Wall clock time and date at job start Mon Mar 30 2020 06:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46757 * 2 1 4 4 C 1.53001 * 109.47157 * 240.00255 * 2 1 3 5 5 N 1.46907 * 109.47271 * 65.17365 * 4 2 1 6 6 C 1.47901 * 110.99667 * 175.90330 * 5 4 2 7 7 C 1.53994 * 107.05568 * 214.15203 * 6 5 4 8 8 C 1.54596 * 105.13870 * 1.23141 * 7 6 5 9 9 H 1.09004 * 110.72704 * 263.59370 * 8 7 6 10 10 C 1.50704 * 110.72444 * 140.31379 * 8 7 6 11 11 H 1.08004 * 119.99921 * 265.30792 * 10 8 7 12 12 C 1.37875 * 120.00040 * 85.30789 * 10 8 7 13 13 N 1.31518 * 119.99785 * 185.15302 * 12 10 8 14 14 Si 1.86801 * 120.00019 * 5.15069 * 12 10 8 15 15 H 1.48496 * 109.46886 * 94.88538 * 14 12 10 16 16 H 1.48500 * 109.46739 * 214.88457 * 14 12 10 17 17 H 1.48496 * 109.47258 * 334.88194 * 14 12 10 18 18 C 1.48528 * 110.99642 * 58.50754 * 5 4 2 19 19 C 1.50703 * 109.47399 * 119.99931 * 2 1 3 20 20 C 1.38234 * 119.99627 * 59.73057 * 19 2 1 21 21 C 1.38239 * 119.99734 * 179.76800 * 20 19 2 22 22 C 1.38234 * 119.99907 * 0.50185 * 21 20 19 23 23 C 1.38234 * 119.99881 * 359.75036 * 22 21 20 24 24 C 1.38230 * 120.00293 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.46667 * 174.95109 * 1 2 3 26 26 H 1.09000 * 109.47502 * 294.94831 * 1 2 3 27 27 H 1.08999 * 109.47108 * 54.95502 * 1 2 3 28 28 H 1.08999 * 109.47286 * 305.17390 * 4 2 1 29 29 H 1.09006 * 109.47144 * 185.17612 * 4 2 1 30 30 H 1.09004 * 109.91264 * 94.80800 * 6 5 4 31 31 H 1.08999 * 109.92162 * 333.51107 * 6 5 4 32 32 H 1.09000 * 110.30716 * 120.14358 * 7 6 5 33 33 H 1.08996 * 110.31388 * 242.21380 * 7 6 5 34 34 H 0.96997 * 119.99608 * 179.97438 * 13 12 10 35 35 H 1.09004 * 110.67176 * 41.28623 * 18 5 4 36 36 H 1.09004 * 110.66964 * 278.15289 * 18 5 4 37 37 H 1.08005 * 119.99995 * 359.97438 * 20 19 2 38 38 H 1.08004 * 119.99654 * 180.22548 * 21 20 19 39 39 H 1.07996 * 120.00003 * 179.72424 * 22 21 20 40 40 H 1.08006 * 119.99669 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.00471 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6549 0.0397 -2.4455 6 6 2.2150 -0.5758 -3.6681 7 6 2.5460 0.5715 -4.6405 8 6 2.1697 1.8649 -3.8819 9 1 1.1704 2.1990 -4.1612 10 6 3.1863 2.9477 -4.1370 11 1 4.0037 3.0945 -3.4464 12 6 3.0729 3.7510 -5.2518 13 7 4.0134 4.6277 -5.5290 14 14 1.5837 3.5942 -6.3685 15 1 0.5623 4.5978 -5.9752 16 1 1.9936 3.8304 -7.7761 17 1 1.0116 2.2297 -6.2419 18 6 2.2040 1.4190 -2.3985 19 6 2.0324 -0.7104 1.2305 20 6 1.6938 -2.0322 1.4520 21 6 2.1586 -2.6853 2.5783 22 6 2.9534 -2.0135 3.4882 23 6 3.2876 -0.6901 3.2692 24 6 2.8275 -0.0387 2.1401 25 1 -0.3633 -1.0238 -0.0904 26 1 -0.3634 0.4335 0.9317 27 1 -0.3633 0.5901 -0.8413 28 1 1.6030 -1.7186 -1.2969 29 1 3.1261 -0.8022 -1.2041 30 1 1.4799 -1.2433 -4.1180 31 1 3.1220 -1.1287 -3.4236 32 1 3.6094 0.5693 -4.8802 33 1 1.9535 0.4789 -5.5507 34 1 3.9338 5.1925 -6.3135 35 1 3.2269 1.4133 -2.0220 36 1 1.5719 2.0641 -1.7881 37 1 1.0689 -2.5557 0.7435 38 1 1.8971 -3.7191 2.7495 39 1 3.3128 -2.5224 4.3703 40 1 3.9082 -0.1652 3.9804 41 1 3.0883 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397566002.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:28 Heat of formation + Delta-G solvation = -1.024944 kcal Electronic energy + Delta-G solvation = -19159.979961 eV Core-core repulsion = 16424.143939 eV Total energy + Delta-G solvation = -2735.836021 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65866 -39.57306 -36.26915 -34.66421 -32.34842 -31.75689 -30.40002 -29.59009 -27.40175 -25.77435 -23.97754 -23.27695 -21.91023 -21.38601 -20.43791 -18.98632 -17.77277 -16.97333 -16.71270 -16.16689 -15.79255 -15.48715 -15.27016 -14.86192 -14.66709 -14.34523 -14.15286 -13.91629 -13.82323 -13.40099 -13.07455 -12.98335 -12.75700 -12.48215 -12.42990 -12.07471 -12.03377 -11.75551 -11.66572 -11.48938 -11.39623 -11.34223 -11.00179 -10.68266 -9.78504 -9.56593 -9.30546 -8.29029 -6.32592 0.48934 0.53544 1.36861 1.38771 1.51409 2.37234 2.89929 3.06374 3.14818 3.75247 3.92051 4.04173 4.09860 4.19987 4.21928 4.32966 4.37316 4.39879 4.50268 4.52005 4.66672 4.68452 4.77424 4.83050 4.86802 4.93702 5.07414 5.12730 5.15931 5.18348 5.21119 5.27929 5.36745 5.45133 5.56969 5.63080 5.65706 5.67733 5.80295 5.98313 6.16345 6.22198 6.35600 6.73261 7.33121 8.87757 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035077 B = 0.004306 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.057253 B = 6500.893560 C = 6795.447311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.049 4.049 3 H 0.063 0.937 4 C 0.063 3.937 5 N -0.516 5.516 6 C 0.044 3.956 7 C -0.132 4.132 8 C 0.010 3.990 9 H 0.040 0.960 10 C -0.514 4.514 11 H 0.028 0.972 12 C 0.013 3.987 13 N -0.951 5.951 14 Si 0.942 3.058 15 H -0.272 1.272 16 H -0.288 1.288 17 H -0.235 1.235 18 C 0.060 3.940 19 C -0.082 4.082 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.133 4.133 23 C -0.127 4.127 24 C -0.138 4.138 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.019 0.981 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.265 0.735 35 H 0.020 0.980 36 H 0.072 0.928 37 H 0.132 0.868 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.136 0.864 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.858 -15.877 14.881 22.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.068 4.068 3 H 0.081 0.919 4 C -0.065 4.065 5 N -0.240 5.240 6 C -0.083 4.083 7 C -0.171 4.171 8 C -0.009 4.009 9 H 0.059 0.941 10 C -0.552 4.552 11 H 0.046 0.954 12 C -0.184 4.184 13 N -0.591 5.591 14 Si 0.766 3.234 15 H -0.197 1.197 16 H -0.214 1.214 17 H -0.158 1.158 18 C -0.067 4.067 19 C -0.083 4.083 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.150 4.150 23 C -0.145 4.145 24 C -0.156 4.156 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.037 0.963 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.091 0.909 37 H 0.150 0.850 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.154 0.846 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.375 -15.764 14.753 22.816 hybrid contribution 1.016 0.740 -0.682 1.430 sum -6.359 -15.024 14.071 21.545 Atomic orbital electron populations 1.21633 0.92749 1.02478 1.01306 1.20131 0.97482 0.98349 0.90854 0.91896 1.22319 0.97085 0.97839 0.89304 1.64814 1.54913 1.02164 1.02136 1.22822 0.98133 0.96463 0.90927 1.22710 1.00147 0.95717 0.98486 1.19980 0.95588 0.92682 0.92691 0.94134 1.21214 1.10321 1.15563 1.08104 0.95406 1.25921 0.99085 0.94402 0.99026 1.70072 1.35627 1.24818 1.28614 0.85812 0.79665 0.80514 0.77442 1.19730 1.21379 1.15831 1.22994 0.96151 0.89829 0.97752 1.19931 0.97602 0.94971 0.95772 1.21210 1.00478 0.93926 0.98422 1.21468 0.97630 1.00885 0.94149 1.21465 0.98646 0.94667 1.00256 1.21397 1.00067 0.95627 0.97391 1.21287 0.98675 1.00304 0.95353 0.91671 0.92920 0.92448 0.89249 0.96305 0.89172 0.94044 0.93515 0.92260 0.92570 0.96150 0.90934 0.84996 0.83845 0.83940 0.84617 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 8.76 71.98 0.63 -2.31 16 2 C -0.05 -1.29 2.39 -11.54 -0.03 -1.32 16 3 H 0.06 1.87 6.37 -2.39 -0.02 1.86 16 4 C 0.06 1.76 3.96 86.30 0.34 2.11 16 5 N -0.52 -17.34 4.91 -882.99 -4.33 -21.67 16 6 C 0.04 1.48 6.70 86.45 0.58 2.05 16 7 C -0.13 -5.44 6.09 31.47 0.19 -5.25 16 8 C 0.01 0.47 2.35 -10.33 -0.02 0.45 16 9 H 0.04 1.89 6.02 -2.38 -0.01 1.88 16 10 C -0.51 -29.47 8.83 25.60 0.23 -29.24 16 11 H 0.03 1.78 7.98 -2.91 -0.02 1.76 16 12 C 0.01 0.73 5.47 84.65 0.46 1.20 16 13 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 14 Si 0.94 44.14 27.02 68.60 1.85 46.00 16 15 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 17 H -0.24 -10.08 5.53 99.48 0.55 -9.53 16 18 C 0.06 2.45 4.78 86.65 0.41 2.86 16 19 C -0.08 -1.96 4.78 -19.87 -0.09 -2.06 16 20 C -0.12 -2.49 8.81 22.27 0.20 -2.29 16 21 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16 22 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 23 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 24 C -0.14 -3.27 9.67 22.27 0.22 -3.06 16 25 H 0.06 1.35 7.56 -2.38 -0.02 1.33 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.52 7.90 -2.39 -0.02 1.50 16 28 H 0.09 2.16 7.59 -2.39 -0.02 2.14 16 29 H 0.02 0.58 7.98 -2.38 -0.02 0.56 16 30 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.04 1.31 7.67 -2.39 -0.02 1.30 16 32 H 0.05 2.07 7.84 -2.39 -0.02 2.05 16 33 H 0.06 2.33 7.11 -2.39 -0.02 2.31 16 34 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 35 H 0.02 0.88 7.86 -2.38 -0.02 0.87 16 36 H 0.07 2.85 7.54 -2.39 -0.02 2.83 16 37 H 0.13 2.30 7.23 -2.91 -0.02 2.28 16 38 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 39 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.12 2.75 7.95 -2.91 -0.02 2.72 16 Total: -1.00 -65.21 321.71 2.43 -62.78 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.82 Total: 15.55 kcal Atomic # 6 Polarization: -46.93 SS G_CDS: 3.78 Total: -43.15 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -4.03 Total: -81.18 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.85 Total: 46.00 kcal Total: -65.21 2.43 -62.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397566002.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.757 kcal (2) G-P(sol) polarization free energy of solvation -65.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds