Wall clock time and date at job start Mon Mar 30 2020 06:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47317 * 2 1 4 4 N 1.46503 * 109.46899 * 120.00208 * 2 1 3 5 5 C 1.39684 * 119.99560 * 268.42329 * 4 2 1 6 6 C 1.39341 * 119.95415 * 0.25924 * 5 4 2 7 7 C 1.38481 * 120.42539 * 180.30056 * 6 5 4 8 8 C 1.37688 * 120.32348 * 359.72257 * 7 6 5 9 9 C 1.40752 * 119.89189 * 0.02562 * 8 7 6 10 10 C 1.41406 * 120.20559 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00300 * 24.57644 * 10 9 8 12 12 C 1.39935 * 120.00182 * 204.57718 * 10 9 8 13 13 N 1.30832 * 119.99431 * 15.93000 * 12 10 9 14 14 Si 1.86798 * 120.00130 * 195.93476 * 12 10 9 15 15 H 1.48491 * 109.47333 * 89.99984 * 14 12 10 16 16 H 1.48504 * 109.46935 * 209.99827 * 14 12 10 17 17 H 1.48497 * 109.46907 * 329.99674 * 14 12 10 18 18 C 1.38274 * 119.95136 * 180.02562 * 5 4 2 19 19 C 1.53006 * 109.46963 * 239.99794 * 2 1 3 20 20 H 1.08991 * 115.55051 * 28.68936 * 19 2 1 21 21 C 1.52998 * 117.49710 * 242.97405 * 19 2 1 22 22 C 1.52997 * 60.00311 * 252.51789 * 21 19 2 23 23 C 1.53005 * 117.49829 * 252.51606 * 22 21 19 24 24 C 1.52996 * 117.50189 * 107.49150 * 22 21 19 25 25 H 1.09003 * 109.47011 * 184.05120 * 1 2 3 26 26 H 1.08991 * 109.47074 * 304.05530 * 1 2 3 27 27 H 1.08998 * 109.46908 * 64.05868 * 1 2 3 28 28 H 0.96998 * 120.00584 * 88.43002 * 4 2 1 29 29 H 1.07995 * 119.79015 * 0.02562 * 6 5 4 30 30 H 1.07999 * 119.83780 * 179.74072 * 7 6 5 31 31 H 1.08002 * 120.05514 * 179.97438 * 8 7 6 32 32 H 0.97002 * 119.99564 * 180.02562 * 13 12 10 33 33 H 1.08004 * 120.16160 * 359.97438 * 18 5 4 34 34 H 1.09006 * 117.50155 * 0.02562 * 21 19 2 35 35 H 1.08999 * 117.49521 * 145.02292 * 21 19 2 36 36 H 1.08999 * 109.47209 * 128.61833 * 23 22 21 37 37 H 1.08994 * 109.46944 * 248.62032 * 23 22 21 38 38 H 1.09008 * 109.46699 * 8.61762 * 23 22 21 39 39 H 1.09004 * 109.47355 * 357.56962 * 24 22 21 40 40 H 1.09004 * 109.46894 * 117.56594 * 24 22 21 41 41 H 1.08994 * 109.47388 * 237.57018 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.2825 0.0329 2.3614 6 6 2.0760 1.4107 2.3867 7 6 2.3406 2.1386 3.5347 8 6 2.8055 1.5071 4.6665 9 6 3.0138 0.1151 4.6576 10 6 3.4916 -0.5401 5.8160 11 1 3.3298 -0.1020 6.7898 12 6 4.1742 -1.7563 5.7007 13 7 4.6444 -2.1349 4.5400 14 14 4.4139 -2.8390 7.2040 15 1 3.2697 -3.7775 7.3256 16 1 5.6745 -3.6110 7.0619 17 1 4.4883 -1.9890 8.4193 18 6 2.7438 -0.6198 3.4897 19 6 2.0400 -0.7213 -1.2493 20 1 1.3834 -0.6779 -2.1181 21 6 2.8569 -1.9985 -1.0435 22 6 3.5489 -0.7136 -1.5028 23 6 4.0205 -0.6462 -2.9568 24 6 4.4321 0.0147 -0.4879 25 1 -0.3633 -1.0251 0.0726 26 1 -0.3633 0.5754 0.8513 27 1 -0.3633 0.4496 -0.9241 28 1 2.1583 -1.6503 1.1790 29 1 1.7116 1.9149 1.5039 30 1 2.1812 3.2067 3.5424 31 1 3.0108 2.0790 5.5593 32 1 5.1172 -2.9781 4.4600 33 1 2.9002 -1.6883 3.4727 34 1 3.0306 -2.3252 -0.0182 35 1 2.7376 -2.7958 -1.7771 36 1 3.6462 0.2677 -3.4182 37 1 5.1100 -0.6479 -2.9858 38 1 3.6411 -1.5104 -3.5023 39 1 4.3926 -0.5067 0.4685 40 1 5.4605 0.0339 -0.8489 41 1 4.0728 1.0358 -0.3601 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397596210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:57 Heat of formation + Delta-G solvation = 24.824929 kcal Electronic energy + Delta-G solvation = -19593.752429 eV Core-core repulsion = 16859.037342 eV Total energy + Delta-G solvation = -2734.715087 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.60893 -39.04972 -36.27092 -35.04883 -32.30952 -31.32105 -29.69827 -28.75944 -28.19362 -27.08624 -24.69882 -22.93762 -22.27890 -20.68988 -19.76089 -18.97444 -17.74650 -16.74230 -16.58244 -16.03419 -15.82517 -15.26611 -14.86583 -14.53759 -14.40421 -13.98596 -13.95770 -13.68011 -13.37964 -13.26775 -13.02511 -12.91304 -12.77669 -12.72512 -12.54094 -12.40200 -12.08550 -12.04132 -11.75705 -11.45480 -11.29857 -11.11625 -10.76989 -10.53208 -10.22554 -9.21285 -8.58773 -7.82941 -6.30729 1.10537 1.37361 1.38061 1.50563 1.59730 2.23293 2.69722 2.83866 2.97897 3.67901 3.86319 3.91044 3.95645 4.23236 4.27741 4.47767 4.54357 4.63592 4.75908 4.79629 4.81638 4.86477 4.96992 5.05305 5.06350 5.09027 5.11963 5.15539 5.21328 5.22505 5.31349 5.36035 5.44398 5.52102 5.55721 5.65057 6.00448 6.14646 6.25301 6.31439 6.61991 6.98133 7.09082 7.12498 7.30105 8.40296 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.021177 B = 0.005910 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.871797 B = 4736.943553 C = 5372.168443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.179 3.821 3 H 0.071 0.929 4 N -0.743 5.743 5 C 0.231 3.769 6 C -0.300 4.300 7 C -0.064 4.064 8 C -0.288 4.288 9 C 0.109 3.891 10 C -0.504 4.504 11 H 0.068 0.932 12 C 0.037 3.963 13 N -0.822 5.822 14 Si 0.979 3.021 15 H -0.264 1.264 16 H -0.268 1.268 17 H -0.261 1.261 18 C -0.260 4.260 19 C -0.146 4.146 20 H 0.133 0.867 21 C -0.175 4.175 22 C -0.122 4.122 23 C -0.108 4.108 24 C -0.109 4.109 25 H 0.053 0.947 26 H 0.041 0.959 27 H 0.082 0.918 28 H 0.389 0.611 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.283 0.717 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.036 0.964 40 H 0.058 0.942 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.371 -0.529 -13.243 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.074 3.926 3 H 0.089 0.911 4 N -0.376 5.376 5 C 0.129 3.871 6 C -0.322 4.322 7 C -0.083 4.083 8 C -0.309 4.309 9 C 0.106 3.894 10 C -0.534 4.534 11 H 0.087 0.913 12 C -0.177 4.177 13 N -0.448 5.448 14 Si 0.800 3.200 15 H -0.188 1.188 16 H -0.193 1.193 17 H -0.185 1.185 18 C -0.284 4.284 19 C -0.165 4.165 20 H 0.150 0.850 21 C -0.212 4.212 22 C -0.122 4.122 23 C -0.165 4.165 24 C -0.166 4.166 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.226 0.774 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.129 0.871 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.289 -0.564 -13.501 13.907 hybrid contribution 0.386 -0.776 1.133 1.427 sum -2.903 -1.340 -12.368 12.775 Atomic orbital electron populations 1.22172 0.95249 1.01877 1.02040 1.20285 0.93448 0.95896 0.83018 0.91113 1.44869 1.74838 1.08628 1.09292 1.17679 0.91933 0.91182 0.86258 1.20224 1.20197 0.92475 0.99331 1.20632 0.96581 0.98298 0.92770 1.20991 1.16559 0.94446 0.98900 1.17702 0.87346 0.91394 0.92998 1.19796 1.33676 1.05743 0.94211 0.91331 1.26675 0.92551 0.98363 1.00158 1.69926 1.26751 1.21086 1.27038 0.85260 0.78500 0.77999 0.78231 1.18840 1.19262 1.18473 1.20677 1.14541 0.98962 0.94252 1.22874 0.93718 1.00735 0.99132 0.84954 1.23236 1.04492 0.91630 1.01879 1.21581 0.93387 1.00293 0.96947 1.21342 1.01192 1.02520 0.91410 1.21240 0.98492 0.99428 0.97463 0.92746 0.93995 0.89907 0.77441 0.87053 0.86715 0.89564 0.90646 0.88272 0.90513 0.87146 0.91426 0.92167 0.91340 0.94434 0.92331 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.47 71.98 0.68 -3.29 16 2 C 0.18 5.20 2.07 44.99 0.09 5.30 16 3 H 0.07 2.23 5.50 -2.39 -0.01 2.22 16 4 N -0.74 -27.46 3.56 -319.10 -1.14 -28.60 16 5 C 0.23 10.68 6.61 38.16 0.25 10.93 16 6 C -0.30 -13.30 9.22 22.59 0.21 -13.09 16 7 C -0.06 -2.96 10.02 22.20 0.22 -2.74 16 8 C -0.29 -15.14 9.79 22.75 0.22 -14.92 16 9 C 0.11 6.19 5.58 -21.31 -0.12 6.07 16 10 C -0.50 -28.71 9.06 23.46 0.21 -28.50 16 11 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16 12 C 0.04 1.94 5.18 85.25 0.44 2.38 16 13 N -0.82 -44.34 10.85 21.82 0.24 -44.11 16 14 Si 0.98 39.96 29.59 68.60 2.03 41.99 16 15 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 16 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 17 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 18 C -0.26 -14.08 8.53 22.86 0.19 -13.88 16 19 C -0.15 -3.46 5.46 -10.79 -0.06 -3.51 16 20 H 0.13 2.46 8.07 -2.39 -0.02 2.44 16 21 C -0.18 -4.37 9.01 30.59 0.28 -4.09 16 22 C -0.12 -3.02 2.70 -52.18 -0.14 -3.16 16 23 C -0.11 -2.01 9.84 71.98 0.71 -1.30 16 24 C -0.11 -3.40 8.74 71.98 0.63 -2.78 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.39 14.40 6.18 -92.71 -0.57 13.83 16 29 H 0.11 4.34 6.09 -2.91 -0.02 4.32 16 30 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 31 H 0.09 4.36 8.06 -2.91 -0.02 4.34 16 32 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 33 H 0.10 5.64 6.09 -2.91 -0.02 5.62 16 34 H 0.08 2.32 5.71 -2.38 -0.01 2.31 16 35 H 0.11 2.25 8.05 -2.39 -0.02 2.23 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.11 7.87 -2.39 -0.02 1.09 16 38 H 0.07 1.08 7.90 -2.38 -0.02 1.06 16 39 H 0.04 1.44 6.97 -2.38 -0.02 1.42 16 40 H 0.06 1.66 7.84 -2.38 -0.02 1.65 16 41 H 0.05 1.53 7.52 -2.39 -0.02 1.51 16 Total: -1.00 -61.11 325.25 5.39 -55.71 By element: Atomic # 1 Polarization: 41.15 SS G_CDS: 0.44 Total: 41.59 kcal Atomic # 6 Polarization: -70.41 SS G_CDS: 3.82 Total: -66.59 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -0.90 Total: -72.70 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -61.11 5.39 -55.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397596210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.539 kcal (2) G-P(sol) polarization free energy of solvation -61.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds