Wall clock time and date at job start Mon Mar 30 2020 06:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47317 * 2 1 4 4 N 1.46503 * 109.46899 * 120.00208 * 2 1 3 5 5 C 1.39684 * 119.99560 * 268.42329 * 4 2 1 6 6 C 1.39341 * 119.95415 * 0.25924 * 5 4 2 7 7 C 1.38481 * 120.42539 * 180.30056 * 6 5 4 8 8 C 1.37688 * 120.32348 * 359.72257 * 7 6 5 9 9 C 1.40752 * 119.89189 * 0.02562 * 8 7 6 10 10 C 1.41406 * 120.20559 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00300 * 24.57644 * 10 9 8 12 12 C 1.39935 * 120.00182 * 204.57718 * 10 9 8 13 13 N 1.30832 * 119.99431 * 15.93000 * 12 10 9 14 14 Si 1.86798 * 120.00130 * 195.93476 * 12 10 9 15 15 H 1.48491 * 109.47333 * 89.99984 * 14 12 10 16 16 H 1.48504 * 109.46935 * 209.99827 * 14 12 10 17 17 H 1.48497 * 109.46907 * 329.99674 * 14 12 10 18 18 C 1.38274 * 119.95136 * 180.02562 * 5 4 2 19 19 C 1.53006 * 109.46963 * 239.99794 * 2 1 3 20 20 H 1.08991 * 115.55051 * 28.68936 * 19 2 1 21 21 C 1.52998 * 117.49710 * 242.97405 * 19 2 1 22 22 C 1.52997 * 60.00311 * 252.51789 * 21 19 2 23 23 C 1.53005 * 117.49829 * 252.51606 * 22 21 19 24 24 C 1.52996 * 117.50189 * 107.49150 * 22 21 19 25 25 H 1.09003 * 109.47011 * 184.05120 * 1 2 3 26 26 H 1.08991 * 109.47074 * 304.05530 * 1 2 3 27 27 H 1.08998 * 109.46908 * 64.05868 * 1 2 3 28 28 H 0.96998 * 120.00584 * 88.43002 * 4 2 1 29 29 H 1.07995 * 119.79015 * 0.02562 * 6 5 4 30 30 H 1.07999 * 119.83780 * 179.74072 * 7 6 5 31 31 H 1.08002 * 120.05514 * 179.97438 * 8 7 6 32 32 H 0.97002 * 119.99564 * 180.02562 * 13 12 10 33 33 H 1.08004 * 120.16160 * 359.97438 * 18 5 4 34 34 H 1.09006 * 117.50155 * 0.02562 * 21 19 2 35 35 H 1.08999 * 117.49521 * 145.02292 * 21 19 2 36 36 H 1.08999 * 109.47209 * 128.61833 * 23 22 21 37 37 H 1.08994 * 109.46944 * 248.62032 * 23 22 21 38 38 H 1.09008 * 109.46699 * 8.61762 * 23 22 21 39 39 H 1.09004 * 109.47355 * 357.56962 * 24 22 21 40 40 H 1.09004 * 109.46894 * 117.56594 * 24 22 21 41 41 H 1.08994 * 109.47388 * 237.57018 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.2825 0.0329 2.3614 6 6 2.0760 1.4107 2.3867 7 6 2.3406 2.1386 3.5347 8 6 2.8055 1.5071 4.6665 9 6 3.0138 0.1151 4.6576 10 6 3.4916 -0.5401 5.8160 11 1 3.3298 -0.1020 6.7898 12 6 4.1742 -1.7563 5.7007 13 7 4.6444 -2.1349 4.5400 14 14 4.4139 -2.8390 7.2040 15 1 3.2697 -3.7775 7.3256 16 1 5.6745 -3.6110 7.0619 17 1 4.4883 -1.9890 8.4193 18 6 2.7438 -0.6198 3.4897 19 6 2.0400 -0.7213 -1.2493 20 1 1.3834 -0.6779 -2.1181 21 6 2.8569 -1.9985 -1.0435 22 6 3.5489 -0.7136 -1.5028 23 6 4.0205 -0.6462 -2.9568 24 6 4.4321 0.0147 -0.4879 25 1 -0.3633 -1.0251 0.0726 26 1 -0.3633 0.5754 0.8513 27 1 -0.3633 0.4496 -0.9241 28 1 2.1583 -1.6503 1.1790 29 1 1.7116 1.9149 1.5039 30 1 2.1812 3.2067 3.5424 31 1 3.0108 2.0790 5.5593 32 1 5.1172 -2.9781 4.4600 33 1 2.9002 -1.6883 3.4727 34 1 3.0306 -2.3252 -0.0182 35 1 2.7376 -2.7958 -1.7771 36 1 3.6462 0.2677 -3.4182 37 1 5.1100 -0.6479 -2.9858 38 1 3.6411 -1.5104 -3.5023 39 1 4.3926 -0.5067 0.4685 40 1 5.4605 0.0339 -0.8489 41 1 4.0728 1.0358 -0.3601 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397596210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:57 Heat of formation + Delta-G solvation = 36.753298 kcal Electronic energy + Delta-G solvation = -19593.235176 eV Core-core repulsion = 16859.037342 eV Total energy + Delta-G solvation = -2734.197834 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.31371 -37.34794 -34.69043 -33.24188 -30.82886 -29.40070 -28.59203 -27.37388 -26.80411 -25.14024 -23.50774 -21.11498 -20.65823 -19.23683 -18.54629 -17.14384 -16.07249 -15.15056 -14.90766 -14.73923 -14.21251 -13.86439 -13.58929 -13.03356 -12.82999 -12.59662 -12.44378 -12.15987 -12.08099 -11.92804 -11.62787 -11.57692 -11.33285 -11.11479 -11.03529 -10.96673 -10.60776 -10.48589 -10.34612 -9.73473 -9.55250 -9.37087 -9.34213 -9.11715 -8.68140 -7.24983 -6.67339 -6.08180 -4.27326 2.90427 3.12185 3.15863 3.28496 3.38809 3.84044 4.00953 4.40267 4.76060 4.77690 4.96770 5.05331 5.28078 5.41984 5.63130 5.72093 5.76807 5.84653 5.87802 5.95086 6.02786 6.10236 6.23107 6.27780 6.28459 6.32329 6.35374 6.40723 6.55562 6.70709 6.80369 6.94582 7.17345 7.19554 7.45520 7.50700 7.88341 8.01721 8.17499 8.23576 8.55196 8.78760 8.90526 9.06684 9.18013 10.30507 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.021177 B = 0.005910 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.871797 B = 4736.943553 C = 5372.168443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.184 3.816 3 H 0.081 0.919 4 N -0.752 5.752 5 C 0.220 3.780 6 C -0.299 4.299 7 C -0.067 4.067 8 C -0.259 4.259 9 C 0.139 3.861 10 C -0.464 4.464 11 H 0.074 0.926 12 C 0.077 3.923 13 N -0.794 5.794 14 Si 0.904 3.096 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.263 1.263 18 C -0.232 4.232 19 C -0.155 4.155 20 H 0.103 0.897 21 C -0.173 4.173 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.113 4.113 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.388 0.612 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.276 0.724 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.048 0.952 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.683 -0.265 -11.098 11.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.078 3.922 3 H 0.099 0.901 4 N -0.387 5.387 5 C 0.121 3.879 6 C -0.321 4.321 7 C -0.086 4.086 8 C -0.279 4.279 9 C 0.135 3.865 10 C -0.494 4.494 11 H 0.093 0.907 12 C -0.140 4.140 13 N -0.420 5.420 14 Si 0.729 3.271 15 H -0.195 1.195 16 H -0.205 1.205 17 H -0.187 1.187 18 C -0.256 4.256 19 C -0.174 4.174 20 H 0.121 0.879 21 C -0.210 4.210 22 C -0.119 4.119 23 C -0.170 4.170 24 C -0.170 4.170 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.225 0.775 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.136 0.864 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.586 -0.305 -11.312 11.608 hybrid contribution 0.185 -0.921 0.585 1.106 sum -2.401 -1.225 -10.727 11.061 Atomic orbital electron populations 1.22245 0.96841 1.01732 1.01187 1.20070 0.92324 0.96441 0.83404 0.90110 1.44761 1.75817 1.08589 1.09511 1.17629 0.93743 0.90679 0.85817 1.19914 1.20959 0.92629 0.98643 1.20280 0.98158 0.96647 0.93504 1.20851 1.14604 0.94761 0.97715 1.17318 0.86651 0.90258 0.92228 1.19561 1.31699 1.03884 0.94303 0.90736 1.25854 0.93482 0.97697 0.96923 1.69859 1.26561 1.20507 1.25103 0.86382 0.78164 0.80137 0.82380 1.19480 1.20493 1.18747 1.20765 1.12150 0.99686 0.92994 1.22880 0.93492 1.01463 0.99577 0.87867 1.23235 1.04336 0.90898 1.02542 1.21541 0.93656 1.00712 0.96036 1.21356 1.00996 1.01204 0.93426 1.21333 0.97098 1.00196 0.98363 0.92934 0.92172 0.93041 0.77524 0.89602 0.89829 0.89572 0.91331 0.86437 0.88071 0.89476 0.92538 0.92302 0.92938 0.90695 0.93252 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.47 37.16 0.35 -1.93 16 2 C 0.18 2.85 2.07 -67.92 -0.14 2.71 16 3 H 0.08 1.35 5.50 -51.93 -0.29 1.07 16 4 N -0.75 -13.87 3.56 -52.21 -0.19 -14.06 16 5 C 0.22 4.99 6.61 -83.86 -0.55 4.44 16 6 C -0.30 -6.69 9.22 -39.08 -0.36 -7.05 16 7 C -0.07 -1.55 10.02 -39.69 -0.40 -1.95 16 8 C -0.26 -6.57 9.79 -38.83 -0.38 -6.96 16 9 C 0.14 3.77 5.58 -106.85 -0.60 3.17 16 10 C -0.46 -12.61 9.06 -37.74 -0.34 -12.95 16 11 H 0.07 1.96 7.89 -52.48 -0.41 1.55 16 12 C 0.08 1.97 5.18 -17.34 -0.09 1.88 16 13 N -0.79 -20.66 10.85 55.55 0.60 -20.06 16 14 Si 0.90 19.08 29.59 -169.99 -5.03 14.05 16 15 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 16 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 18 C -0.23 -6.00 8.53 -38.68 -0.33 -6.33 16 19 C -0.16 -2.06 5.46 -90.61 -0.49 -2.56 16 20 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 21 C -0.17 -2.32 9.01 -26.73 -0.24 -2.56 16 22 C -0.12 -1.61 2.70 -154.51 -0.42 -2.02 16 23 C -0.11 -1.24 9.84 37.16 0.37 -0.88 16 24 C -0.11 -1.78 8.74 37.16 0.32 -1.45 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.39 7.05 6.18 -40.82 -0.25 6.80 16 29 H 0.09 1.75 6.09 -52.49 -0.32 1.43 16 30 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 32 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 33 H 0.12 3.16 6.09 -52.48 -0.32 2.84 16 34 H 0.10 1.53 5.71 -51.93 -0.30 1.23 16 35 H 0.09 1.03 8.05 -51.93 -0.42 0.61 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.63 7.87 -51.93 -0.41 0.22 16 38 H 0.05 0.52 7.90 -51.92 -0.41 0.11 16 39 H 0.07 1.40 6.97 -51.93 -0.36 1.04 16 40 H 0.05 0.71 7.84 -51.93 -0.41 0.30 16 41 H 0.06 0.93 7.52 -51.93 -0.39 0.54 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -27.03 325.25 -9.39 -36.42 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -6.37 Total: 13.18 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: -3.30 Total: -34.44 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.42 Total: -34.11 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.03 -9.39 -36.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397596210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.174 kcal (2) G-P(sol) polarization free energy of solvation -27.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds