Wall clock time and date at job start Mon Mar 30 2020 06:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46925 * 2 1 4 4 C 1.53007 * 109.47095 * 120.00089 * 2 1 3 5 5 N 1.46898 * 109.46660 * 294.99778 * 4 2 1 6 6 C 1.48533 * 111.00229 * 287.39570 * 5 4 2 7 7 C 1.54938 * 103.22943 * 200.28355 * 6 5 4 8 8 C 1.54604 * 102.92068 * 37.41397 * 7 6 5 9 9 H 1.08999 * 110.38990 * 96.99973 * 8 7 6 10 10 C 1.50695 * 110.30967 * 219.12952 * 8 7 6 11 11 H 1.07995 * 120.00496 * 115.71638 * 10 8 7 12 12 C 1.37880 * 119.99572 * 295.71571 * 10 8 7 13 13 N 1.31511 * 120.00327 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99951 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47297 * 59.99744 * 14 12 10 16 16 H 1.48503 * 109.47261 * 299.99924 * 14 12 10 17 17 H 1.48500 * 109.47454 * 179.97438 * 14 12 10 18 18 C 1.47905 * 110.99481 * 170.00154 * 5 4 2 19 19 C 1.50704 * 109.46658 * 239.99600 * 2 1 3 20 20 C 1.38227 * 120.00497 * 299.72449 * 19 2 1 21 21 C 1.38230 * 120.00263 * 179.78677 * 20 19 2 22 22 C 1.38239 * 119.99568 * 0.46645 * 21 20 19 23 23 C 1.38226 * 120.00390 * 359.77072 * 22 21 20 24 24 C 1.38237 * 119.99311 * 119.99957 * 19 2 1 25 25 H 1.08999 * 109.47212 * 299.99645 * 1 2 3 26 26 H 1.08998 * 109.47319 * 60.00258 * 1 2 3 27 27 H 1.09003 * 109.47425 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47017 * 174.99859 * 4 2 1 29 29 H 1.08998 * 109.46745 * 54.99660 * 4 2 1 30 30 H 1.09003 * 110.66490 * 318.72256 * 6 5 4 31 31 H 1.09002 * 110.66494 * 81.67854 * 6 5 4 32 32 H 1.08996 * 110.72459 * 279.05663 * 7 6 5 33 33 H 1.09001 * 110.72436 * 155.76940 * 7 6 5 34 34 H 0.97006 * 119.99995 * 359.97438 * 13 12 10 35 35 H 1.09004 * 109.91703 * 26.49482 * 18 5 4 36 36 H 1.08996 * 110.08367 * 265.28393 * 18 5 4 37 37 H 1.07998 * 119.99936 * 0.02562 * 20 19 2 38 38 H 1.08000 * 120.00558 * 180.25192 * 21 20 19 39 39 H 1.08009 * 120.00059 * 179.78476 * 22 21 20 40 40 H 1.07998 * 120.00529 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.00613 * 359.97438 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6514 0.0375 2.4456 6 6 2.4559 1.2795 2.5729 7 6 2.3095 1.6448 4.0714 8 6 2.3260 0.2642 4.7670 9 1 3.3267 0.0357 5.1338 10 6 1.3352 0.2386 5.9022 11 1 0.4860 -0.4274 5.8628 12 6 1.5129 1.0655 6.9910 13 7 2.5467 1.8770 7.0388 14 14 0.2852 1.0333 8.3985 15 1 0.2417 -0.3297 8.9864 16 1 -1.0618 1.3957 7.8889 17 1 0.6998 2.0079 9.4395 18 6 1.9143 -0.7410 3.6754 19 6 2.0322 -0.7105 -1.2305 20 6 1.7030 -2.0356 -1.4463 21 6 2.1601 -2.6860 -2.5772 22 6 2.9544 -2.0140 -3.4874 23 6 3.2877 -0.6904 -3.2692 24 6 2.8269 -0.0387 -2.1404 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1263 -0.7995 1.2056 29 1 1.6053 -1.7198 1.2952 30 1 3.4998 1.0889 2.3235 31 1 2.0485 2.0682 1.9403 32 1 1.3647 2.1570 4.2531 33 1 3.1499 2.2542 4.4038 34 1 3.1845 1.8935 6.3080 35 1 2.7230 -1.4505 3.5000 36 1 1.0135 -1.2730 3.9814 37 1 1.0855 -2.5616 -0.7334 38 1 1.8995 -3.7201 -2.7479 39 1 3.3144 -2.5231 -4.3693 40 1 3.9086 -0.1655 -3.9800 41 1 3.0875 0.9954 -1.9698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397566003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:31 Heat of formation + Delta-G solvation = 10.224172 kcal Electronic energy + Delta-G solvation = -19091.875022 eV Core-core repulsion = 16356.526798 eV Total energy + Delta-G solvation = -2735.348223 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.66250 -38.18720 -35.15147 -32.95835 -31.00167 -30.22663 -28.87058 -28.24309 -25.48254 -23.84753 -23.15705 -22.42515 -20.67978 -19.71853 -19.37545 -16.94181 -16.85139 -15.64771 -15.38589 -14.89340 -14.52559 -14.03955 -13.71878 -13.48943 -13.41837 -13.14213 -12.91326 -12.66152 -12.14377 -11.92146 -11.79917 -11.43293 -11.20922 -11.09729 -10.87193 -10.78210 -10.55086 -10.37923 -10.33612 -10.06984 -9.77124 -9.56268 -9.00612 -8.74531 -8.42342 -8.31960 -7.78509 -6.29388 -4.00391 1.28820 1.31456 3.46866 3.48621 3.67044 3.70623 4.44542 4.57297 4.73205 4.86244 4.94144 5.05361 5.10333 5.35528 5.41321 5.43202 5.47799 5.53775 5.69725 5.76034 5.88163 5.94533 5.97729 5.99816 6.09475 6.15361 6.19299 6.24652 6.36642 6.40907 6.41447 6.54772 6.67579 6.73024 6.88718 6.93228 7.02534 7.28422 7.33984 7.70880 7.80977 8.28254 8.48134 8.93182 9.70484 11.08796 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.046423 B = 0.003809 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.006549 B = 7349.498112 C = 7518.594249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.048 4.048 3 H 0.076 0.924 4 C 0.057 3.943 5 N -0.512 5.512 6 C 0.033 3.967 7 C -0.109 4.109 8 C 0.025 3.975 9 H 0.019 0.981 10 C -0.586 4.586 11 H 0.050 0.950 12 C 0.017 3.983 13 N -0.915 5.915 14 Si 1.067 2.933 15 H -0.289 1.289 16 H -0.288 1.288 17 H -0.284 1.284 18 C 0.053 3.947 19 C -0.068 4.068 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.131 4.131 23 C -0.120 4.120 24 C -0.119 4.119 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.029 0.971 29 H 0.068 0.932 30 H 0.029 0.971 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.270 0.730 35 H 0.018 0.982 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.135 -5.358 -18.908 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.067 4.067 3 H 0.095 0.905 4 C -0.072 4.072 5 N -0.235 5.235 6 C -0.095 4.095 7 C -0.148 4.148 8 C 0.006 3.994 9 H 0.037 0.963 10 C -0.625 4.625 11 H 0.068 0.932 12 C -0.186 4.186 13 N -0.551 5.551 14 Si 0.896 3.104 15 H -0.216 1.216 16 H -0.215 1.215 17 H -0.209 1.209 18 C -0.074 4.074 19 C -0.068 4.068 20 C -0.132 4.132 21 C -0.138 4.138 22 C -0.149 4.149 23 C -0.138 4.138 24 C -0.137 4.137 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.091 0.909 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.040 -4.579 -17.473 18.093 hybrid contribution 1.344 -0.969 -1.574 2.286 sum 0.304 -5.548 -19.048 19.842 Atomic orbital electron populations 1.21708 0.93514 1.01756 1.01980 1.20145 0.96924 0.98932 0.90672 0.90530 1.22269 0.97376 0.97169 0.90387 1.64684 1.52263 1.05144 1.01457 1.23293 0.94224 0.92700 0.99249 1.22684 1.01055 0.99847 0.91226 1.19638 0.96737 0.90076 0.92950 0.96298 1.21990 1.10623 1.25679 1.04164 0.93161 1.25781 0.99523 0.93094 1.00246 1.70797 1.12440 1.36550 1.35319 0.83567 0.75045 0.76095 0.75715 1.21572 1.21450 1.20916 1.22932 0.98905 0.96015 0.89581 1.20020 0.96545 0.94223 0.96048 1.21056 1.00201 0.94419 0.97547 1.21139 0.98206 0.99790 0.94670 1.21101 0.99282 0.94957 0.99563 1.21117 1.00140 0.94990 0.97598 1.21115 0.98098 0.99979 0.94518 0.90595 0.93623 0.93089 0.95327 0.91330 0.95292 0.91642 0.91351 0.93053 0.91826 0.96339 0.90894 0.86025 0.86279 0.86437 0.86320 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.90 37.16 0.33 -1.40 16 2 C -0.05 -0.64 2.59 -91.77 -0.24 -0.88 16 3 H 0.08 1.05 6.91 -51.93 -0.36 0.69 16 4 C 0.06 0.89 3.83 -3.82 -0.01 0.87 16 5 N -0.51 -9.67 4.70 -230.44 -1.08 -10.75 16 6 C 0.03 0.63 5.91 -1.90 -0.01 0.62 16 7 C -0.11 -2.53 5.57 -24.87 -0.14 -2.67 16 8 C 0.03 0.63 2.54 -90.41 -0.23 0.40 16 9 H 0.02 0.51 7.95 -51.93 -0.41 0.10 16 10 C -0.59 -16.44 8.38 -34.44 -0.29 -16.72 16 11 H 0.05 1.41 7.34 -52.49 -0.39 1.02 16 12 C 0.02 0.50 5.34 -17.82 -0.10 0.40 16 13 N -0.91 -27.41 13.45 55.43 0.75 -26.66 16 14 Si 1.07 25.26 29.90 -169.99 -5.08 20.18 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 C 0.05 1.14 6.31 -2.75 -0.02 1.12 16 19 C -0.07 -0.84 4.78 -104.62 -0.50 -1.34 16 20 C -0.11 -1.33 8.76 -39.59 -0.35 -1.67 16 21 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 22 C -0.13 -1.29 10.05 -39.59 -0.40 -1.68 16 23 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.12 -1.36 9.67 -39.58 -0.38 -1.75 16 25 H 0.08 1.13 7.75 -51.93 -0.40 0.73 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.63 7.41 -51.93 -0.38 0.25 16 28 H 0.03 0.46 7.83 -51.93 -0.41 0.06 16 29 H 0.07 1.03 7.49 -51.93 -0.39 0.65 16 30 H 0.03 0.53 7.81 -51.93 -0.41 0.13 16 31 H 0.07 1.14 7.67 -51.93 -0.40 0.74 16 32 H 0.07 1.72 7.86 -51.93 -0.41 1.31 16 33 H 0.05 1.20 7.10 -51.93 -0.37 0.83 16 34 H 0.27 7.99 5.65 -40.82 -0.23 7.76 16 35 H 0.02 0.37 7.77 -51.93 -0.40 -0.03 16 36 H 0.07 1.63 7.39 -51.93 -0.38 1.24 16 37 H 0.12 1.33 7.16 -52.49 -0.38 0.95 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.12 1.23 7.95 -52.49 -0.42 0.82 16 LS Contribution 323.45 15.07 4.87 4.87 Total: -1.00 -29.78 323.45 -10.29 -40.07 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.62 Total: 0.26 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: -3.13 Total: -27.97 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.34 Total: -37.41 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.18 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.78 -10.29 -40.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397566003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.295 kcal (2) G-P(sol) polarization free energy of solvation -29.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds