Wall clock time and date at job start Mon Mar 30 2020 06:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46925 * 2 1 4 4 C 1.53007 * 109.47095 * 120.00089 * 2 1 3 5 5 N 1.46898 * 109.46660 * 294.99778 * 4 2 1 6 6 C 1.48533 * 111.00229 * 287.39570 * 5 4 2 7 7 C 1.54938 * 103.22943 * 200.28355 * 6 5 4 8 8 C 1.54604 * 102.92068 * 37.41397 * 7 6 5 9 9 H 1.08999 * 110.38990 * 96.99973 * 8 7 6 10 10 C 1.50695 * 110.30967 * 219.12952 * 8 7 6 11 11 H 1.07995 * 120.00496 * 115.71638 * 10 8 7 12 12 C 1.37880 * 119.99572 * 295.71571 * 10 8 7 13 13 N 1.31511 * 120.00327 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99951 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47297 * 59.99744 * 14 12 10 16 16 H 1.48503 * 109.47261 * 299.99924 * 14 12 10 17 17 H 1.48500 * 109.47454 * 179.97438 * 14 12 10 18 18 C 1.47905 * 110.99481 * 170.00154 * 5 4 2 19 19 C 1.50704 * 109.46658 * 239.99600 * 2 1 3 20 20 C 1.38227 * 120.00497 * 299.72449 * 19 2 1 21 21 C 1.38230 * 120.00263 * 179.78677 * 20 19 2 22 22 C 1.38239 * 119.99568 * 0.46645 * 21 20 19 23 23 C 1.38226 * 120.00390 * 359.77072 * 22 21 20 24 24 C 1.38237 * 119.99311 * 119.99957 * 19 2 1 25 25 H 1.08999 * 109.47212 * 299.99645 * 1 2 3 26 26 H 1.08998 * 109.47319 * 60.00258 * 1 2 3 27 27 H 1.09003 * 109.47425 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47017 * 174.99859 * 4 2 1 29 29 H 1.08998 * 109.46745 * 54.99660 * 4 2 1 30 30 H 1.09003 * 110.66490 * 318.72256 * 6 5 4 31 31 H 1.09002 * 110.66494 * 81.67854 * 6 5 4 32 32 H 1.08996 * 110.72459 * 279.05663 * 7 6 5 33 33 H 1.09001 * 110.72436 * 155.76940 * 7 6 5 34 34 H 0.97006 * 119.99995 * 359.97438 * 13 12 10 35 35 H 1.09004 * 109.91703 * 26.49482 * 18 5 4 36 36 H 1.08996 * 110.08367 * 265.28393 * 18 5 4 37 37 H 1.07998 * 119.99936 * 0.02562 * 20 19 2 38 38 H 1.08000 * 120.00558 * 180.25192 * 21 20 19 39 39 H 1.08009 * 120.00059 * 179.78476 * 22 21 20 40 40 H 1.07998 * 120.00529 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.00613 * 359.97438 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6514 0.0375 2.4456 6 6 2.4559 1.2795 2.5729 7 6 2.3095 1.6448 4.0714 8 6 2.3260 0.2642 4.7670 9 1 3.3267 0.0357 5.1338 10 6 1.3352 0.2386 5.9022 11 1 0.4860 -0.4274 5.8628 12 6 1.5129 1.0655 6.9910 13 7 2.5467 1.8770 7.0388 14 14 0.2852 1.0333 8.3985 15 1 0.2417 -0.3297 8.9864 16 1 -1.0618 1.3957 7.8889 17 1 0.6998 2.0079 9.4395 18 6 1.9143 -0.7410 3.6754 19 6 2.0322 -0.7105 -1.2305 20 6 1.7030 -2.0356 -1.4463 21 6 2.1601 -2.6860 -2.5772 22 6 2.9544 -2.0140 -3.4874 23 6 3.2877 -0.6904 -3.2692 24 6 2.8269 -0.0387 -2.1404 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1263 -0.7995 1.2056 29 1 1.6053 -1.7198 1.2952 30 1 3.4998 1.0889 2.3235 31 1 2.0485 2.0682 1.9403 32 1 1.3647 2.1570 4.2531 33 1 3.1499 2.2542 4.4038 34 1 3.1845 1.8935 6.3080 35 1 2.7230 -1.4505 3.5000 36 1 1.0135 -1.2730 3.9814 37 1 1.0855 -2.5616 -0.7334 38 1 1.8995 -3.7201 -2.7479 39 1 3.3144 -2.5231 -4.3693 40 1 3.9086 -0.1655 -3.9800 41 1 3.0875 0.9954 -1.9698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397566003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:31 Heat of formation + Delta-G solvation = -5.193114 kcal Electronic energy + Delta-G solvation = -19092.543565 eV Core-core repulsion = 16356.526798 eV Total energy + Delta-G solvation = -2736.016767 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.66278 -39.65934 -36.49969 -34.75968 -31.83141 -31.70491 -30.11858 -29.91107 -26.92344 -25.78727 -24.17762 -23.30932 -22.09227 -21.56478 -20.60845 -18.96887 -17.77676 -17.02726 -16.57583 -16.12889 -15.72333 -15.62005 -15.20965 -14.82330 -14.54334 -14.29164 -14.11549 -14.06196 -13.70079 -13.37158 -12.98618 -12.91502 -12.68939 -12.56568 -12.31101 -12.12064 -11.98899 -11.92939 -11.74963 -11.67278 -11.49075 -11.32050 -10.54412 -10.46082 -9.79904 -9.59520 -9.32701 -8.56794 -6.28618 0.47059 0.52099 1.54408 1.62223 1.81254 2.59507 2.86822 3.06606 3.22907 3.72381 3.85972 4.03028 4.08934 4.14674 4.18747 4.25987 4.31508 4.37258 4.40703 4.47135 4.62616 4.64627 4.70293 4.75776 4.83133 4.84934 5.00538 5.05721 5.12793 5.17700 5.18516 5.23796 5.35556 5.42675 5.47338 5.61694 5.64493 5.78110 6.00710 6.11655 6.14964 6.19672 6.25419 6.68785 7.50203 8.82111 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.046423 B = 0.003809 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.006549 B = 7349.498112 C = 7518.594249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.039 4.039 3 H 0.074 0.926 4 C 0.061 3.939 5 N -0.514 5.514 6 C 0.046 3.954 7 C -0.102 4.102 8 C 0.014 3.986 9 H -0.007 1.007 10 C -0.600 4.600 11 H 0.045 0.955 12 C -0.032 4.032 13 N -0.939 5.939 14 Si 1.113 2.887 15 H -0.272 1.272 16 H -0.273 1.273 17 H -0.285 1.285 18 C 0.063 3.937 19 C -0.084 4.084 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.125 4.125 24 C -0.132 4.132 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.026 0.974 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.261 0.739 35 H 0.029 0.971 36 H 0.063 0.937 37 H 0.123 0.877 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.498 -6.154 -20.857 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.057 4.057 3 H 0.092 0.908 4 C -0.068 4.068 5 N -0.238 5.238 6 C -0.081 4.081 7 C -0.141 4.141 8 C -0.005 4.005 9 H 0.011 0.989 10 C -0.638 4.638 11 H 0.064 0.936 12 C -0.230 4.230 13 N -0.576 5.576 14 Si 0.935 3.065 15 H -0.197 1.197 16 H -0.198 1.198 17 H -0.211 1.211 18 C -0.065 4.065 19 C -0.084 4.084 20 C -0.145 4.145 21 C -0.144 4.144 22 C -0.150 4.150 23 C -0.143 4.143 24 C -0.150 4.150 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.081 0.919 37 H 0.141 0.859 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.401 -5.389 -19.453 20.234 hybrid contribution 1.500 -0.769 -1.048 1.985 sum 0.099 -6.158 -20.501 21.406 Atomic orbital electron populations 1.21647 0.93386 1.01931 1.01502 1.20011 0.96952 0.98590 0.90189 0.90796 1.22322 0.97333 0.97369 0.89741 1.64667 1.52505 1.05080 1.01572 1.23187 0.95179 0.93372 0.96385 1.22448 0.99177 0.98252 0.94189 1.19659 0.94741 0.92418 0.93730 0.98881 1.22347 1.10893 1.25278 1.05315 0.93642 1.27183 1.00414 0.92490 1.02908 1.70905 1.13393 1.37989 1.35358 0.82976 0.73572 0.76892 0.73035 1.19732 1.19812 1.21078 1.22686 0.98646 0.95358 0.89773 1.19937 0.97810 0.94712 0.95969 1.21187 1.00665 0.94340 0.98330 1.21435 0.97896 1.00831 0.94195 1.21471 0.98473 0.94937 1.00126 1.21430 0.99994 0.95379 0.97489 1.21303 0.98177 1.00537 0.94965 0.92617 0.92442 0.92624 0.95548 0.90748 0.94186 0.89442 0.93846 0.94159 0.92890 0.95271 0.91861 0.85908 0.84293 0.83958 0.84168 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.90 71.98 0.64 -2.53 16 2 C -0.04 -0.98 2.59 -11.54 -0.03 -1.01 16 3 H 0.07 1.90 6.91 -2.39 -0.02 1.89 16 4 C 0.06 1.81 3.83 86.31 0.33 2.14 16 5 N -0.51 -19.07 4.70 -882.99 -4.15 -23.22 16 6 C 0.05 1.73 5.91 86.65 0.51 2.25 16 7 C -0.10 -4.82 5.57 31.80 0.18 -4.64 16 8 C 0.01 0.70 2.54 -10.66 -0.03 0.67 16 9 H -0.01 -0.39 7.95 -2.39 -0.02 -0.40 16 10 C -0.60 -34.31 8.38 25.60 0.21 -34.10 16 11 H 0.05 2.58 7.34 -2.91 -0.02 2.56 16 12 C -0.03 -1.84 5.34 84.66 0.45 -1.39 16 13 N -0.94 -57.55 13.45 21.45 0.29 -57.26 16 14 Si 1.11 50.94 29.90 68.60 2.05 52.99 16 15 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 17 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 18 C 0.06 2.72 6.31 86.45 0.55 3.27 16 19 C -0.08 -1.93 4.78 -19.87 -0.09 -2.02 16 20 C -0.13 -2.71 8.76 22.27 0.20 -2.52 16 21 C -0.13 -2.27 10.05 22.27 0.22 -2.04 16 22 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 23 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 24 C -0.13 -2.75 9.67 22.27 0.22 -2.54 16 25 H 0.05 1.61 7.75 -2.39 -0.02 1.59 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.05 1.31 7.41 -2.39 -0.02 1.29 16 28 H 0.03 0.81 7.83 -2.39 -0.02 0.79 16 29 H 0.07 2.14 7.49 -2.39 -0.02 2.13 16 30 H 0.04 1.42 7.81 -2.39 -0.02 1.40 16 31 H 0.09 2.91 7.67 -2.39 -0.02 2.89 16 32 H 0.04 2.23 7.86 -2.39 -0.02 2.21 16 33 H 0.04 1.95 7.10 -2.39 -0.02 1.93 16 34 H 0.26 15.98 5.65 -92.70 -0.52 15.46 16 35 H 0.03 1.18 7.77 -2.39 -0.02 1.16 16 36 H 0.06 2.83 7.39 -2.39 -0.02 2.82 16 37 H 0.12 2.49 7.16 -2.91 -0.02 2.47 16 38 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 39 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.13 2.37 7.95 -2.91 -0.02 2.34 16 Total: -1.00 -64.43 323.45 3.22 -61.21 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 1.22 Total: 14.70 kcal Atomic # 6 Polarization: -52.22 SS G_CDS: 3.80 Total: -48.41 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -3.86 Total: -80.48 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 2.05 Total: 52.99 kcal Total: -64.43 3.22 -61.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397566003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.014 kcal (2) G-P(sol) polarization free energy of solvation -64.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds