Wall clock time and date at job start Mon Mar 30 2020 06:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47449 * 2 1 4 4 C 1.53007 * 109.47000 * 119.99699 * 2 1 3 5 5 N 1.46894 * 109.46998 * 295.00063 * 4 2 1 6 6 C 1.48561 * 110.99969 * 290.12284 * 5 4 2 7 7 C 1.54385 * 104.59551 * 200.96133 * 6 5 4 8 8 C 1.54265 * 105.05914 * 23.85405 * 7 6 5 9 9 H 1.08999 * 110.32392 * 241.00075 * 8 7 6 10 10 C 1.50695 * 110.32421 * 118.89357 * 8 7 6 11 11 H 1.07999 * 120.00538 * 241.45097 * 10 8 7 12 12 C 1.37881 * 119.99661 * 61.45445 * 10 8 7 13 13 N 1.31520 * 120.00186 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00030 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 10 18 18 C 1.48563 * 111.00105 * 174.70805 * 5 4 2 19 19 C 1.50698 * 109.47108 * 239.99661 * 2 1 3 20 20 C 1.38237 * 120.00145 * 299.72619 * 19 2 1 21 21 C 1.38235 * 120.00090 * 179.74665 * 20 19 2 22 22 C 1.38237 * 119.99684 * 0.54670 * 21 20 19 23 23 C 1.38231 * 120.00100 * 359.71430 * 22 21 20 24 24 C 1.38233 * 120.00194 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.47134 * 300.00156 * 1 2 3 26 26 H 1.09004 * 109.46585 * 60.00055 * 1 2 3 27 27 H 1.08998 * 109.47449 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47049 * 174.99876 * 4 2 1 29 29 H 1.09004 * 109.46573 * 55.00034 * 4 2 1 30 30 H 1.08997 * 110.40963 * 82.18802 * 6 5 4 31 31 H 1.08995 * 110.41301 * 319.73745 * 6 5 4 32 32 H 1.09004 * 110.32210 * 264.96035 * 7 6 5 33 33 H 1.08996 * 110.32706 * 142.75053 * 7 6 5 34 34 H 0.97001 * 119.99697 * 359.97438 * 13 12 10 35 35 H 1.09003 * 110.41243 * 40.25544 * 18 5 4 36 36 H 1.09005 * 110.40699 * 277.82163 * 18 5 4 37 37 H 1.07997 * 120.00009 * 0.02562 * 20 19 2 38 38 H 1.07998 * 120.00231 * 180.27611 * 21 20 19 39 39 H 1.07999 * 119.99936 * 179.72506 * 22 21 20 40 40 H 1.08007 * 120.00084 * 179.97438 * 23 22 21 41 41 H 1.07998 * 120.00265 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6513 0.0375 2.4456 6 6 2.4099 1.3115 2.5378 7 6 2.3212 1.7103 4.0266 8 6 2.0637 0.3894 4.7807 9 1 1.1120 0.4349 5.3100 10 6 3.1861 0.1109 5.7469 11 1 3.7874 -0.7791 5.6343 12 6 3.4455 0.9925 6.7748 13 7 2.7136 2.0766 6.9118 14 14 4.8363 0.6471 7.9730 15 1 6.0908 1.2579 7.4647 16 1 5.0199 -0.8203 8.1087 17 1 4.5041 1.2289 9.2983 18 6 2.0186 -0.6963 3.6841 19 6 2.0323 -0.7105 -1.2304 20 6 1.7031 -2.0356 -1.4463 21 6 2.1595 -2.6858 -2.5775 22 6 2.9546 -2.0141 -3.4873 23 6 3.2883 -0.6906 -3.2687 24 6 2.8274 -0.0388 -2.1402 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1262 -0.7995 1.2057 29 1 1.6053 -1.7198 1.2952 30 1 1.9482 2.0749 1.9117 31 1 3.4489 1.1572 2.2469 32 1 1.4949 2.4035 4.1843 33 1 3.2593 2.1572 4.3554 34 1 1.9916 2.2562 6.2894 35 1 2.9964 -1.1649 3.5725 36 1 1.2622 -1.4447 3.9209 37 1 1.0855 -2.5616 -0.7333 38 1 1.8986 -3.7197 -2.7484 39 1 3.3149 -2.5233 -4.3689 40 1 3.9098 -0.1659 -3.9793 41 1 3.0885 0.9951 -1.9692 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397566001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:25 Heat of formation + Delta-G solvation = -6.352686 kcal Electronic energy + Delta-G solvation = -19109.694858 eV Core-core repulsion = 16373.627809 eV Total energy + Delta-G solvation = -2736.067050 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.66944 -39.66144 -36.53447 -34.77393 -31.82672 -31.69762 -30.09734 -29.89193 -26.97309 -25.79253 -24.20700 -23.32288 -22.07869 -21.61967 -20.54812 -18.86258 -17.78475 -16.95673 -16.60910 -15.97798 -15.87647 -15.63705 -15.24042 -15.15042 -14.52993 -14.33548 -14.09150 -13.96388 -13.62523 -13.37440 -13.03526 -12.92532 -12.71745 -12.56135 -12.20357 -12.09929 -12.00871 -11.95438 -11.84755 -11.63882 -11.51192 -11.25756 -10.58196 -10.44068 -9.80087 -9.59938 -9.44433 -8.59569 -6.32769 0.46833 0.51934 1.52259 1.60622 1.78328 2.56504 2.87138 3.09506 3.20111 3.71338 3.86014 3.98602 4.08826 4.15893 4.18456 4.25334 4.31216 4.40063 4.45596 4.46843 4.62410 4.64693 4.71228 4.74397 4.83262 4.86705 5.03781 5.05852 5.11338 5.15426 5.18360 5.23193 5.36636 5.41086 5.60938 5.61800 5.64192 5.72400 5.78378 6.11860 6.14087 6.16978 6.23338 6.66566 7.47932 8.79788 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035619 B = 0.003952 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.911334 B = 7082.525420 C = 7287.472802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.040 4.040 3 H 0.072 0.928 4 C 0.058 3.942 5 N -0.508 5.508 6 C 0.048 3.952 7 C -0.105 4.105 8 C 0.022 3.978 9 H -0.005 1.005 10 C -0.610 4.610 11 H 0.043 0.957 12 C -0.029 4.029 13 N -0.935 5.935 14 Si 1.115 2.885 15 H -0.275 1.275 16 H -0.273 1.273 17 H -0.283 1.283 18 C 0.058 3.942 19 C -0.084 4.084 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.125 4.125 24 C -0.133 4.133 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.022 0.978 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.033 0.967 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.263 0.737 35 H 0.028 0.972 36 H 0.069 0.931 37 H 0.125 0.875 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.708 -6.683 -20.564 21.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.059 4.059 3 H 0.091 0.909 4 C -0.070 4.070 5 N -0.232 5.232 6 C -0.080 4.080 7 C -0.144 4.144 8 C 0.003 3.997 9 H 0.014 0.986 10 C -0.648 4.648 11 H 0.061 0.939 12 C -0.228 4.228 13 N -0.573 5.573 14 Si 0.937 3.063 15 H -0.201 1.201 16 H -0.198 1.198 17 H -0.209 1.209 18 C -0.069 4.069 19 C -0.085 4.085 20 C -0.145 4.145 21 C -0.143 4.143 22 C -0.150 4.150 23 C -0.143 4.143 24 C -0.151 4.151 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.143 0.857 38 H 0.158 0.842 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.528 -6.020 -19.286 20.211 hybrid contribution -0.004 -0.539 -0.924 1.070 sum -0.532 -6.559 -20.210 21.255 Atomic orbital electron populations 1.21651 0.93110 1.02069 1.01586 1.20028 0.97152 0.98514 0.90165 0.90932 1.22305 0.97295 0.97624 0.89767 1.65368 1.52194 1.04004 1.01613 1.22993 0.95583 0.93056 0.96331 1.22296 0.99085 0.98412 0.94627 1.19521 0.95037 0.92158 0.92963 0.98638 1.22387 1.17716 1.09859 1.14825 0.93873 1.27173 1.02845 0.92855 0.99922 1.70853 1.20206 1.26867 1.39328 0.82955 0.72935 0.76206 0.74206 1.20085 1.19801 1.20862 1.22922 0.97710 0.96460 0.89839 1.19939 0.97831 0.94769 0.95935 1.21196 1.00682 0.94270 0.98318 1.21442 0.97869 1.00843 0.94185 1.21472 0.98468 0.94900 1.00168 1.21428 0.99993 0.95422 0.97492 1.21300 0.98222 1.00530 0.95030 0.92429 0.92432 0.92443 0.95943 0.90412 0.89387 0.94848 0.94223 0.94314 0.92636 0.95339 0.91304 0.85747 0.84219 0.83945 0.84216 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.90 71.98 0.64 -2.39 16 2 C -0.04 -1.01 2.57 -11.54 -0.03 -1.04 16 3 H 0.07 1.89 6.78 -2.39 -0.02 1.87 16 4 C 0.06 1.76 3.93 86.31 0.34 2.10 16 5 N -0.51 -18.66 4.82 -881.49 -4.25 -22.92 16 6 C 0.05 1.85 5.74 86.45 0.50 2.35 16 7 C -0.11 -5.03 5.03 31.49 0.16 -4.87 16 8 C 0.02 1.15 2.65 -10.65 -0.03 1.13 16 9 H 0.00 -0.26 8.04 -2.39 -0.02 -0.28 16 10 C -0.61 -34.74 8.37 25.60 0.21 -34.53 16 11 H 0.04 2.44 7.58 -2.91 -0.02 2.42 16 12 C -0.03 -1.68 5.09 84.65 0.43 -1.25 16 13 N -0.94 -57.16 13.27 21.45 0.28 -56.87 16 14 Si 1.11 50.66 29.90 68.60 2.05 52.71 16 15 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 18 C 0.06 2.52 6.01 86.45 0.52 3.04 16 19 C -0.08 -1.96 4.78 -19.87 -0.09 -2.05 16 20 C -0.13 -2.70 8.76 22.27 0.20 -2.51 16 21 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 22 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 23 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 24 C -0.13 -2.84 9.67 22.27 0.22 -2.63 16 25 H 0.06 1.56 7.75 -2.39 -0.02 1.54 16 26 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.06 1.29 7.40 -2.39 -0.02 1.27 16 28 H 0.02 0.72 7.88 -2.39 -0.02 0.71 16 29 H 0.08 2.22 7.55 -2.39 -0.02 2.20 16 30 H 0.09 2.95 7.64 -2.39 -0.02 2.93 16 31 H 0.03 1.28 7.82 -2.39 -0.02 1.26 16 32 H 0.04 1.87 7.92 -2.39 -0.02 1.85 16 33 H 0.04 2.04 7.23 -2.39 -0.02 2.02 16 34 H 0.26 16.15 6.00 -92.71 -0.56 15.59 16 35 H 0.03 1.26 7.56 -2.39 -0.02 1.24 16 36 H 0.07 2.82 8.14 -2.38 -0.02 2.80 16 37 H 0.12 2.48 7.16 -2.91 -0.02 2.46 16 38 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.13 2.44 7.95 -2.91 -0.02 2.41 16 Total: -1.00 -64.03 323.69 3.00 -61.03 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 1.19 Total: 14.82 kcal Atomic # 6 Polarization: -52.49 SS G_CDS: 3.73 Total: -48.76 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -3.97 Total: -79.79 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 2.05 Total: 52.71 kcal Total: -64.03 3.00 -61.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397566001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.673 kcal (2) G-P(sol) polarization free energy of solvation -64.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds