Wall clock time and date at job start Mon Mar 30 2020 06:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46757 * 2 1 4 4 C 1.53001 * 109.47157 * 240.00255 * 2 1 3 5 5 N 1.46907 * 109.47271 * 65.17365 * 4 2 1 6 6 C 1.47901 * 110.99667 * 175.90330 * 5 4 2 7 7 C 1.53994 * 107.05568 * 214.15203 * 6 5 4 8 8 C 1.54596 * 105.13870 * 1.23141 * 7 6 5 9 9 H 1.09004 * 110.72704 * 263.59370 * 8 7 6 10 10 C 1.50704 * 110.72444 * 140.31379 * 8 7 6 11 11 H 1.08004 * 119.99921 * 265.30792 * 10 8 7 12 12 C 1.37875 * 120.00040 * 85.30789 * 10 8 7 13 13 N 1.31518 * 119.99785 * 185.15302 * 12 10 8 14 14 Si 1.86801 * 120.00019 * 5.15069 * 12 10 8 15 15 H 1.48496 * 109.46886 * 94.88538 * 14 12 10 16 16 H 1.48500 * 109.46739 * 214.88457 * 14 12 10 17 17 H 1.48496 * 109.47258 * 334.88194 * 14 12 10 18 18 C 1.48528 * 110.99642 * 58.50754 * 5 4 2 19 19 C 1.50703 * 109.47399 * 119.99931 * 2 1 3 20 20 C 1.38234 * 119.99627 * 59.73057 * 19 2 1 21 21 C 1.38239 * 119.99734 * 179.76800 * 20 19 2 22 22 C 1.38234 * 119.99907 * 0.50185 * 21 20 19 23 23 C 1.38234 * 119.99881 * 359.75036 * 22 21 20 24 24 C 1.38230 * 120.00293 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.46667 * 174.95109 * 1 2 3 26 26 H 1.09000 * 109.47502 * 294.94831 * 1 2 3 27 27 H 1.08999 * 109.47108 * 54.95502 * 1 2 3 28 28 H 1.08999 * 109.47286 * 305.17390 * 4 2 1 29 29 H 1.09006 * 109.47144 * 185.17612 * 4 2 1 30 30 H 1.09004 * 109.91264 * 94.80800 * 6 5 4 31 31 H 1.08999 * 109.92162 * 333.51107 * 6 5 4 32 32 H 1.09000 * 110.30716 * 120.14358 * 7 6 5 33 33 H 1.08996 * 110.31388 * 242.21380 * 7 6 5 34 34 H 0.96997 * 119.99608 * 179.97438 * 13 12 10 35 35 H 1.09004 * 110.67176 * 41.28623 * 18 5 4 36 36 H 1.09004 * 110.66964 * 278.15289 * 18 5 4 37 37 H 1.08005 * 119.99995 * 359.97438 * 20 19 2 38 38 H 1.08004 * 119.99654 * 180.22548 * 21 20 19 39 39 H 1.07996 * 120.00003 * 179.72424 * 22 21 20 40 40 H 1.08006 * 119.99669 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.00471 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6549 0.0397 -2.4455 6 6 2.2150 -0.5758 -3.6681 7 6 2.5460 0.5715 -4.6405 8 6 2.1697 1.8649 -3.8819 9 1 1.1704 2.1990 -4.1612 10 6 3.1863 2.9477 -4.1370 11 1 4.0037 3.0945 -3.4464 12 6 3.0729 3.7510 -5.2518 13 7 4.0134 4.6277 -5.5290 14 14 1.5837 3.5942 -6.3685 15 1 0.5623 4.5978 -5.9752 16 1 1.9936 3.8304 -7.7761 17 1 1.0116 2.2297 -6.2419 18 6 2.2040 1.4190 -2.3985 19 6 2.0324 -0.7104 1.2305 20 6 1.6938 -2.0322 1.4520 21 6 2.1586 -2.6853 2.5783 22 6 2.9534 -2.0135 3.4882 23 6 3.2876 -0.6901 3.2692 24 6 2.8275 -0.0387 2.1401 25 1 -0.3633 -1.0238 -0.0904 26 1 -0.3634 0.4335 0.9317 27 1 -0.3633 0.5901 -0.8413 28 1 1.6030 -1.7186 -1.2969 29 1 3.1261 -0.8022 -1.2041 30 1 1.4799 -1.2433 -4.1180 31 1 3.1220 -1.1287 -3.4236 32 1 3.6094 0.5693 -4.8802 33 1 1.9535 0.4789 -5.5507 34 1 3.9338 5.1925 -6.3135 35 1 3.2269 1.4133 -2.0220 36 1 1.5719 2.0641 -1.7881 37 1 1.0689 -2.5557 0.7435 38 1 1.8971 -3.7191 2.7495 39 1 3.3128 -2.5224 4.3703 40 1 3.9082 -0.1652 3.9804 41 1 3.0883 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397566002.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:29 Heat of formation + Delta-G solvation = 15.431317 kcal Electronic energy + Delta-G solvation = -19159.266364 eV Core-core repulsion = 16424.143939 eV Total energy + Delta-G solvation = -2735.122424 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.65526 -38.21154 -35.02720 -32.71514 -30.96535 -30.74375 -29.17669 -28.16746 -25.87155 -24.21725 -22.90611 -22.35920 -20.53049 -19.77989 -19.09210 -16.91196 -16.87132 -15.66332 -15.39866 -14.89667 -14.59679 -13.98070 -13.85424 -13.65825 -13.40415 -13.16010 -12.83878 -12.50672 -12.46745 -12.06004 -11.86002 -11.61816 -11.29678 -11.15591 -10.93300 -10.85343 -10.61531 -10.39657 -10.22673 -10.01457 -9.67700 -9.54087 -8.99924 -8.96304 -8.70521 -8.51361 -7.84904 -6.07713 -4.06487 1.32783 1.35804 3.30390 3.39403 3.43636 3.74680 4.43684 4.45766 4.76492 4.89512 4.97084 5.09721 5.11665 5.23694 5.34115 5.46571 5.51779 5.55509 5.62483 5.76837 5.86328 5.93222 6.00476 6.03452 6.08543 6.13449 6.22061 6.29147 6.36578 6.38389 6.45851 6.51761 6.62581 6.72372 6.83683 6.87020 6.97121 7.13534 7.39766 7.47615 7.66377 7.83449 8.53555 8.96304 9.55915 11.05303 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035077 B = 0.004306 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.057253 B = 6500.893560 C = 6795.447311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.055 4.055 3 H 0.083 0.917 4 C 0.059 3.941 5 N -0.522 5.522 6 C 0.039 3.961 7 C -0.134 4.134 8 C 0.018 3.982 9 H 0.040 0.960 10 C -0.510 4.510 11 H 0.071 0.929 12 C 0.071 3.929 13 N -0.901 5.901 14 Si 0.875 3.125 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.258 1.258 18 C 0.048 3.952 19 C -0.067 4.067 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.131 4.131 23 C -0.120 4.120 24 C -0.117 4.117 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.030 0.970 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.263 0.737 35 H 0.039 0.961 36 H 0.068 0.932 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.949 -13.216 14.173 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.073 4.073 3 H 0.101 0.899 4 C -0.069 4.069 5 N -0.246 5.246 6 C -0.089 4.089 7 C -0.173 4.173 8 C -0.002 4.002 9 H 0.058 0.942 10 C -0.548 4.548 11 H 0.090 0.910 12 C -0.130 4.130 13 N -0.539 5.539 14 Si 0.702 3.298 15 H -0.204 1.204 16 H -0.216 1.216 17 H -0.182 1.182 18 C -0.079 4.079 19 C -0.068 4.068 20 C -0.133 4.133 21 C -0.140 4.140 22 C -0.149 4.149 23 C -0.138 4.138 24 C -0.135 4.135 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.461 -13.080 14.025 19.941 hybrid contribution 0.317 -0.077 -0.581 0.667 sum -5.144 -13.157 13.444 19.502 Atomic orbital electron populations 1.21696 0.93592 1.01879 1.01644 1.20242 0.96861 0.99459 0.90753 0.89879 1.22257 0.97585 0.97113 0.89993 1.64787 1.55406 1.03371 1.01002 1.22822 0.96810 0.97511 0.91717 1.22851 1.01201 0.95659 0.97551 1.20003 0.97211 0.92913 0.90062 0.94190 1.20975 1.10574 1.14184 1.09097 0.91046 1.25026 0.95977 0.94800 0.97215 1.69923 1.33171 1.23289 1.27520 0.86881 0.83656 0.79334 0.79916 1.20441 1.21577 1.18190 1.23247 0.96866 0.87835 0.99911 1.19988 0.96582 0.94197 0.95998 1.21032 1.00231 0.94441 0.97599 1.21121 0.98326 0.99700 0.94808 1.21097 0.99321 0.94969 0.99513 1.21133 1.00054 0.94966 0.97617 1.21159 0.97844 1.00141 0.94359 0.93055 0.93507 0.90968 0.91454 0.95141 0.91861 0.94952 0.91591 0.93016 0.92713 0.94313 0.91326 0.86133 0.86372 0.86475 0.86265 0.85992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 8.76 37.16 0.33 -1.33 16 2 C -0.05 -0.73 2.39 -91.77 -0.22 -0.95 16 3 H 0.08 1.21 6.37 -51.93 -0.33 0.88 16 4 C 0.06 0.88 3.96 -3.82 -0.02 0.87 16 5 N -0.52 -9.19 4.91 -230.44 -1.13 -10.32 16 6 C 0.04 0.70 6.70 -2.75 -0.02 0.68 16 7 C -0.13 -2.84 6.09 -25.37 -0.15 -2.99 16 8 C 0.02 0.41 2.35 -89.91 -0.21 0.20 16 9 H 0.04 0.96 6.02 -51.93 -0.31 0.65 16 10 C -0.51 -14.13 8.83 -34.44 -0.30 -14.44 16 11 H 0.07 2.15 7.98 -52.48 -0.42 1.73 16 12 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 13 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 14 Si 0.87 21.41 27.02 -169.99 -4.59 16.81 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.26 -6.01 5.53 56.52 0.31 -5.69 16 18 C 0.05 0.98 4.78 -1.90 -0.01 0.97 16 19 C -0.07 -0.84 4.78 -104.62 -0.50 -1.34 16 20 C -0.12 -1.31 8.81 -39.58 -0.35 -1.66 16 21 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 22 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 23 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 24 C -0.12 -1.41 9.67 -39.59 -0.38 -1.79 16 25 H 0.05 0.60 7.56 -51.93 -0.39 0.21 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 28 H 0.07 0.92 7.59 -51.93 -0.39 0.53 16 29 H 0.03 0.48 7.98 -51.93 -0.41 0.07 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.03 0.55 7.67 -51.93 -0.40 0.15 16 32 H 0.07 1.46 7.84 -51.93 -0.41 1.05 16 33 H 0.05 1.08 7.11 -51.93 -0.37 0.71 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.04 0.81 7.86 -51.93 -0.41 0.40 16 36 H 0.07 1.33 7.54 -51.93 -0.39 0.94 16 37 H 0.12 1.24 7.23 -52.48 -0.38 0.86 16 38 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 41 H 0.12 1.38 7.95 -52.49 -0.42 0.97 16 LS Contribution 321.71 15.07 4.85 4.85 Total: -1.00 -29.59 321.71 -10.01 -39.60 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.78 Total: 0.54 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -3.13 Total: -24.86 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.36 Total: -36.94 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.59 Total: 16.81 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.59 -10.01 -39.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397566002.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.034 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds