Wall clock time and date at job start Mon Mar 30 2020 06:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46949 * 2 1 4 4 C 1.52999 * 109.46979 * 119.99651 * 2 1 3 5 5 N 1.46905 * 109.47455 * 295.00008 * 4 2 1 6 6 C 1.46900 * 111.00232 * 169.99958 * 5 4 2 7 7 C 1.50703 * 109.47101 * 285.62744 * 6 5 4 8 8 H 1.08000 * 119.99968 * 4.85013 * 7 6 5 9 9 C 1.37879 * 119.99892 * 184.84874 * 7 6 5 10 10 N 1.31508 * 119.99832 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99841 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47331 * 59.99812 * 11 9 7 13 13 H 1.48500 * 109.46717 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46917 * 299.99719 * 11 9 7 15 15 C 1.46901 * 111.00166 * 293.95981 * 5 4 2 16 16 C 1.52998 * 117.49684 * 246.36111 * 15 5 4 17 17 C 1.52991 * 117.49898 * 177.73656 * 15 5 4 18 18 C 1.50702 * 109.47440 * 239.99798 * 2 1 3 19 19 C 1.38236 * 119.99564 * 299.72693 * 18 2 1 20 20 C 1.38234 * 119.99476 * 179.78997 * 19 18 2 21 21 C 1.38244 * 120.00241 * 0.43766 * 20 19 18 22 22 C 1.38229 * 119.99554 * 359.81291 * 21 20 19 23 23 C 1.38234 * 119.99662 * 119.99917 * 18 2 1 24 24 H 1.09000 * 109.47225 * 299.99985 * 1 2 3 25 25 H 1.08998 * 109.47274 * 60.00796 * 1 2 3 26 26 H 1.09001 * 109.46949 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47124 * 55.00319 * 4 2 1 28 28 H 1.09002 * 109.47014 * 175.00380 * 4 2 1 29 29 H 1.08997 * 109.46763 * 45.62669 * 6 5 4 30 30 H 1.08995 * 109.47148 * 165.62880 * 6 5 4 31 31 H 0.97004 * 120.00128 * 180.02562 * 10 9 7 32 32 H 1.09005 * 115.54865 * 32.05718 * 15 5 4 33 33 H 1.09006 * 117.49774 * 359.97438 * 16 15 5 34 34 H 1.08993 * 117.50294 * 145.02032 * 16 15 5 35 35 H 1.09004 * 117.49649 * 214.97457 * 17 15 5 36 36 H 1.08998 * 117.50318 * 359.96930 * 17 15 5 37 37 H 1.07996 * 120.00373 * 359.97438 * 19 18 2 38 38 H 1.08004 * 120.00023 * 180.27537 * 20 19 18 39 39 H 1.07998 * 120.00066 * 179.83585 * 21 20 19 40 40 H 1.07997 * 120.00001 * 179.97438 * 22 21 20 41 41 H 1.07990 * 120.00504 * 359.97438 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6513 0.0375 2.4457 6 6 1.9123 -0.7356 3.6672 7 6 0.8785 -1.8235 3.8037 8 1 0.1527 -1.9802 3.0194 9 6 0.8592 -2.6189 4.9298 10 7 1.7434 -2.4284 5.8845 11 14 -0.4218 -3.9679 5.0986 12 1 -0.2744 -4.9334 3.9800 13 1 -0.2291 -4.6746 6.3904 14 1 -1.7799 -3.3686 5.0595 15 6 2.3339 1.3376 2.4895 16 6 3.3502 1.5644 3.6104 17 6 1.9955 2.2744 3.6507 18 6 2.0324 -0.7104 -1.2304 19 6 1.7031 -2.0356 -1.4462 20 6 2.1603 -2.6860 -2.5770 21 6 2.9544 -2.0139 -3.4875 22 6 3.2879 -0.6904 -3.2690 23 6 2.8271 -0.0386 -2.1403 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6053 -1.7197 1.2952 28 1 3.1263 -0.7993 1.2057 29 1 2.9047 -1.1826 3.6091 30 1 1.8614 -0.0753 4.5329 31 1 1.7301 -2.9882 6.6766 32 1 2.5428 1.7917 1.5208 33 1 3.5121 0.7491 4.3156 34 1 4.2280 2.1678 3.3794 35 1 1.9822 3.3450 3.4462 36 1 1.2661 1.9264 4.3820 37 1 1.0862 -2.5618 -0.7329 38 1 1.8994 -3.7200 -2.7479 39 1 3.3138 -2.5228 -4.3696 40 1 3.9085 -0.1654 -3.9800 41 1 3.0876 0.9954 -1.9697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395102195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:11 Heat of formation + Delta-G solvation = 32.939227 kcal Electronic energy + Delta-G solvation = -19358.646751 eV Core-core repulsion = 16624.283526 eV Total energy + Delta-G solvation = -2734.363224 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.58787 -39.50758 -36.25751 -35.13241 -33.32264 -31.73223 -30.30412 -28.92638 -26.56850 -24.60423 -24.12118 -23.21450 -23.10003 -21.38209 -20.02546 -18.65136 -17.78084 -17.06085 -16.70551 -16.34426 -16.00379 -15.68583 -15.03422 -14.72053 -14.47022 -14.24640 -14.06414 -13.89294 -13.54063 -13.23101 -13.08837 -12.85568 -12.76967 -12.59723 -12.36683 -12.20927 -12.08482 -11.88499 -11.66909 -11.52773 -11.35130 -11.09933 -11.01708 -10.59234 -9.75389 -9.53156 -8.80704 -8.19619 -6.29429 0.52160 0.56548 1.38919 1.41874 1.49678 2.38990 2.88186 2.97236 3.12062 3.36153 3.81833 3.95812 4.04684 4.12937 4.21097 4.22181 4.25866 4.35370 4.42183 4.57946 4.68590 4.71877 4.76257 4.80264 4.91937 4.94638 5.10714 5.11574 5.16410 5.23246 5.25412 5.30154 5.33833 5.34304 5.50097 5.65708 5.66150 5.68969 5.85427 6.08254 6.19807 6.38853 6.66177 6.86198 7.39617 8.90540 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016471 B = 0.006196 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.516687 B = 4518.009325 C = 5689.662642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.037 4.037 3 H 0.086 0.914 4 C 0.083 3.917 5 N -0.506 5.506 6 C 0.211 3.789 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.003 3.997 10 N -0.934 5.934 11 Si 0.964 3.036 12 H -0.269 1.269 13 H -0.283 1.283 14 H -0.268 1.268 15 C 0.015 3.985 16 C -0.228 4.228 17 C -0.164 4.164 18 C -0.082 4.082 19 C -0.132 4.132 20 C -0.128 4.128 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.127 4.127 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.010 0.990 29 H -0.044 1.044 30 H 0.015 0.985 31 H 0.263 0.737 32 H 0.137 0.863 33 H 0.065 0.935 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.134 0.866 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.948 5.657 -17.206 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.056 4.056 3 H 0.104 0.896 4 C -0.045 4.045 5 N -0.227 5.227 6 C 0.085 3.915 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.195 4.195 10 N -0.575 5.575 11 Si 0.789 3.211 12 H -0.194 1.194 13 H -0.208 1.208 14 H -0.193 1.193 15 C -0.094 4.094 16 C -0.268 4.268 17 C -0.202 4.202 18 C -0.083 4.083 19 C -0.150 4.150 20 C -0.146 4.146 21 C -0.150 4.150 22 C -0.141 4.141 23 C -0.145 4.145 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.029 0.971 29 H -0.027 1.027 30 H 0.034 0.966 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.084 0.916 34 H 0.130 0.870 35 H 0.143 0.857 36 H 0.087 0.913 37 H 0.128 0.872 38 H 0.152 0.848 39 H 0.162 0.838 40 H 0.164 0.836 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.476 5.653 -17.062 18.035 hybrid contribution 0.405 -1.160 1.027 1.602 sum 1.881 4.494 -16.035 16.758 Atomic orbital electron populations 1.21612 0.93680 1.01347 1.01547 1.20103 0.96798 0.98751 0.89932 0.89573 1.21922 0.95993 0.97135 0.89421 1.61902 1.55143 1.02804 1.02896 1.19406 0.92805 0.91725 0.87593 1.21448 1.15107 1.15442 1.03898 0.92163 1.25859 0.98129 1.00159 0.95337 1.70075 1.37264 1.41136 1.09014 0.85511 0.79357 0.78832 0.77397 1.19384 1.20830 1.19293 1.22915 0.98880 0.93032 0.94616 1.23487 0.94580 1.04021 1.04663 1.23007 0.97389 0.98660 1.01110 1.19973 0.97799 0.94456 0.96076 1.21177 1.00858 0.94861 0.98152 1.21390 0.98253 1.00653 0.94305 1.21452 0.98391 0.95160 0.99957 1.21450 0.99902 0.95147 0.97553 1.21307 0.97807 1.00717 0.94644 0.92414 0.91949 0.93957 0.92513 0.97131 1.02663 0.96647 0.92781 0.84557 0.91590 0.86980 0.85709 0.91318 0.87242 0.84842 0.83828 0.83639 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.76 8.90 71.98 0.64 -3.12 16 2 C -0.04 -1.12 2.51 -11.54 -0.03 -1.15 16 3 H 0.09 2.33 6.00 -2.39 -0.01 2.32 16 4 C 0.08 3.25 3.91 86.30 0.34 3.59 16 5 N -0.51 -21.88 4.10 -875.53 -3.59 -25.47 16 6 C 0.21 11.37 3.38 85.56 0.29 11.66 16 7 C -0.52 -29.98 8.58 25.60 0.22 -29.76 16 8 H 0.06 3.41 7.57 -2.91 -0.02 3.39 16 9 C 0.00 0.18 5.46 84.66 0.46 0.64 16 10 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 11 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 15 C 0.02 0.54 5.82 44.91 0.26 0.80 16 16 C -0.23 -8.25 9.56 30.59 0.29 -7.96 16 17 C -0.16 -5.57 9.91 30.59 0.30 -5.26 16 18 C -0.08 -2.29 4.78 -19.87 -0.09 -2.39 16 19 C -0.13 -3.75 8.76 22.27 0.20 -3.56 16 20 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 21 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 22 C -0.12 -2.43 10.05 22.27 0.22 -2.21 16 23 C -0.13 -2.93 9.67 22.27 0.22 -2.72 16 24 H 0.06 1.93 7.75 -2.39 -0.02 1.92 16 25 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.04 1.34 7.40 -2.39 -0.02 1.32 16 27 H 0.06 2.49 6.62 -2.39 -0.02 2.48 16 28 H 0.01 0.43 8.12 -2.39 -0.02 0.41 16 29 H -0.04 -2.64 7.83 -2.39 -0.02 -2.65 16 30 H 0.02 0.90 5.63 -2.39 -0.01 0.89 16 31 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 32 H 0.14 3.98 6.30 -2.38 -0.02 3.96 16 33 H 0.07 2.94 6.02 -2.38 -0.01 2.93 16 34 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 35 H 0.12 3.24 8.14 -2.38 -0.02 3.22 16 36 H 0.07 2.75 7.48 -2.39 -0.02 2.73 16 37 H 0.11 3.33 7.16 -2.91 -0.02 3.31 16 38 H 0.13 2.62 8.06 -2.91 -0.02 2.59 16 39 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.13 2.58 7.95 -2.92 -0.02 2.55 16 Total: -1.00 -65.69 328.37 3.47 -62.22 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.99 Total: 19.66 kcal Atomic # 6 Polarization: -50.43 SS G_CDS: 3.76 Total: -46.66 kcal Atomic # 7 Polarization: -78.99 SS G_CDS: -3.31 Total: -82.29 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -65.69 3.47 -62.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395102195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.157 kcal (2) G-P(sol) polarization free energy of solvation -65.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds