Wall clock time and date at job start Mon Mar 30 2020 06:31:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09005 * 109.46773 * 2 1
4 4 N 1.46501 * 109.47292 * 240.00827 * 2 1 3
5 5 C 1.39690 * 120.00345 * 90.06128 * 4 2 1
6 6 C 1.39334 * 119.94927 * 359.72757 * 5 4 2
7 7 C 1.38479 * 120.42404 * 179.76308 * 6 5 4
8 8 C 1.37680 * 120.32469 * 0.51376 * 7 6 5
9 9 C 1.40755 * 119.89272 * 359.74742 * 8 7 6
10 10 C 1.41410 * 120.20584 * 179.97438 * 9 8 7
11 11 H 1.08000 * 119.99358 * 205.19277 * 10 9 8
12 12 C 1.39925 * 120.00484 * 25.19450 * 10 9 8
13 13 N 1.30832 * 119.99859 * 16.49859 * 12 10 9
14 14 Si 1.86794 * 120.00141 * 196.50313 * 12 10 9
15 15 H 1.48498 * 109.47230 * 359.97438 * 14 12 10
16 16 H 1.48503 * 109.47254 * 119.99824 * 14 12 10
17 17 H 1.48504 * 109.47246 * 239.99680 * 14 12 10
18 18 C 1.38275 * 119.94949 * 180.02562 * 5 4 2
19 19 C 1.52992 * 109.47609 * 120.00397 * 2 1 3
20 20 H 1.08998 * 115.55078 * 324.89881 * 19 2 1
21 21 C 1.53075 * 117.51534 * 110.61794 * 19 2 1
22 22 C 1.52995 * 117.50054 * 179.22765 * 19 2 1
23 23 C 1.52999 * 117.50001 * 0.02562 * 22 19 2
24 24 C 1.53008 * 117.49937 * 144.99960 * 22 19 2
25 25 H 1.09000 * 109.47710 * 55.43420 * 1 2 3
26 26 H 1.08998 * 109.47005 * 175.44298 * 1 2 3
27 27 H 1.09004 * 109.47120 * 295.43374 * 1 2 3
28 28 H 0.97003 * 119.99762 * 270.06922 * 4 2 1
29 29 H 1.08001 * 119.78770 * 359.97438 * 6 5 4
30 30 H 1.07994 * 119.83734 * 180.25782 * 7 6 5
31 31 H 1.08001 * 120.05775 * 179.76496 * 8 7 6
32 32 H 0.97001 * 119.99750 * 180.02562 * 13 12 10
33 33 H 1.07998 * 120.16755 * 359.95630 * 18 5 4
34 34 H 1.09008 * 117.51278 * 0.02562 * 21 19 2
35 35 H 1.08991 * 117.49923 * 214.96438 * 21 19 2
36 36 H 1.09008 * 109.47526 * 197.89859 * 23 22 19
37 37 H 1.09003 * 109.47086 * 317.89283 * 23 22 19
38 38 H 1.09002 * 109.47151 * 77.89840 * 23 22 19
39 39 H 1.09006 * 109.46984 * 299.91023 * 24 22 19
40 40 H 1.08998 * 109.47239 * 59.91050 * 24 22 19
41 41 H 1.09004 * 109.46760 * 179.91586 * 24 22 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 7 2.0183 -0.6904 -1.1963
5 6 2.2524 0.0283 -2.3710
6 6 2.0156 1.4009 -2.4055
7 6 2.2490 2.1239 -3.5633
8 6 2.7078 1.4917 -4.6970
9 6 2.9464 0.1046 -4.6788
10 6 3.4172 -0.5515 -5.8396
11 1 3.2235 -1.6046 -5.9807
12 6 4.1341 0.1635 -6.8055
13 7 4.6478 1.3295 -6.5087
14 14 4.3575 -0.5468 -8.5186
15 1 3.6858 -1.8688 -8.5979
16 1 3.7589 0.3739 -9.5182
17 1 5.8061 -0.7105 -8.8016
18 6 2.7128 -0.6246 -3.4996
19 6 2.0400 -0.7213 1.2491
20 1 1.4383 -0.5874 2.1480
21 6 2.7265 -2.0753 1.0530
22 6 3.5549 -0.8439 1.4249
23 6 4.4438 -0.2354 0.3385
24 6 4.1092 -0.7692 2.8491
25 1 -0.3634 0.5830 -0.8462
26 1 -0.3633 -1.0244 -0.0816
27 1 -0.3633 0.4414 0.9281
28 1 2.1790 -1.6468 -1.1726
29 1 1.6510 1.9049 -1.5226
30 1 2.0662 3.1882 -3.5782
31 1 2.8848 2.0591 -5.5987
32 1 5.1444 1.8254 -7.1783
33 1 2.8928 -1.6892 -3.4752
34 1 2.8151 -2.4521 0.0340
35 1 2.5761 -2.8320 1.8229
36 1 5.4468 -0.6559 0.4118
37 1 4.0257 -0.4622 -0.6423
38 1 4.4923 0.8454 0.4718
39 1 3.8459 0.1916 3.2915
40 1 3.6824 -1.5740 3.4478
41 1 5.1940 -0.8720 2.8226
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000397596213.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:31:00
Heat of formation + Delta-G solvation = 27.790464 kcal
Electronic energy + Delta-G solvation = -19381.415841 eV
Core-core repulsion = 16646.829349 eV
Total energy + Delta-G solvation = -2734.586492 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 259.163 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-40.70793 -39.05534 -36.37634 -34.88292 -32.29272 -31.59737 -29.63421 -28.78463
-28.09328 -27.09847 -24.74855 -22.74508 -22.51369 -20.72883 -19.70428 -19.13190
-17.47841 -17.09510 -16.46508 -16.07552 -15.83496 -15.26989 -14.87971 -14.60670
-14.41762 -14.07559 -13.90319 -13.66123 -13.32431 -13.22440 -13.01031 -12.88631
-12.83853 -12.73162 -12.68018 -12.33616 -12.09947 -12.05885 -11.79480 -11.58636
-11.19806 -11.06367 -10.77654 -10.50586 -10.16915 -9.30969 -8.58835 -7.87692
-6.31657 1.05743 1.36444 1.39244 1.53532 1.59716 2.23108 2.70186
2.82672 2.91171 3.67711 3.85659 3.90525 3.96577 4.24228 4.27771
4.49055 4.52969 4.61796 4.74771 4.77751 4.79116 4.86991 4.96859
5.05848 5.06727 5.11873 5.16763 5.17729 5.18283 5.21177 5.31507
5.33925 5.44776 5.45937 5.58557 5.63810 5.98612 6.04969 6.22778
6.34442 6.65847 6.92933 7.04092 7.08205 7.27825 8.39300
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.028951 B = 0.004791 C = 0.004565
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 966.916421 B = 5843.077525 C = 6131.524684
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.180 3.820
3 H 0.068 0.932
4 N -0.742 5.742
5 C 0.243 3.757
6 C -0.300 4.300
7 C -0.076 4.076
8 C -0.233 4.233
9 C 0.114 3.886
10 C -0.503 4.503
11 H 0.070 0.930
12 C 0.036 3.964
13 N -0.826 5.826
14 Si 0.981 3.019
15 H -0.260 1.260
16 H -0.264 1.264
17 H -0.265 1.265
18 C -0.312 4.312
19 C -0.148 4.148
20 H 0.132 0.868
21 C -0.171 4.171
22 C -0.123 4.123
23 C -0.128 4.128
24 C -0.109 4.109
25 H 0.040 0.960
26 H 0.056 0.944
27 H 0.081 0.919
28 H 0.392 0.608
29 H 0.111 0.889
30 H 0.105 0.895
31 H 0.095 0.905
32 H 0.286 0.714
33 H 0.086 0.914
34 H 0.082 0.918
35 H 0.113 0.887
36 H 0.051 0.949
37 H 0.060 0.940
38 H 0.045 0.955
39 H 0.063 0.937
40 H 0.069 0.931
41 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.313 -3.402 14.182 14.956
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.075 3.925
3 H 0.086 0.914
4 N -0.376 5.376
5 C 0.142 3.858
6 C -0.323 4.323
7 C -0.095 4.095
8 C -0.253 4.253
9 C 0.111 3.889
10 C -0.533 4.533
11 H 0.088 0.912
12 C -0.178 4.178
13 N -0.452 5.452
14 Si 0.802 3.198
15 H -0.183 1.183
16 H -0.188 1.188
17 H -0.190 1.190
18 C -0.336 4.336
19 C -0.167 4.167
20 H 0.150 0.850
21 C -0.208 4.208
22 C -0.123 4.123
23 C -0.186 4.186
24 C -0.166 4.166
25 H 0.059 0.941
26 H 0.075 0.925
27 H 0.100 0.900
28 H 0.230 0.770
29 H 0.129 0.871
30 H 0.123 0.877
31 H 0.113 0.887
32 H 0.096 0.904
33 H 0.105 0.895
34 H 0.100 0.900
35 H 0.131 0.869
36 H 0.070 0.930
37 H 0.078 0.922
38 H 0.064 0.936
39 H 0.082 0.918
40 H 0.088 0.912
41 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -3.231 -3.084 14.235 14.919
hybrid contribution 0.399 -0.400 -1.151 1.283
sum -2.832 -3.484 13.084 13.833
Atomic orbital electron populations
1.22164 0.95257 1.01988 1.02011 1.20253 0.93454 0.95835 0.83006
0.91381 1.44938 1.74712 1.09340 1.08621 1.17425 0.91643 0.91018
0.85735 1.20166 1.20379 0.92705 0.99050 1.20719 0.97395 0.98077
0.93326 1.21088 1.10238 0.95662 0.98342 1.17684 0.87050 0.92402
0.91765 1.19816 1.32484 0.97053 1.03983 0.91193 1.26733 0.92509
0.94629 1.03976 1.69928 1.25329 1.13665 1.36316 0.85189 0.78827
0.79407 0.76411 1.18316 1.18843 1.19018 1.20493 1.21158 0.98229
0.93768 1.22846 0.94846 0.99933 0.99034 0.85014 1.23230 1.03937
0.91275 1.02333 1.21562 0.92076 1.01725 0.96951 1.21478 0.98705
0.99697 0.98687 1.21322 1.00808 1.02384 0.92135 0.94072 0.92509
0.90036 0.76970 0.87088 0.87713 0.88742 0.90390 0.89548 0.89988
0.86901 0.92959 0.92150 0.93562 0.91804 0.91187 0.92296
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.82 9.50 71.98 0.68 -3.13 16
2 C 0.18 4.94 2.11 44.99 0.09 5.03 16
3 H 0.07 2.09 6.19 -2.38 -0.01 2.07 16
4 N -0.74 -25.19 2.99 -319.13 -0.95 -26.14 16
5 C 0.24 10.73 5.92 38.16 0.23 10.95 16
6 C -0.30 -13.39 9.22 22.59 0.21 -13.18 16
7 C -0.08 -3.72 10.01 22.20 0.22 -3.50 16
8 C -0.23 -12.94 8.69 22.75 0.20 -12.75 16
9 C 0.11 6.48 5.57 -21.31 -0.12 6.36 16
10 C -0.50 -28.58 9.05 23.46 0.21 -28.37 16
11 H 0.07 3.86 7.90 -2.91 -0.02 3.84 16
12 C 0.04 1.89 5.16 85.25 0.44 2.33 16
13 N -0.83 -45.21 10.92 21.82 0.24 -44.97 16
14 Si 0.98 39.84 29.59 68.60 2.03 41.87 16
15 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16
16 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16
17 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16
18 C -0.31 -15.98 9.63 22.86 0.22 -15.76 16
19 C -0.15 -3.22 5.43 -10.77 -0.06 -3.28 16
20 H 0.13 2.26 8.12 -2.39 -0.02 2.24 16
21 C -0.17 -3.67 9.14 30.62 0.28 -3.39 16
22 C -0.12 -2.82 2.70 -52.18 -0.14 -2.97 16
23 C -0.13 -3.79 9.05 71.98 0.65 -3.14 16
24 C -0.11 -1.94 9.85 71.98 0.71 -1.23 16
25 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16
26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16
27 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16
28 H 0.39 12.64 5.95 -92.71 -0.55 12.09 16
29 H 0.11 4.36 6.12 -2.91 -0.02 4.34 16
30 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16
31 H 0.09 5.52 6.15 -2.91 -0.02 5.50 16
32 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16
33 H 0.09 4.28 8.06 -2.91 -0.02 4.26 16
34 H 0.08 2.02 5.72 -2.38 -0.01 2.01 16
35 H 0.11 1.93 8.05 -2.39 -0.02 1.91 16
36 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16
37 H 0.06 2.13 4.95 -2.39 -0.01 2.12 16
38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16
39 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16
40 H 0.07 1.02 7.90 -2.39 -0.02 1.00 16
41 H 0.06 1.04 8.09 -2.38 -0.02 1.03 16
Total: -1.00 -61.50 324.25 5.60 -55.90
By element:
Atomic # 1 Polarization: 38.91 SS G_CDS: 0.46 Total: 39.37 kcal
Atomic # 6 Polarization: -69.85 SS G_CDS: 3.83 Total: -66.02 kcal
Atomic # 7 Polarization: -70.40 SS G_CDS: -0.72 Total: -71.11 kcal
Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal
Total: -61.50 5.60 -55.90 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397596213.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.688 kcal
(2) G-P(sol) polarization free energy of solvation -61.500 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.188 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.603 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.897 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.790 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds