Wall clock time and date at job start Mon Mar 30 2020 06:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.47064 * 2 1 4 4 N 1.46497 * 109.46881 * 120.00219 * 2 1 3 5 5 C 1.39676 * 120.00183 * 274.99820 * 4 2 1 6 6 C 1.39337 * 119.95170 * 359.71932 * 5 4 2 7 7 C 1.38481 * 120.42377 * 179.76031 * 6 5 4 8 8 C 1.37680 * 120.32635 * 0.52406 * 7 6 5 9 9 C 1.40746 * 119.89283 * 359.74120 * 8 7 6 10 10 C 1.41415 * 120.20812 * 179.97438 * 9 8 7 11 11 H 1.07992 * 119.99787 * 204.42755 * 10 9 8 12 12 C 1.39930 * 119.99831 * 24.42454 * 10 9 8 13 13 N 1.30828 * 120.00140 * 16.40248 * 12 10 9 14 14 Si 1.86801 * 120.00013 * 196.40376 * 12 10 9 15 15 H 1.48494 * 109.47237 * 90.00192 * 14 12 10 16 16 H 1.48501 * 109.47006 * 210.00232 * 14 12 10 17 17 H 1.48499 * 109.46690 * 330.00020 * 14 12 10 18 18 C 1.38275 * 119.95461 * 180.02562 * 5 4 2 19 19 C 1.53004 * 109.46997 * 240.00007 * 2 1 3 20 20 H 1.08996 * 115.55216 * 278.51651 * 19 2 1 21 21 C 1.53005 * 117.49880 * 64.18405 * 19 2 1 22 22 C 1.52998 * 117.49721 * 132.84372 * 19 2 1 23 23 C 1.53002 * 117.50010 * 0.02562 * 22 19 2 24 24 C 1.53000 * 117.49801 * 145.02196 * 22 19 2 25 25 H 1.09002 * 109.46938 * 182.34240 * 1 2 3 26 26 H 1.08994 * 109.46725 * 302.34259 * 1 2 3 27 27 H 1.08995 * 109.46842 * 62.34116 * 1 2 3 28 28 H 0.97001 * 120.00009 * 94.99976 * 4 2 1 29 29 H 1.08000 * 119.78273 * 0.02562 * 6 5 4 30 30 H 1.08007 * 119.83269 * 180.26193 * 7 6 5 31 31 H 1.07999 * 120.05375 * 179.76148 * 8 7 6 32 32 H 0.97006 * 120.00051 * 179.97438 * 13 12 10 33 33 H 1.08002 * 120.16173 * 359.95366 * 18 5 4 34 34 H 1.08995 * 117.49836 * 214.97940 * 21 19 2 35 35 H 1.08999 * 117.49342 * 359.97438 * 21 19 2 36 36 H 1.08998 * 109.47176 * 61.97525 * 23 22 19 37 37 H 1.09001 * 109.47251 * 181.97188 * 23 22 19 38 38 H 1.09001 * 109.46606 * 301.97575 * 23 22 19 39 39 H 1.09002 * 109.47261 * 59.99906 * 24 22 19 40 40 H 1.08997 * 109.47365 * 179.97438 * 24 22 19 41 41 H 1.08998 * 109.47245 * 300.00024 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1517 0.0061 2.3993 6 6 1.8257 1.3594 2.4594 7 6 1.9496 2.0585 3.6484 8 6 2.4069 1.4257 4.7825 9 6 2.7453 0.0604 4.7358 10 6 3.2162 -0.5960 5.8965 11 1 3.8311 -1.4791 5.8054 12 6 2.8855 -0.1012 7.1629 13 7 1.9022 0.7515 7.2957 14 14 3.8479 -0.6582 8.6639 15 1 4.9984 0.2550 8.8811 16 1 2.9634 -0.6325 9.8565 17 1 4.3466 -2.0401 8.4472 18 6 2.6132 -0.6467 3.5276 19 6 2.0400 -0.7213 -1.2493 20 1 2.0594 -1.8094 -1.1889 21 6 1.7183 -0.0947 -2.6076 22 6 3.1456 -0.0387 -2.0572 23 6 3.6570 1.3126 -1.5537 24 6 4.1935 -0.9358 -2.7190 25 1 -0.3633 -1.0268 0.0420 26 1 -0.3632 0.5498 0.8682 27 1 -0.3633 0.4770 -0.9102 28 1 2.2490 -1.6318 1.1526 29 1 1.4701 1.8653 1.5740 30 1 1.6901 3.1063 3.6852 31 1 2.5054 1.9761 5.7064 32 1 1.6727 1.0942 8.1737 33 1 2.8702 -1.6946 3.4813 34 1 1.5264 -0.7707 -3.4408 35 1 1.1429 0.8310 -2.6111 36 1 4.0962 1.1889 -0.5638 37 1 4.4119 1.6944 -2.2410 38 1 2.8271 2.0170 -1.4976 39 1 3.7027 -1.6135 -3.4176 40 1 4.9128 -0.3185 -3.2569 41 1 4.7112 -1.5149 -1.9543 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397596203.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:51 Heat of formation + Delta-G solvation = 15.187966 kcal Electronic energy + Delta-G solvation = -19058.644915 eV Core-core repulsion = 16323.511939 eV Total energy + Delta-G solvation = -2735.132977 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.39310 -39.19125 -36.60223 -34.94559 -32.16101 -31.59310 -29.60220 -28.60879 -28.37377 -27.10508 -24.76471 -22.85156 -22.11386 -21.05148 -19.70477 -19.11545 -17.40672 -17.05124 -16.61537 -16.24586 -15.49449 -15.17623 -14.85989 -14.59994 -14.42861 -14.21566 -13.91836 -13.73219 -13.41296 -13.34365 -13.16289 -13.01187 -12.79624 -12.68472 -12.59568 -12.45172 -12.15712 -12.05127 -11.64523 -11.49527 -11.16315 -11.08795 -10.88192 -10.61090 -10.20586 -9.32459 -8.58762 -7.89719 -6.32201 1.05611 1.36348 1.39397 1.52160 1.60700 2.23103 2.62388 2.82220 2.96437 3.66319 3.83150 3.88546 4.06375 4.20707 4.29296 4.37731 4.50946 4.60370 4.74224 4.76235 4.78952 4.82861 4.93488 5.02910 5.05976 5.06901 5.10808 5.14988 5.17653 5.24002 5.28462 5.32811 5.42556 5.45077 5.49222 5.62634 5.97972 6.04436 6.21857 6.34138 6.65481 6.92349 7.03600 7.08469 7.28124 8.38864 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034072 B = 0.004237 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.592009 B = 6606.292941 C = 6847.771729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.182 3.818 3 H 0.070 0.930 4 N -0.745 5.745 5 C 0.240 3.760 6 C -0.302 4.302 7 C -0.076 4.076 8 C -0.234 4.234 9 C 0.113 3.887 10 C -0.503 4.503 11 H 0.071 0.929 12 C 0.035 3.965 13 N -0.825 5.825 14 Si 0.983 3.017 15 H -0.262 1.262 16 H -0.267 1.267 17 H -0.259 1.259 18 C -0.314 4.314 19 C -0.161 4.161 20 H 0.105 0.895 21 C -0.146 4.146 22 C -0.130 4.130 23 C -0.116 4.116 24 C -0.112 4.112 25 H 0.054 0.946 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.392 0.608 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.286 0.714 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 -1.138 -16.239 16.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.077 3.923 3 H 0.088 0.912 4 N -0.376 5.376 5 C 0.138 3.862 6 C -0.325 4.325 7 C -0.095 4.095 8 C -0.254 4.254 9 C 0.110 3.890 10 C -0.533 4.533 11 H 0.089 0.911 12 C -0.179 4.179 13 N -0.451 5.451 14 Si 0.804 3.196 15 H -0.187 1.187 16 H -0.191 1.191 17 H -0.183 1.183 18 C -0.339 4.339 19 C -0.180 4.180 20 H 0.123 0.877 21 C -0.184 4.184 22 C -0.130 4.130 23 C -0.173 4.173 24 C -0.169 4.169 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.098 0.902 28 H 0.226 0.774 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.358 -0.871 -16.209 16.236 hybrid contribution 0.264 -0.553 1.128 1.283 sum 0.622 -1.423 -15.081 15.161 Atomic orbital electron populations 1.22201 0.96021 1.01911 1.01672 1.20369 0.93101 0.96042 0.82769 0.91162 1.44566 1.74717 1.11680 1.06620 1.17489 0.92062 0.91193 0.85436 1.20136 1.20618 0.93648 0.98050 1.20728 0.97593 0.98225 0.92940 1.21131 1.11361 0.95226 0.97712 1.17701 0.87381 0.91781 0.92153 1.19813 1.30155 1.11921 0.91402 0.91118 1.26759 0.94144 0.93535 1.03478 1.69922 1.22825 1.25616 1.26761 0.85204 0.78696 0.79699 0.76049 1.18661 1.19125 1.18328 1.20514 1.20603 0.98393 0.94341 1.22536 1.04487 0.99068 0.91860 0.87654 1.23316 0.96847 1.02899 0.95292 1.21708 0.90938 0.97588 1.02787 1.21344 1.01162 0.94510 1.00315 1.21342 0.97452 0.98475 0.99661 0.92733 0.94364 0.90189 0.77401 0.87237 0.87574 0.88435 0.90330 0.89386 0.87028 0.88203 0.94201 0.90958 0.92366 0.91349 0.91382 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 9.34 71.98 0.67 -3.60 16 2 C 0.18 5.18 2.28 45.00 0.10 5.28 16 3 H 0.07 2.15 4.34 -2.39 -0.01 2.14 16 4 N -0.75 -26.48 5.25 -319.13 -1.67 -28.15 16 5 C 0.24 10.91 6.63 38.16 0.25 11.17 16 6 C -0.30 -13.72 8.88 22.59 0.20 -13.52 16 7 C -0.08 -3.75 10.01 22.20 0.22 -3.52 16 8 C -0.23 -13.10 8.70 22.75 0.20 -12.90 16 9 C 0.11 6.48 5.58 -21.31 -0.12 6.36 16 10 C -0.50 -28.69 9.06 23.46 0.21 -28.48 16 11 H 0.07 3.91 7.90 -2.91 -0.02 3.89 16 12 C 0.04 1.87 5.17 85.25 0.44 2.31 16 13 N -0.83 -45.18 10.86 21.82 0.24 -44.95 16 14 Si 0.98 39.83 29.59 68.60 2.03 41.86 16 15 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 16 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 17 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 18 C -0.31 -16.38 9.63 22.86 0.22 -16.16 16 19 C -0.16 -3.58 4.99 -10.79 -0.05 -3.63 16 20 H 0.11 2.29 8.12 -2.39 -0.02 2.27 16 21 C -0.15 -2.52 9.06 30.62 0.28 -2.24 16 22 C -0.13 -2.64 2.70 -52.16 -0.14 -2.78 16 23 C -0.12 -2.59 8.39 71.98 0.60 -1.99 16 24 C -0.11 -1.95 9.85 71.98 0.71 -1.24 16 25 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.04 1.20 7.70 -2.39 -0.02 1.18 16 27 H 0.08 1.70 7.50 -2.39 -0.02 1.68 16 28 H 0.39 12.98 8.59 -92.71 -0.80 12.18 16 29 H 0.11 4.39 6.06 -2.91 -0.02 4.37 16 30 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 31 H 0.10 5.71 6.09 -2.91 -0.02 5.69 16 32 H 0.29 14.11 8.30 -92.70 -0.77 13.34 16 33 H 0.09 4.42 8.06 -2.91 -0.02 4.40 16 34 H 0.11 1.53 8.05 -2.39 -0.02 1.51 16 35 H 0.10 1.63 7.78 -2.39 -0.02 1.62 16 36 H 0.04 1.09 8.12 -2.39 -0.02 1.08 16 37 H 0.07 1.36 7.96 -2.39 -0.02 1.34 16 38 H 0.06 1.26 7.26 -2.39 -0.02 1.24 16 39 H 0.07 0.99 7.90 -2.39 -0.02 0.97 16 40 H 0.07 1.05 7.95 -2.39 -0.02 1.03 16 41 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -62.49 329.28 4.60 -57.88 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: 0.21 Total: 38.31 kcal Atomic # 6 Polarization: -68.75 SS G_CDS: 3.80 Total: -64.96 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -1.44 Total: -73.10 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -62.49 4.60 -57.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397596203.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.070 kcal (2) G-P(sol) polarization free energy of solvation -62.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds