Wall clock time and date at job start Mon Mar 30 2020 06:30:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09000 * 109.47317 * 2 1
4 4 N 1.46503 * 109.46899 * 120.00208 * 2 1 3
5 5 C 1.39684 * 119.99560 * 268.42329 * 4 2 1
6 6 C 1.39341 * 119.95415 * 0.25924 * 5 4 2
7 7 C 1.38481 * 120.42539 * 180.30056 * 6 5 4
8 8 C 1.37688 * 120.32348 * 359.72257 * 7 6 5
9 9 C 1.40752 * 119.89189 * 0.02562 * 8 7 6
10 10 C 1.41406 * 120.20559 * 179.97438 * 9 8 7
11 11 H 1.08003 * 120.00300 * 24.57644 * 10 9 8
12 12 C 1.39935 * 120.00182 * 204.57718 * 10 9 8
13 13 N 1.30832 * 119.99431 * 15.93000 * 12 10 9
14 14 Si 1.86798 * 120.00130 * 195.93476 * 12 10 9
15 15 H 1.48491 * 109.47333 * 89.99984 * 14 12 10
16 16 H 1.48504 * 109.46935 * 209.99827 * 14 12 10
17 17 H 1.48497 * 109.46907 * 329.99674 * 14 12 10
18 18 C 1.38274 * 119.95136 * 180.02562 * 5 4 2
19 19 C 1.53006 * 109.46963 * 239.99794 * 2 1 3
20 20 H 1.08991 * 115.55051 * 28.68936 * 19 2 1
21 21 C 1.52998 * 117.49710 * 242.97405 * 19 2 1
22 22 C 1.52997 * 60.00311 * 252.51789 * 21 19 2
23 23 C 1.53005 * 117.49829 * 252.51606 * 22 21 19
24 24 C 1.52996 * 117.50189 * 107.49150 * 22 21 19
25 25 H 1.09003 * 109.47011 * 184.05120 * 1 2 3
26 26 H 1.08991 * 109.47074 * 304.05530 * 1 2 3
27 27 H 1.08998 * 109.46908 * 64.05868 * 1 2 3
28 28 H 0.96998 * 120.00584 * 88.43002 * 4 2 1
29 29 H 1.07995 * 119.79015 * 0.02562 * 6 5 4
30 30 H 1.07999 * 119.83780 * 179.74072 * 7 6 5
31 31 H 1.08002 * 120.05514 * 179.97438 * 8 7 6
32 32 H 0.97002 * 119.99564 * 180.02562 * 13 12 10
33 33 H 1.08004 * 120.16160 * 359.97438 * 18 5 4
34 34 H 1.09006 * 117.50155 * 0.02562 * 21 19 2
35 35 H 1.08999 * 117.49521 * 145.02292 * 21 19 2
36 36 H 1.08999 * 109.47209 * 128.61833 * 23 22 21
37 37 H 1.08994 * 109.46944 * 248.62032 * 23 22 21
38 38 H 1.09008 * 109.46699 * 8.61762 * 23 22 21
39 39 H 1.09004 * 109.47355 * 357.56962 * 24 22 21
40 40 H 1.09004 * 109.46894 * 117.56594 * 24 22 21
41 41 H 1.08994 * 109.47388 * 237.57018 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0183 -0.6907 1.1962
5 6 2.2825 0.0329 2.3614
6 6 2.0760 1.4107 2.3867
7 6 2.3406 2.1386 3.5347
8 6 2.8055 1.5071 4.6665
9 6 3.0138 0.1151 4.6576
10 6 3.4916 -0.5401 5.8160
11 1 3.3298 -0.1020 6.7898
12 6 4.1742 -1.7563 5.7007
13 7 4.6444 -2.1349 4.5400
14 14 4.4139 -2.8390 7.2040
15 1 3.2697 -3.7775 7.3256
16 1 5.6745 -3.6110 7.0619
17 1 4.4883 -1.9890 8.4193
18 6 2.7438 -0.6198 3.4897
19 6 2.0400 -0.7213 -1.2493
20 1 1.3834 -0.6779 -2.1181
21 6 2.8569 -1.9985 -1.0435
22 6 3.5489 -0.7136 -1.5028
23 6 4.0205 -0.6462 -2.9568
24 6 4.4321 0.0147 -0.4879
25 1 -0.3633 -1.0251 0.0726
26 1 -0.3633 0.5754 0.8513
27 1 -0.3633 0.4496 -0.9241
28 1 2.1583 -1.6503 1.1790
29 1 1.7116 1.9149 1.5039
30 1 2.1812 3.2067 3.5424
31 1 3.0108 2.0790 5.5593
32 1 5.1172 -2.9781 4.4600
33 1 2.9002 -1.6883 3.4727
34 1 3.0306 -2.3252 -0.0182
35 1 2.7376 -2.7958 -1.7771
36 1 3.6462 0.2677 -3.4182
37 1 5.1100 -0.6479 -2.9858
38 1 3.6411 -1.5104 -3.5023
39 1 4.3926 -0.5067 0.4685
40 1 5.4605 0.0339 -0.8489
41 1 4.0728 1.0358 -0.3601
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000397596210.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:30:57
Heat of formation + Delta-G solvation = 36.753298 kcal
Electronic energy + Delta-G solvation = -19593.235176 eV
Core-core repulsion = 16859.037342 eV
Total energy + Delta-G solvation = -2734.197834 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 259.163 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-39.31371 -37.34794 -34.69043 -33.24188 -30.82886 -29.40070 -28.59203 -27.37388
-26.80411 -25.14024 -23.50774 -21.11498 -20.65823 -19.23683 -18.54629 -17.14384
-16.07249 -15.15056 -14.90766 -14.73923 -14.21251 -13.86439 -13.58929 -13.03356
-12.82999 -12.59662 -12.44378 -12.15987 -12.08099 -11.92804 -11.62787 -11.57692
-11.33285 -11.11479 -11.03529 -10.96673 -10.60776 -10.48589 -10.34612 -9.73473
-9.55250 -9.37087 -9.34213 -9.11715 -8.68140 -7.24983 -6.67339 -6.08180
-4.27326 2.90427 3.12185 3.15863 3.28496 3.38809 3.84044 4.00953
4.40267 4.76060 4.77690 4.96770 5.05331 5.28078 5.41984 5.63130
5.72093 5.76807 5.84653 5.87802 5.95086 6.02786 6.10236 6.23107
6.27780 6.28459 6.32329 6.35374 6.40723 6.55562 6.70709 6.80369
6.94582 7.17345 7.19554 7.45520 7.50700 7.88341 8.01721 8.17499
8.23576 8.55196 8.78760 8.90526 9.06684 9.18013 10.30507
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.021177 B = 0.005910 C = 0.005211
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1321.871797 B = 4736.943553 C = 5372.168443
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.184 3.816
3 H 0.081 0.919
4 N -0.752 5.752
5 C 0.220 3.780
6 C -0.299 4.299
7 C -0.067 4.067
8 C -0.259 4.259
9 C 0.139 3.861
10 C -0.464 4.464
11 H 0.074 0.926
12 C 0.077 3.923
13 N -0.794 5.794
14 Si 0.904 3.096
15 H -0.270 1.270
16 H -0.280 1.280
17 H -0.263 1.263
18 C -0.232 4.232
19 C -0.155 4.155
20 H 0.103 0.897
21 C -0.173 4.173
22 C -0.119 4.119
23 C -0.113 4.113
24 C -0.113 4.113
25 H 0.052 0.948
26 H 0.059 0.941
27 H 0.051 0.949
28 H 0.388 0.612
29 H 0.086 0.914
30 H 0.083 0.917
31 H 0.086 0.914
32 H 0.276 0.724
33 H 0.118 0.882
34 H 0.101 0.899
35 H 0.087 0.913
36 H 0.056 0.944
37 H 0.058 0.942
38 H 0.052 0.948
39 H 0.074 0.926
40 H 0.048 0.952
41 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.683 -0.265 -11.098 11.421
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.078 3.922
3 H 0.099 0.901
4 N -0.387 5.387
5 C 0.121 3.879
6 C -0.321 4.321
7 C -0.086 4.086
8 C -0.279 4.279
9 C 0.135 3.865
10 C -0.494 4.494
11 H 0.093 0.907
12 C -0.140 4.140
13 N -0.420 5.420
14 Si 0.729 3.271
15 H -0.195 1.195
16 H -0.205 1.205
17 H -0.187 1.187
18 C -0.256 4.256
19 C -0.174 4.174
20 H 0.121 0.879
21 C -0.210 4.210
22 C -0.119 4.119
23 C -0.170 4.170
24 C -0.170 4.170
25 H 0.071 0.929
26 H 0.078 0.922
27 H 0.070 0.930
28 H 0.225 0.775
29 H 0.104 0.896
30 H 0.102 0.898
31 H 0.104 0.896
32 H 0.087 0.913
33 H 0.136 0.864
34 H 0.119 0.881
35 H 0.105 0.895
36 H 0.075 0.925
37 H 0.077 0.923
38 H 0.071 0.929
39 H 0.093 0.907
40 H 0.067 0.933
41 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -2.586 -0.305 -11.312 11.608
hybrid contribution 0.185 -0.921 0.585 1.106
sum -2.401 -1.225 -10.727 11.061
Atomic orbital electron populations
1.22245 0.96841 1.01732 1.01187 1.20070 0.92324 0.96441 0.83404
0.90110 1.44761 1.75817 1.08589 1.09511 1.17629 0.93743 0.90679
0.85817 1.19914 1.20959 0.92629 0.98643 1.20280 0.98158 0.96647
0.93504 1.20851 1.14604 0.94761 0.97715 1.17318 0.86651 0.90258
0.92228 1.19561 1.31699 1.03884 0.94303 0.90736 1.25854 0.93482
0.97697 0.96923 1.69859 1.26561 1.20507 1.25103 0.86382 0.78164
0.80137 0.82380 1.19480 1.20493 1.18747 1.20765 1.12150 0.99686
0.92994 1.22880 0.93492 1.01463 0.99577 0.87867 1.23235 1.04336
0.90898 1.02542 1.21541 0.93656 1.00712 0.96036 1.21356 1.00996
1.01204 0.93426 1.21333 0.97098 1.00196 0.98363 0.92934 0.92172
0.93041 0.77524 0.89602 0.89829 0.89572 0.91331 0.86437 0.88071
0.89476 0.92538 0.92302 0.92938 0.90695 0.93252 0.92513
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.28 9.47 37.16 0.35 -1.93 16
2 C 0.18 2.85 2.07 -67.92 -0.14 2.71 16
3 H 0.08 1.35 5.50 -51.93 -0.29 1.07 16
4 N -0.75 -13.87 3.56 -52.21 -0.19 -14.06 16
5 C 0.22 4.99 6.61 -83.86 -0.55 4.44 16
6 C -0.30 -6.69 9.22 -39.08 -0.36 -7.05 16
7 C -0.07 -1.55 10.02 -39.69 -0.40 -1.95 16
8 C -0.26 -6.57 9.79 -38.83 -0.38 -6.96 16
9 C 0.14 3.77 5.58 -106.85 -0.60 3.17 16
10 C -0.46 -12.61 9.06 -37.74 -0.34 -12.95 16
11 H 0.07 1.96 7.89 -52.48 -0.41 1.55 16
12 C 0.08 1.97 5.18 -17.34 -0.09 1.88 16
13 N -0.79 -20.66 10.85 55.55 0.60 -20.06 16
14 Si 0.90 19.08 29.59 -169.99 -5.03 14.05 16
15 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16
16 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16
17 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16
18 C -0.23 -6.00 8.53 -38.68 -0.33 -6.33 16
19 C -0.16 -2.06 5.46 -90.61 -0.49 -2.56 16
20 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16
21 C -0.17 -2.32 9.01 -26.73 -0.24 -2.56 16
22 C -0.12 -1.61 2.70 -154.51 -0.42 -2.02 16
23 C -0.11 -1.24 9.84 37.16 0.37 -0.88 16
24 C -0.11 -1.78 8.74 37.16 0.32 -1.45 16
25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
28 H 0.39 7.05 6.18 -40.82 -0.25 6.80 16
29 H 0.09 1.75 6.09 -52.49 -0.32 1.43 16
30 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16
31 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16
32 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16
33 H 0.12 3.16 6.09 -52.48 -0.32 2.84 16
34 H 0.10 1.53 5.71 -51.93 -0.30 1.23 16
35 H 0.09 1.03 8.05 -51.93 -0.42 0.61 16
36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
37 H 0.06 0.63 7.87 -51.93 -0.41 0.22 16
38 H 0.05 0.52 7.90 -51.92 -0.41 0.11 16
39 H 0.07 1.40 6.97 -51.93 -0.36 1.04 16
40 H 0.05 0.71 7.84 -51.93 -0.41 0.30 16
41 H 0.06 0.93 7.52 -51.93 -0.39 0.54 16
LS Contribution 325.25 15.07 4.90 4.90
Total: -1.00 -27.03 325.25 -9.39 -36.42
By element:
Atomic # 1 Polarization: 19.56 SS G_CDS: -6.37 Total: 13.18 kcal
Atomic # 6 Polarization: -31.14 SS G_CDS: -3.30 Total: -34.44 kcal
Atomic # 7 Polarization: -34.53 SS G_CDS: 0.42 Total: -34.11 kcal
Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal
Total LS contribution 4.90 Total: 4.90 kcal
Total: -27.03 -9.39 -36.42 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397596210.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.174 kcal
(2) G-P(sol) polarization free energy of solvation -27.034 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.140 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.421 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.753 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds