996 * 120.00373 * 359.97438 * 19 18 2 38 38 H 1.08004 * 120.00023 * 180.27537 * 20 19 18 39 39 H 1.07998 * 120.00066 * 179.83585 * 21 20 19 40 40 H 1.07997 * 120.00001 * 179.97438 * 22 21 20 41 41 H 1.07990 * 120.00504 * 359.97438 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6513 0.0375 2.4457 6 6 1.9123 -0.7356 3.6672 7 6 0.8785 -1.8235 3.8037 8 1 0.1527 -1.9802 3.0194 9 6 0.8592 -2.6189 4.9298 10 7 1.7434 -2.4284 5.8845 11 14 -0.4218 -3.9679 5.0986 12 1 -0.2744 -4.9334 3.9800 13 1 -0.2291 -4.6746 6.3904 14 1 -1.7799 -3.3686 5.0595 15 6 2.3339 1.3376 2.4895 16 6 3.3502 1.5644 3.6104 17 6 1.9955 2.2744 3.6507 18 6 2.0324 -0.7104 -1.2304 19 6 1.7031 -2.0356 -1.4462 20 6 2.1603 -2.6860 -2.5770 21 6 2.9544 -2.0139 -3.4875 22 6 3.2879 -0.6904 -3.2690 23 6 2.8271 -0.0386 -2.1403 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6053 -1.7197 1.2952 28 1 3.1263 -0.7993 1.2057 29 1 2.9047 -1.1826 3.6091 30 1 1.8614 -0.0753 4.5329 31 1 1.7301 -2.9882 6.6766 32 1 2.5428 1.7917 1.5208 33 1 3.5121 0.7491 4.3156 34 1 4.2280 2.1678 3.3794 35 1 1.9822 3.3450 3.4462 36 1 1.2661 1.9264 4.3820 37 1 1.0862 -2.5618 -0.7329 38 1 1.8994 -3.7200 -2.7479 39 1 3.3138 -2.5228 -4.3696 40 1 3.9085 -0.1654 -3.9800 41 1 3.0876 0.9954 -1.9697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395102195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:12 Heat of formation + Delta-G solvation = 47.784457 kcal Electronic energy + Delta-G solvation = -19358.003013 eV Core-core repulsion = 16624.283526 eV Total energy + Delta-G solvation = -2733.719487 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.44271 -38.06370 -34.97527 -33.13939 -31.63908 -30.78040 -29.09837 -27.05233 -24.98480 -22.98883 -22.74674 -22.14276 -21.65472 -20.07427 -18.49676 -16.75618 -16.61501 -15.55838 -15.14290 -14.85569 -14.67137 -14.20904 -13.71265 -13.46965 -13.22233 -13.01564 -12.41983 -12.34025 -12.15210 -11.81909 -11.50281 -11.41577 -11.06516 -11.00820 -10.87070 -10.71627 -10.60725 -10.33390 -10.23671 -10.01253 -9.78297 -9.54276 -9.11956 -8.79433 -8.52375 -8.39275 -7.08112 -6.01631 -4.02660 1.50424 1.52789 3.33584 3.37871 3.40565 3.92426 4.37526 4.47490 4.80727 4.95611 5.05838 5.13616 5.26913 5.34178 5.36397 5.51770 5.60410 5.63590 5.64901 5.71145 5.80587 5.85666 6.11950 6.15454 6.20260 6.26759 6.32538 6.37422 6.46358 6.57691 6.60505 6.64342 6.66850 6.81261 6.81536 6.95840 7.14800 7.28881 7.33688 7.81988 8.12290 8.22076 8.55209 9.04339 9.61117 11.08963 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016471 B = 0.006196 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.516687 B = 4518.009325 C = 5689.662642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.052 4.052 3 H 0.072 0.928 4 C 0.076 3.924 5 N -0.500 5.500 6 C 0.190 3.810 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.896 3.104 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.024 3.976 16 C -0.227 4.227 17 C -0.175 4.175 18 C -0.064 4.064 19 C -0.111 4.111 20 C -0.120 4.120 21 C -0.133 4.133 22 C -0.123 4.123 23 C -0.121 4.121 24 H 0.075 0.925 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.022 0.978 29 H -0.010 1.010 30 H 0.040 0.960 31 H 0.261 0.739 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 4.793 -14.691 15.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.071 4.071 3 H 0.090 0.910 4 C -0.053 4.053 5 N -0.222 5.222 6 C 0.065 3.935 7 C -0.544 4.544 8 H 0.080 0.920 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.086 4.086 16 C -0.266 4.266 17 C -0.213 4.213 18 C -0.064 4.064 19 C -0.129 4.129 20 C -0.138 4.138 21 C -0.151 4.151 22 C -0.141 4.141 23 C -0.140 4.140 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.040 0.960 29 H 0.008 0.992 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.143 0.857 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.477 4.778 -14.531 15.367 hybrid contribution 0.345 -0.899 0.293 1.006 sum 1.823 3.880 -14.237 14.869 Atomic orbital electron populations 1.21684 0.93632 1.01982 1.01443 1.20277 0.96933 0.98544 0.91316 0.91018 1.21994 0.96867 0.97915 0.88477 1.61990 1.54191 1.01953 1.04064 1.19844 0.95180 0.92327 0.86156 1.21121 1.14796 1.14624 1.03815 0.91983 1.24964 0.96052 0.97754 0.95755 1.69939 1.35506 1.39975 1.08455 0.86591 0.82002 0.81850 0.77153 1.20334 1.21401 1.20169 1.22664 0.98767 0.94303 0.92862 1.23570 0.92892 1.04484 1.05641 1.22969 0.98958 0.96751 1.02603 1.20046 0.96242 0.94240 0.95918 1.21139 0.99963 0.94438 0.97356 1.21146 0.98177 0.99753 0.94693 1.21065 0.99526 0.94966 0.99573 1.21067 1.00354 0.95014 0.97662 1.21065 0.98439 0.99811 0.94637 0.90622 0.94166 0.92875 0.89789 0.96022 0.99175 0.94228 0.92905 0.87854 0.87550 0.90245 0.89743 0.88379 0.85671 0.86349 0.86631 0.86566 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.90 37.16 0.33 -1.66 16 2 C -0.05 -0.80 2.51 -91.77 -0.23 -1.03 16 3 H 0.07 1.05 6.00 -51.93 -0.31 0.74 16 4 C 0.08 1.43 3.91 -3.82 -0.01 1.42 16 5 N -0.50 -10.48 4.10 -228.08 -0.94 -11.42 16 6 C 0.19 4.83 3.38 -4.97 -0.02 4.81 16 7 C -0.50 -13.95 8.58 -34.44 -0.30 -14.24 16 8 H 0.06 1.69 7.57 -52.49 -0.40 1.29 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 11 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.02 0.44 5.82 -67.72 -0.39 0.05 16 16 C -0.23 -4.09 9.56 -26.73 -0.26 -4.35 16 17 C -0.17 -3.04 9.91 -26.74 -0.27 -3.30 16 18 C -0.06 -0.92 4.78 -104.62 -0.50 -1.42 16 19 C -0.11 -1.58 8.76 -39.58 -0.35 -1.92 16 20 C -0.12 -1.50 10.05 -39.58 -0.40 -1.89 16 21 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 22 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 23 C -0.12 -1.56 9.67 -39.58 -0.38 -1.95 16 24 H 0.07 1.27 7.75 -51.93 -0.40 0.87 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.82 7.40 -51.93 -0.38 0.44 16 27 H 0.08 1.74 6.62 -51.93 -0.34 1.39 16 28 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 29 H -0.01 -0.26 7.83 -51.93 -0.41 -0.67 16 30 H 0.04 1.08 5.63 -51.93 -0.29 0.79 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.10 1.65 6.30 -51.93 -0.33 1.32 16 33 H 0.11 2.24 6.02 -51.93 -0.31 1.93 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.10 1.91 7.48 -51.93 -0.39 1.53 16 37 H 0.13 1.80 7.16 -52.49 -0.38 1.42 16 38 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.33 7.95 -52.49 -0.42 0.91 16 LS Contribution 328.37 15.07 4.95 4.95 Total: -1.00 -29.11 328.37 -10.39 -39.50 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.45 Total: 3.99 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -3.66 Total: -27.78 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.20 Total: -37.20 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.11 -10.39 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395102195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.284 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds