Wall clock time and date at job start Mon Mar 30 2020 06:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.47064 * 2 1 4 4 N 1.46497 * 109.46881 * 120.00219 * 2 1 3 5 5 C 1.39676 * 120.00183 * 274.99820 * 4 2 1 6 6 C 1.39337 * 119.95170 * 359.71932 * 5 4 2 7 7 C 1.38481 * 120.42377 * 179.76031 * 6 5 4 8 8 C 1.37680 * 120.32635 * 0.52406 * 7 6 5 9 9 C 1.40746 * 119.89283 * 359.74120 * 8 7 6 10 10 C 1.41415 * 120.20812 * 179.97438 * 9 8 7 11 11 H 1.07992 * 119.99787 * 204.42755 * 10 9 8 12 12 C 1.39930 * 119.99831 * 24.42454 * 10 9 8 13 13 N 1.30828 * 120.00140 * 16.40248 * 12 10 9 14 14 Si 1.86801 * 120.00013 * 196.40376 * 12 10 9 15 15 H 1.48494 * 109.47237 * 90.00192 * 14 12 10 16 16 H 1.48501 * 109.47006 * 210.00232 * 14 12 10 17 17 H 1.48499 * 109.46690 * 330.00020 * 14 12 10 18 18 C 1.38275 * 119.95461 * 180.02562 * 5 4 2 19 19 C 1.53004 * 109.46997 * 240.00007 * 2 1 3 20 20 H 1.08996 * 115.55216 * 278.51651 * 19 2 1 21 21 C 1.53005 * 117.49880 * 64.18405 * 19 2 1 22 22 C 1.52998 * 117.49721 * 132.84372 * 19 2 1 23 23 C 1.53002 * 117.50010 * 0.02562 * 22 19 2 24 24 C 1.53000 * 117.49801 * 145.02196 * 22 19 2 25 25 H 1.09002 * 109.46938 * 182.34240 * 1 2 3 26 26 H 1.08994 * 109.46725 * 302.34259 * 1 2 3 27 27 H 1.08995 * 109.46842 * 62.34116 * 1 2 3 28 28 H 0.97001 * 120.00009 * 94.99976 * 4 2 1 29 29 H 1.08000 * 119.78273 * 0.02562 * 6 5 4 30 30 H 1.08007 * 119.83269 * 180.26193 * 7 6 5 31 31 H 1.07999 * 120.05375 * 179.76148 * 8 7 6 32 32 H 0.97006 * 120.00051 * 179.97438 * 13 12 10 33 33 H 1.08002 * 120.16173 * 359.95366 * 18 5 4 34 34 H 1.08995 * 117.49836 * 214.97940 * 21 19 2 35 35 H 1.08999 * 117.49342 * 359.97438 * 21 19 2 36 36 H 1.08998 * 109.47176 * 61.97525 * 23 22 19 37 37 H 1.09001 * 109.47251 * 181.97188 * 23 22 19 38 38 H 1.09001 * 109.46606 * 301.97575 * 23 22 19 39 39 H 1.09002 * 109.47261 * 59.99906 * 24 22 19 40 40 H 1.08997 * 109.47365 * 179.97438 * 24 22 19 41 41 H 1.08998 * 109.47245 * 300.00024 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1517 0.0061 2.3993 6 6 1.8257 1.3594 2.4594 7 6 1.9496 2.0585 3.6484 8 6 2.4069 1.4257 4.7825 9 6 2.7453 0.0604 4.7358 10 6 3.2162 -0.5960 5.8965 11 1 3.8311 -1.4791 5.8054 12 6 2.8855 -0.1012 7.1629 13 7 1.9022 0.7515 7.2957 14 14 3.8479 -0.6582 8.6639 15 1 4.9984 0.2550 8.8811 16 1 2.9634 -0.6325 9.8565 17 1 4.3466 -2.0401 8.4472 18 6 2.6132 -0.6467 3.5276 19 6 2.0400 -0.7213 -1.2493 20 1 2.0594 -1.8094 -1.1889 21 6 1.7183 -0.0947 -2.6076 22 6 3.1456 -0.0387 -2.0572 23 6 3.6570 1.3126 -1.5537 24 6 4.1935 -0.9358 -2.7190 25 1 -0.3633 -1.0268 0.0420 26 1 -0.3632 0.5498 0.8682 27 1 -0.3633 0.4770 -0.9102 28 1 2.2490 -1.6318 1.1526 29 1 1.4701 1.8653 1.5740 30 1 1.6901 3.1063 3.6852 31 1 2.5054 1.9761 5.7064 32 1 1.6727 1.0942 8.1737 33 1 2.8702 -1.6946 3.4813 34 1 1.5264 -0.7707 -3.4408 35 1 1.1429 0.8310 -2.6111 36 1 4.0962 1.1889 -0.5638 37 1 4.4119 1.6944 -2.2410 38 1 2.8271 2.0170 -1.4976 39 1 3.7027 -1.6135 -3.4176 40 1 4.9128 -0.3185 -3.2569 41 1 4.7112 -1.5149 -1.9543 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397596203.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:52 Heat of formation + Delta-G solvation = 28.633728 kcal Electronic energy + Delta-G solvation = -19058.061863 eV Core-core repulsion = 16323.511939 eV Total energy + Delta-G solvation = -2734.549925 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.23138 -37.52190 -34.99654 -33.14411 -30.70487 -29.67464 -28.56275 -27.55186 -26.92745 -25.12966 -23.57815 -21.10434 -20.42712 -19.72611 -18.64366 -17.26575 -15.79816 -15.56691 -15.03239 -14.41892 -14.24129 -13.89344 -13.84463 -13.10588 -12.97794 -12.63176 -12.50603 -12.46633 -12.19123 -12.03708 -11.89518 -11.57649 -11.48200 -11.27885 -11.08850 -11.06029 -10.55128 -10.51097 -10.22181 -10.01123 -9.67548 -9.51376 -9.25383 -9.14807 -8.64459 -7.33207 -6.65470 -6.12613 -4.26859 2.89376 3.12316 3.15969 3.27701 3.42363 3.66033 4.00226 4.24651 4.64070 4.73551 4.77958 5.01810 5.06450 5.38803 5.46025 5.62678 5.67849 5.72360 5.74423 5.86309 5.90105 5.91351 5.92914 6.02797 6.16428 6.17041 6.30865 6.39172 6.40079 6.53699 6.65914 7.09387 7.14968 7.16536 7.41317 7.46815 7.85954 7.97404 8.19818 8.32261 8.57634 8.72337 8.85174 9.05290 9.18158 10.29964 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034072 B = 0.004237 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.592009 B = 6606.292941 C = 6847.771729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.184 3.816 3 H 0.080 0.920 4 N -0.754 5.754 5 C 0.228 3.772 6 C -0.302 4.302 7 C -0.076 4.076 8 C -0.200 4.200 9 C 0.141 3.859 10 C -0.464 4.464 11 H 0.075 0.925 12 C 0.077 3.923 13 N -0.794 5.794 14 Si 0.906 3.094 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.263 1.263 18 C -0.290 4.290 19 C -0.148 4.148 20 H 0.101 0.899 21 C -0.168 4.168 22 C -0.124 4.124 23 C -0.116 4.116 24 C -0.114 4.114 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.386 0.614 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.278 0.722 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.691 -0.865 -14.343 14.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.078 3.922 3 H 0.098 0.902 4 N -0.386 5.386 5 C 0.130 3.870 6 C -0.325 4.325 7 C -0.095 4.095 8 C -0.221 4.221 9 C 0.138 3.862 10 C -0.494 4.494 11 H 0.093 0.907 12 C -0.140 4.140 13 N -0.420 5.420 14 Si 0.731 3.269 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.187 1.187 18 C -0.314 4.314 19 C -0.167 4.167 20 H 0.119 0.881 21 C -0.205 4.205 22 C -0.124 4.124 23 C -0.173 4.173 24 C -0.171 4.171 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.219 0.781 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.134 0.866 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.490 -0.587 -14.258 14.279 hybrid contribution 0.280 -0.665 0.711 1.013 sum 0.771 -1.252 -13.547 13.627 Atomic orbital electron populations 1.22257 0.96822 1.01817 1.01407 1.20212 0.92598 0.96443 0.82952 0.90243 1.44454 1.75757 1.11357 1.07046 1.17444 0.93998 0.91025 0.84539 1.19870 1.21394 0.93497 0.97722 1.20442 0.98775 0.97035 0.93228 1.21204 1.08468 0.95077 0.97327 1.17340 0.86702 0.91121 0.91036 1.19560 1.28716 1.11101 0.90068 0.90731 1.25882 0.93644 0.93747 1.00753 1.69861 1.21803 1.24802 1.25499 0.86353 0.80235 0.80144 0.80163 1.19365 1.20424 1.18742 1.20396 1.19128 0.98156 0.93748 1.22669 1.02786 0.99042 0.92179 0.88077 1.23225 0.98138 1.02750 0.96433 1.21604 0.90035 0.97940 1.02819 1.21359 1.00776 0.93799 1.01415 1.21335 0.97589 0.98436 0.99705 0.92977 0.91924 0.92949 0.78149 0.89711 0.89798 0.86648 0.91125 0.89448 0.89056 0.88810 0.91456 0.92494 0.92451 0.92779 0.92306 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.34 37.16 0.35 -2.03 16 2 C 0.18 2.78 2.28 -67.93 -0.15 2.63 16 3 H 0.08 1.29 4.34 -51.93 -0.23 1.06 16 4 N -0.75 -13.69 5.25 -52.22 -0.27 -13.96 16 5 C 0.23 5.18 6.63 -83.86 -0.56 4.63 16 6 C -0.30 -6.92 8.88 -39.08 -0.35 -7.27 16 7 C -0.08 -1.85 10.01 -39.70 -0.40 -2.24 16 8 C -0.20 -5.41 8.70 -38.84 -0.34 -5.74 16 9 C 0.14 3.89 5.58 -106.85 -0.60 3.29 16 10 C -0.46 -12.72 9.06 -37.74 -0.34 -13.06 16 11 H 0.07 1.97 7.90 -52.49 -0.41 1.56 16 12 C 0.08 1.99 5.17 -17.35 -0.09 1.90 16 13 N -0.79 -21.12 10.86 55.55 0.60 -20.52 16 14 Si 0.91 19.15 29.59 -169.99 -5.03 14.12 16 15 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 16 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 17 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 18 C -0.29 -7.34 9.63 -38.68 -0.37 -7.71 16 19 C -0.15 -1.84 4.99 -90.62 -0.45 -2.29 16 20 H 0.10 1.23 8.12 -51.93 -0.42 0.81 16 21 C -0.17 -1.76 9.06 -26.69 -0.24 -2.01 16 22 C -0.12 -1.42 2.70 -154.47 -0.42 -1.84 16 23 C -0.12 -1.40 8.39 37.16 0.31 -1.09 16 24 C -0.11 -1.13 9.85 37.16 0.37 -0.77 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 1.04 7.70 -51.93 -0.40 0.64 16 27 H 0.05 0.64 7.50 -51.93 -0.39 0.25 16 28 H 0.39 6.52 8.59 -40.82 -0.35 6.17 16 29 H 0.08 1.76 6.06 -52.49 -0.32 1.44 16 30 H 0.08 1.84 8.06 -52.48 -0.42 1.42 16 31 H 0.12 3.22 6.09 -52.49 -0.32 2.90 16 32 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 33 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 35 H 0.09 0.96 7.78 -51.93 -0.40 0.56 16 36 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 37 H 0.06 0.59 7.96 -51.93 -0.41 0.18 16 38 H 0.06 0.68 7.26 -51.93 -0.38 0.30 16 39 H 0.05 0.48 7.90 -51.93 -0.41 0.07 16 40 H 0.06 0.53 7.95 -51.93 -0.41 0.12 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 329.28 15.07 4.96 4.96 Total: -1.00 -28.09 329.28 -9.54 -37.63 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -6.52 Total: 11.37 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: -3.28 Total: -33.60 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.33 Total: -34.48 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.09 -9.54 -37.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397596203.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.260 kcal (2) G-P(sol) polarization free energy of solvation -28.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds