Wall clock time and date at job start Mon Mar 30 2020 06:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47449 * 2 1 4 4 C 1.53007 * 109.47000 * 119.99699 * 2 1 3 5 5 N 1.46894 * 109.46998 * 295.00063 * 4 2 1 6 6 C 1.48561 * 110.99969 * 290.12284 * 5 4 2 7 7 C 1.54385 * 104.59551 * 200.96133 * 6 5 4 8 8 C 1.54265 * 105.05914 * 23.85405 * 7 6 5 9 9 H 1.08999 * 110.32392 * 241.00075 * 8 7 6 10 10 C 1.50695 * 110.32421 * 118.89357 * 8 7 6 11 11 H 1.07999 * 120.00538 * 241.45097 * 10 8 7 12 12 C 1.37881 * 119.99661 * 61.45445 * 10 8 7 13 13 N 1.31520 * 120.00186 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00030 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 10 18 18 C 1.48563 * 111.00105 * 174.70805 * 5 4 2 19 19 C 1.50698 * 109.47108 * 239.99661 * 2 1 3 20 20 C 1.38237 * 120.00145 * 299.72619 * 19 2 1 21 21 C 1.38235 * 120.00090 * 179.74665 * 20 19 2 22 22 C 1.38237 * 119.99684 * 0.54670 * 21 20 19 23 23 C 1.38231 * 120.00100 * 359.71430 * 22 21 20 24 24 C 1.38233 * 120.00194 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.47134 * 300.00156 * 1 2 3 26 26 H 1.09004 * 109.46585 * 60.00055 * 1 2 3 27 27 H 1.08998 * 109.47449 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47049 * 174.99876 * 4 2 1 29 29 H 1.09004 * 109.46573 * 55.00034 * 4 2 1 30 30 H 1.08997 * 110.40963 * 82.18802 * 6 5 4 31 31 H 1.08995 * 110.41301 * 319.73745 * 6 5 4 32 32 H 1.09004 * 110.32210 * 264.96035 * 7 6 5 33 33 H 1.08996 * 110.32706 * 142.75053 * 7 6 5 34 34 H 0.97001 * 119.99697 * 359.97438 * 13 12 10 35 35 H 1.09003 * 110.41243 * 40.25544 * 18 5 4 36 36 H 1.09005 * 110.40699 * 277.82163 * 18 5 4 37 37 H 1.07997 * 120.00009 * 0.02562 * 20 19 2 38 38 H 1.07998 * 120.00231 * 180.27611 * 21 20 19 39 39 H 1.07999 * 119.99936 * 179.72506 * 22 21 20 40 40 H 1.08007 * 120.00084 * 179.97438 * 23 22 21 41 41 H 1.07998 * 120.00265 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6513 0.0375 2.4456 6 6 2.4099 1.3115 2.5378 7 6 2.3212 1.7103 4.0266 8 6 2.0637 0.3894 4.7807 9 1 1.1120 0.4349 5.3100 10 6 3.1861 0.1109 5.7469 11 1 3.7874 -0.7791 5.6343 12 6 3.4455 0.9925 6.7748 13 7 2.7136 2.0766 6.9118 14 14 4.8363 0.6471 7.9730 15 1 6.0908 1.2579 7.4647 16 1 5.0199 -0.8203 8.1087 17 1 4.5041 1.2289 9.2983 18 6 2.0186 -0.6963 3.6841 19 6 2.0323 -0.7105 -1.2304 20 6 1.7031 -2.0356 -1.4463 21 6 2.1595 -2.6858 -2.5775 22 6 2.9546 -2.0141 -3.4873 23 6 3.2883 -0.6906 -3.2687 24 6 2.8274 -0.0388 -2.1402 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1262 -0.7995 1.2057 29 1 1.6053 -1.7198 1.2952 30 1 1.9482 2.0749 1.9117 31 1 3.4489 1.1572 2.2469 32 1 1.4949 2.4035 4.1843 33 1 3.2593 2.1572 4.3554 34 1 1.9916 2.2562 6.2894 35 1 2.9964 -1.1649 3.5725 36 1 1.2622 -1.4447 3.9209 37 1 1.0855 -2.5616 -0.7333 38 1 1.8986 -3.7197 -2.7484 39 1 3.3149 -2.5233 -4.3689 40 1 3.9098 -0.1659 -3.9793 41 1 3.0885 0.9951 -1.9692 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397566001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:26 Heat of formation + Delta-G solvation = 9.006618 kcal Electronic energy + Delta-G solvation = -19109.028829 eV Core-core repulsion = 16373.627809 eV Total energy + Delta-G solvation = -2735.401020 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.66036 -38.17719 -35.17287 -32.98831 -30.99470 -30.20699 -28.87552 -28.18354 -25.51463 -23.87350 -23.16886 -22.42665 -20.68607 -19.85351 -19.17923 -16.92535 -16.79371 -15.57935 -15.42256 -14.86203 -14.42823 -14.00572 -13.83591 -13.70895 -13.41139 -13.12048 -13.02470 -12.64732 -12.11697 -11.89117 -11.63608 -11.54763 -11.30324 -11.05795 -10.88512 -10.79242 -10.43811 -10.41671 -10.30418 -10.10550 -9.87857 -9.45196 -8.99830 -8.73635 -8.45562 -8.30159 -7.88093 -6.32637 -4.04781 1.29439 1.32253 3.43386 3.46726 3.62535 3.71276 4.44423 4.56293 4.73275 4.87348 4.94894 5.06029 5.09901 5.34477 5.39918 5.43742 5.48314 5.52718 5.70573 5.74948 5.88925 5.94548 5.98732 6.02270 6.11766 6.17099 6.23422 6.29272 6.35862 6.41601 6.42170 6.51092 6.66547 6.73253 6.91670 6.93500 6.97352 7.32137 7.46658 7.61323 7.72341 8.28766 8.44462 8.90641 9.67548 11.06319 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035619 B = 0.003952 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.911334 B = 7082.525420 C = 7287.472802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.049 4.049 3 H 0.077 0.923 4 C 0.055 3.945 5 N -0.513 5.513 6 C 0.037 3.963 7 C -0.113 4.113 8 C 0.033 3.967 9 H 0.024 0.976 10 C -0.596 4.596 11 H 0.048 0.952 12 C 0.019 3.981 13 N -0.912 5.912 14 Si 1.069 2.931 15 H -0.289 1.289 16 H -0.289 1.289 17 H -0.284 1.284 18 C 0.048 3.952 19 C -0.068 4.068 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.131 4.131 23 C -0.120 4.120 24 C -0.119 4.119 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.031 0.969 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.274 0.726 35 H 0.036 0.964 36 H 0.060 0.940 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.363 -5.654 -18.617 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.068 4.068 3 H 0.095 0.905 4 C -0.074 4.074 5 N -0.237 5.237 6 C -0.091 4.091 7 C -0.152 4.152 8 C 0.014 3.986 9 H 0.042 0.958 10 C -0.634 4.634 11 H 0.066 0.934 12 C -0.185 4.185 13 N -0.548 5.548 14 Si 0.898 3.102 15 H -0.216 1.216 16 H -0.216 1.216 17 H -0.210 1.210 18 C -0.079 4.079 19 C -0.068 4.068 20 C -0.132 4.132 21 C -0.138 4.138 22 C -0.149 4.149 23 C -0.138 4.138 24 C -0.137 4.137 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.172 -4.982 -17.309 18.050 hybrid contribution 0.227 -0.822 -1.461 1.691 sum -0.945 -5.803 -18.770 19.669 Atomic orbital electron populations 1.21706 0.93605 1.01731 1.01870 1.20158 0.96829 0.99000 0.90790 0.90496 1.22245 0.97686 0.97215 0.90245 1.65363 1.52465 1.04339 1.01535 1.23093 0.95049 0.92057 0.98911 1.22509 1.00933 0.99647 0.92091 1.19517 0.97308 0.89666 0.92083 0.95792 1.22050 1.17208 1.10140 1.14042 0.93415 1.25759 1.01189 0.93440 0.98129 1.70743 1.19488 1.25650 1.38943 0.83545 0.75177 0.75301 0.76224 1.21577 1.21569 1.21001 1.23143 0.97777 0.97387 0.89615 1.20005 0.96608 0.94228 0.96003 1.21050 1.00242 0.94399 0.97525 1.21136 0.98226 0.99779 0.94674 1.21101 0.99246 0.94953 0.99575 1.21119 1.00107 0.94993 0.97605 1.21114 0.98045 1.00006 0.94501 0.90786 0.93599 0.93058 0.95086 0.91308 0.91928 0.94888 0.93764 0.91421 0.91500 0.94578 0.92135 0.86049 0.86281 0.86429 0.86303 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.90 37.16 0.33 -1.35 16 2 C -0.05 -0.66 2.57 -91.77 -0.24 -0.89 16 3 H 0.08 1.06 6.78 -51.93 -0.35 0.71 16 4 C 0.05 0.86 3.93 -3.82 -0.02 0.85 16 5 N -0.51 -9.60 4.82 -229.97 -1.11 -10.71 16 6 C 0.04 0.71 5.74 -2.18 -0.01 0.70 16 7 C -0.11 -2.63 5.03 -25.34 -0.13 -2.76 16 8 C 0.03 0.84 2.65 -90.39 -0.24 0.60 16 9 H 0.02 0.65 8.04 -51.93 -0.42 0.23 16 10 C -0.60 -16.67 8.37 -34.44 -0.29 -16.96 16 11 H 0.05 1.34 7.58 -52.49 -0.40 0.94 16 12 C 0.02 0.55 5.09 -17.82 -0.09 0.46 16 13 N -0.91 -27.24 13.27 55.43 0.74 -26.50 16 14 Si 1.07 25.18 29.90 -169.99 -5.08 20.10 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 C 0.05 1.03 6.01 -2.18 -0.01 1.02 16 19 C -0.07 -0.85 4.78 -104.62 -0.50 -1.35 16 20 C -0.11 -1.33 8.76 -39.58 -0.35 -1.67 16 21 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 22 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 23 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 24 C -0.12 -1.38 9.67 -39.58 -0.38 -1.76 16 25 H 0.07 1.05 7.75 -51.93 -0.40 0.65 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.62 7.40 -51.93 -0.38 0.23 16 28 H 0.03 0.52 7.88 -51.93 -0.41 0.11 16 29 H 0.07 1.03 7.55 -51.93 -0.39 0.64 16 30 H 0.06 1.09 7.64 -51.93 -0.40 0.70 16 31 H 0.03 0.64 7.82 -51.93 -0.41 0.24 16 32 H 0.04 1.01 7.92 -51.93 -0.41 0.60 16 33 H 0.07 1.74 7.23 -51.93 -0.38 1.36 16 34 H 0.27 8.09 6.00 -40.82 -0.24 7.84 16 35 H 0.04 0.80 7.56 -51.93 -0.39 0.41 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.12 1.32 7.16 -52.49 -0.38 0.94 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 41 H 0.12 1.26 7.95 -52.49 -0.42 0.84 16 LS Contribution 323.69 15.07 4.88 4.88 Total: -1.00 -29.58 323.69 -10.38 -39.96 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.69 Total: 0.36 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -3.11 Total: -28.09 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.37 Total: -37.21 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.08 Total: 20.10 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.58 -10.38 -39.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397566001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.971 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds