Wall clock time and date at job start Mon Mar 30 2020 06:30:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09000 * 109.47317 * 2 1
4 4 N 1.46503 * 109.46899 * 120.00208 * 2 1 3
5 5 C 1.39684 * 119.99560 * 268.42329 * 4 2 1
6 6 C 1.39341 * 119.95415 * 0.25924 * 5 4 2
7 7 C 1.38481 * 120.42539 * 180.30056 * 6 5 4
8 8 C 1.37688 * 120.32348 * 359.72257 * 7 6 5
9 9 C 1.40752 * 119.89189 * 0.02562 * 8 7 6
10 10 C 1.41406 * 120.20559 * 179.97438 * 9 8 7
11 11 H 1.08003 * 120.00300 * 24.57644 * 10 9 8
12 12 C 1.39935 * 120.00182 * 204.57718 * 10 9 8
13 13 N 1.30832 * 119.99431 * 15.93000 * 12 10 9
14 14 Si 1.86798 * 120.00130 * 195.93476 * 12 10 9
15 15 H 1.48491 * 109.47333 * 89.99984 * 14 12 10
16 16 H 1.48504 * 109.46935 * 209.99827 * 14 12 10
17 17 H 1.48497 * 109.46907 * 329.99674 * 14 12 10
18 18 C 1.38274 * 119.95136 * 180.02562 * 5 4 2
19 19 C 1.53006 * 109.46963 * 239.99794 * 2 1 3
20 20 H 1.08991 * 115.55051 * 28.68936 * 19 2 1
21 21 C 1.52998 * 117.49710 * 242.97405 * 19 2 1
22 22 C 1.52997 * 60.00311 * 252.51789 * 21 19 2
23 23 C 1.53005 * 117.49829 * 252.51606 * 22 21 19
24 24 C 1.52996 * 117.50189 * 107.49150 * 22 21 19
25 25 H 1.09003 * 109.47011 * 184.05120 * 1 2 3
26 26 H 1.08991 * 109.47074 * 304.05530 * 1 2 3
27 27 H 1.08998 * 109.46908 * 64.05868 * 1 2 3
28 28 H 0.96998 * 120.00584 * 88.43002 * 4 2 1
29 29 H 1.07995 * 119.79015 * 0.02562 * 6 5 4
30 30 H 1.07999 * 119.83780 * 179.74072 * 7 6 5
31 31 H 1.08002 * 120.05514 * 179.97438 * 8 7 6
32 32 H 0.97002 * 119.99564 * 180.02562 * 13 12 10
33 33 H 1.08004 * 120.16160 * 359.97438 * 18 5 4
34 34 H 1.09006 * 117.50155 * 0.02562 * 21 19 2
35 35 H 1.08999 * 117.49521 * 145.02292 * 21 19 2
36 36 H 1.08999 * 109.47209 * 128.61833 * 23 22 21
37 37 H 1.08994 * 109.46944 * 248.62032 * 23 22 21
38 38 H 1.09008 * 109.46699 * 8.61762 * 23 22 21
39 39 H 1.09004 * 109.47355 * 357.56962 * 24 22 21
40 40 H 1.09004 * 109.46894 * 117.56594 * 24 22 21
41 41 H 1.08994 * 109.47388 * 237.57018 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0183 -0.6907 1.1962
5 6 2.2825 0.0329 2.3614
6 6 2.0760 1.4107 2.3867
7 6 2.3406 2.1386 3.5347
8 6 2.8055 1.5071 4.6665
9 6 3.0138 0.1151 4.6576
10 6 3.4916 -0.5401 5.8160
11 1 3.3298 -0.1020 6.7898
12 6 4.1742 -1.7563 5.7007
13 7 4.6444 -2.1349 4.5400
14 14 4.4139 -2.8390 7.2040
15 1 3.2697 -3.7775 7.3256
16 1 5.6745 -3.6110 7.0619
17 1 4.4883 -1.9890 8.4193
18 6 2.7438 -0.6198 3.4897
19 6 2.0400 -0.7213 -1.2493
20 1 1.3834 -0.6779 -2.1181
21 6 2.8569 -1.9985 -1.0435
22 6 3.5489 -0.7136 -1.5028
23 6 4.0205 -0.6462 -2.9568
24 6 4.4321 0.0147 -0.4879
25 1 -0.3633 -1.0251 0.0726
26 1 -0.3633 0.5754 0.8513
27 1 -0.3633 0.4496 -0.9241
28 1 2.1583 -1.6503 1.1790
29 1 1.7116 1.9149 1.5039
30 1 2.1812 3.2067 3.5424
31 1 3.0108 2.0790 5.5593
32 1 5.1172 -2.9781 4.4600
33 1 2.9002 -1.6883 3.4727
34 1 3.0306 -2.3252 -0.0182
35 1 2.7376 -2.7958 -1.7771
36 1 3.6462 0.2677 -3.4182
37 1 5.1100 -0.6479 -2.9858
38 1 3.6411 -1.5104 -3.5023
39 1 4.3926 -0.5067 0.4685
40 1 5.4605 0.0339 -0.8489
41 1 4.0728 1.0358 -0.3601
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000397596210.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:30:57
Heat of formation + Delta-G solvation = 24.824929 kcal
Electronic energy + Delta-G solvation = -19593.752429 eV
Core-core repulsion = 16859.037342 eV
Total energy + Delta-G solvation = -2734.715087 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 259.163 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-40.60893 -39.04972 -36.27092 -35.04883 -32.30952 -31.32105 -29.69827 -28.75944
-28.19362 -27.08624 -24.69882 -22.93762 -22.27890 -20.68988 -19.76089 -18.97444
-17.74650 -16.74230 -16.58244 -16.03419 -15.82517 -15.26611 -14.86583 -14.53759
-14.40421 -13.98596 -13.95770 -13.68011 -13.37964 -13.26775 -13.02511 -12.91304
-12.77669 -12.72512 -12.54094 -12.40200 -12.08550 -12.04132 -11.75705 -11.45480
-11.29857 -11.11625 -10.76989 -10.53208 -10.22554 -9.21285 -8.58773 -7.82941
-6.30729 1.10537 1.37361 1.38061 1.50563 1.59730 2.23293 2.69722
2.83866 2.97897 3.67901 3.86319 3.91044 3.95645 4.23236 4.27741
4.47767 4.54357 4.63592 4.75908 4.79629 4.81638 4.86477 4.96992
5.05305 5.06350 5.09027 5.11963 5.15539 5.21328 5.22505 5.31349
5.36035 5.44398 5.52102 5.55721 5.65057 6.00448 6.14646 6.25301
6.31439 6.61991 6.98133 7.09082 7.12498 7.30105 8.40296
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.021177 B = 0.005910 C = 0.005211
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1321.871797 B = 4736.943553 C = 5372.168443
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.179 3.821
3 H 0.071 0.929
4 N -0.743 5.743
5 C 0.231 3.769
6 C -0.300 4.300
7 C -0.064 4.064
8 C -0.288 4.288
9 C 0.109 3.891
10 C -0.504 4.504
11 H 0.068 0.932
12 C 0.037 3.963
13 N -0.822 5.822
14 Si 0.979 3.021
15 H -0.264 1.264
16 H -0.268 1.268
17 H -0.261 1.261
18 C -0.260 4.260
19 C -0.146 4.146
20 H 0.133 0.867
21 C -0.175 4.175
22 C -0.122 4.122
23 C -0.108 4.108
24 C -0.109 4.109
25 H 0.053 0.947
26 H 0.041 0.959
27 H 0.082 0.918
28 H 0.389 0.611
29 H 0.112 0.888
30 H 0.115 0.885
31 H 0.086 0.914
32 H 0.283 0.717
33 H 0.099 0.901
34 H 0.077 0.923
35 H 0.110 0.890
36 H 0.067 0.933
37 H 0.059 0.941
38 H 0.068 0.932
39 H 0.036 0.964
40 H 0.058 0.942
41 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.371 -0.529 -13.243 13.676
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.074 3.926
3 H 0.089 0.911
4 N -0.376 5.376
5 C 0.129 3.871
6 C -0.322 4.322
7 C -0.083 4.083
8 C -0.309 4.309
9 C 0.106 3.894
10 C -0.534 4.534
11 H 0.087 0.913
12 C -0.177 4.177
13 N -0.448 5.448
14 Si 0.800 3.200
15 H -0.188 1.188
16 H -0.193 1.193
17 H -0.185 1.185
18 C -0.284 4.284
19 C -0.165 4.165
20 H 0.150 0.850
21 C -0.212 4.212
22 C -0.122 4.122
23 C -0.165 4.165
24 C -0.166 4.166
25 H 0.073 0.927
26 H 0.060 0.940
27 H 0.101 0.899
28 H 0.226 0.774
29 H 0.129 0.871
30 H 0.133 0.867
31 H 0.104 0.896
32 H 0.094 0.906
33 H 0.117 0.883
34 H 0.095 0.905
35 H 0.129 0.871
36 H 0.086 0.914
37 H 0.078 0.922
38 H 0.087 0.913
39 H 0.056 0.944
40 H 0.077 0.923
41 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -3.289 -0.564 -13.501 13.907
hybrid contribution 0.386 -0.776 1.133 1.427
sum -2.903 -1.340 -12.368 12.775
Atomic orbital electron populations
1.22172 0.95249 1.01877 1.02040 1.20285 0.93448 0.95896 0.83018
0.91113 1.44869 1.74838 1.08628 1.09292 1.17679 0.91933 0.91182
0.86258 1.20224 1.20197 0.92475 0.99331 1.20632 0.96581 0.98298
0.92770 1.20991 1.16559 0.94446 0.98900 1.17702 0.87346 0.91394
0.92998 1.19796 1.33676 1.05743 0.94211 0.91331 1.26675 0.92551
0.98363 1.00158 1.69926 1.26751 1.21086 1.27038 0.85260 0.78500
0.77999 0.78231 1.18840 1.19262 1.18473 1.20677 1.14541 0.98962
0.94252 1.22874 0.93718 1.00735 0.99132 0.84954 1.23236 1.04492
0.91630 1.01879 1.21581 0.93387 1.00293 0.96947 1.21342 1.01192
1.02520 0.91410 1.21240 0.98492 0.99428 0.97463 0.92746 0.93995
0.89907 0.77441 0.87053 0.86715 0.89564 0.90646 0.88272 0.90513
0.87146 0.91426 0.92167 0.91340 0.94434 0.92331 0.93437
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.97 9.47 71.98 0.68 -3.29 16
2 C 0.18 5.20 2.07 44.99 0.09 5.30 16
3 H 0.07 2.23 5.50 -2.39 -0.01 2.22 16
4 N -0.74 -27.46 3.56 -319.10 -1.14 -28.60 16
5 C 0.23 10.68 6.61 38.16 0.25 10.93 16
6 C -0.30 -13.30 9.22 22.59 0.21 -13.09 16
7 C -0.06 -2.96 10.02 22.20 0.22 -2.74 16
8 C -0.29 -15.14 9.79 22.75 0.22 -14.92 16
9 C 0.11 6.19 5.58 -21.31 -0.12 6.07 16
10 C -0.50 -28.71 9.06 23.46 0.21 -28.50 16
11 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16
12 C 0.04 1.94 5.18 85.25 0.44 2.38 16
13 N -0.82 -44.34 10.85 21.82 0.24 -44.11 16
14 Si 0.98 39.96 29.59 68.60 2.03 41.99 16
15 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16
16 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16
17 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16
18 C -0.26 -14.08 8.53 22.86 0.19 -13.88 16
19 C -0.15 -3.46 5.46 -10.79 -0.06 -3.51 16
20 H 0.13 2.46 8.07 -2.39 -0.02 2.44 16
21 C -0.18 -4.37 9.01 30.59 0.28 -4.09 16
22 C -0.12 -3.02 2.70 -52.18 -0.14 -3.16 16
23 C -0.11 -2.01 9.84 71.98 0.71 -1.30 16
24 C -0.11 -3.40 8.74 71.98 0.63 -2.78 16
25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16
26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16
27 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16
28 H 0.39 14.40 6.18 -92.71 -0.57 13.83 16
29 H 0.11 4.34 6.09 -2.91 -0.02 4.32 16
30 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16
31 H 0.09 4.36 8.06 -2.91 -0.02 4.34 16
32 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16
33 H 0.10 5.64 6.09 -2.91 -0.02 5.62 16
34 H 0.08 2.32 5.71 -2.38 -0.01 2.31 16
35 H 0.11 2.25 8.05 -2.39 -0.02 2.23 16
36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16
37 H 0.06 1.11 7.87 -2.39 -0.02 1.09 16
38 H 0.07 1.08 7.90 -2.38 -0.02 1.06 16
39 H 0.04 1.44 6.97 -2.38 -0.02 1.42 16
40 H 0.06 1.66 7.84 -2.38 -0.02 1.65 16
41 H 0.05 1.53 7.52 -2.39 -0.02 1.51 16
Total: -1.00 -61.11 325.25 5.39 -55.71
By element:
Atomic # 1 Polarization: 41.15 SS G_CDS: 0.44 Total: 41.59 kcal
Atomic # 6 Polarization: -70.41 SS G_CDS: 3.82 Total: -66.59 kcal
Atomic # 7 Polarization: -71.80 SS G_CDS: -0.90 Total: -72.70 kcal
Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal
Total: -61.11 5.39 -55.71 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397596210.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.539 kcal
(2) G-P(sol) polarization free energy of solvation -61.107 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.432 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.714 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.825 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds