Wall clock time and date at job start Mon Mar 30 2020 06:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47101 * 2 1 4 4 C 1.53002 * 109.47029 * 239.99607 * 2 1 3 5 5 N 1.46494 * 109.47289 * 65.00321 * 4 2 1 6 6 C 1.39682 * 120.00428 * 179.97438 * 5 4 2 7 7 C 1.39340 * 119.94656 * 359.72875 * 6 5 4 8 8 C 1.38487 * 120.41983 * 179.72258 * 7 6 5 9 9 C 1.37683 * 120.32171 * 0.54922 * 8 7 6 10 10 C 1.40749 * 119.89845 * 359.72691 * 9 8 7 11 11 C 1.41407 * 120.20803 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99604 * 204.44994 * 11 10 9 13 13 C 1.39925 * 120.00226 * 24.44318 * 11 10 9 14 14 N 1.30830 * 120.00064 * 17.89852 * 13 11 10 15 15 Si 1.86804 * 120.00236 * 197.89429 * 13 11 10 16 16 H 1.48502 * 109.47006 * 90.00483 * 15 13 11 17 17 H 1.48494 * 109.47142 * 210.00088 * 15 13 11 18 18 H 1.48498 * 109.47128 * 330.00591 * 15 13 11 19 19 C 1.38273 * 119.95568 * 179.97438 * 6 5 4 20 20 C 1.53002 * 109.46819 * 119.99968 * 2 1 3 21 21 C 1.53782 * 113.61386 * 279.13401 * 20 2 1 22 22 C 1.53947 * 87.02321 * 220.05040 * 21 20 2 23 23 C 1.53779 * 113.61361 * 181.53207 * 20 2 1 24 24 H 1.09008 * 109.47140 * 60.00498 * 1 2 3 25 25 H 1.09005 * 109.47186 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47481 * 300.00338 * 1 2 3 27 27 H 1.09000 * 109.47225 * 305.00033 * 4 2 1 28 28 H 1.09001 * 109.46977 * 185.00378 * 4 2 1 29 29 H 0.97001 * 120.00026 * 359.97438 * 5 4 2 30 30 H 1.08000 * 119.78908 * 359.97438 * 7 6 5 31 31 H 1.08000 * 119.83417 * 180.27536 * 8 7 6 32 32 H 1.08005 * 120.04888 * 179.75107 * 9 8 7 33 33 H 0.97003 * 120.00319 * 179.97438 * 14 13 11 34 34 H 1.08002 * 120.16154 * 359.97438 * 19 6 5 35 35 H 1.08997 * 112.85087 * 50.33273 * 20 2 1 36 36 H 1.09005 * 113.61603 * 334.57478 * 21 20 2 37 37 H 1.09000 * 113.61042 * 105.46674 * 21 20 2 38 38 H 1.09001 * 113.53845 * 270.81352 * 22 21 20 39 39 H 1.08999 * 113.74254 * 139.94341 * 22 21 20 40 40 H 1.09004 * 113.61188 * 254.53164 * 23 20 2 41 41 H 1.09001 * 113.61505 * 25.42889 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0352 -2.4424 6 6 2.0090 -0.4296 -3.7104 7 6 2.7381 -1.6101 -3.8390 8 6 3.0918 -2.0829 -5.0917 9 6 2.7362 -1.3849 -6.2240 10 6 2.0046 -0.1880 -6.1095 11 6 1.6355 0.5338 -7.2681 12 1 1.4425 1.5946 -7.2048 13 6 1.5203 -0.1262 -8.4965 14 7 1.4046 -1.4289 -8.5309 15 14 1.5315 0.8527 -10.0875 16 1 2.9277 0.9901 -10.5743 17 1 0.7184 0.1458 -11.1094 18 1 0.9575 2.2004 -9.8436 19 6 1.6423 0.2850 -4.8360 20 6 2.0399 -0.7213 1.2493 21 6 2.0343 0.1559 2.5124 22 6 3.3854 -0.4899 2.8695 23 6 3.5732 -0.7443 1.3645 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6054 -1.7199 -1.2951 28 1 3.1263 -0.7996 -1.2055 29 1 1.1484 0.8589 -2.3518 30 1 3.0257 -2.1619 -2.9563 31 1 3.6532 -3.0012 -5.1805 32 1 3.0178 -1.7556 -7.1985 33 1 1.3244 -1.8865 -9.3824 34 1 1.0802 1.2019 -4.7373 35 1 1.5765 -1.6972 1.3934 36 1 2.1024 1.2235 2.3030 37 1 1.2340 -0.0893 3.2106 38 1 3.2898 -1.4024 3.4580 39 1 4.1093 0.2096 3.2877 40 1 4.0136 -1.7152 1.1374 41 1 4.0629 0.0766 0.8407 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398850622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:02 Heat of formation + Delta-G solvation = 18.362155 kcal Electronic energy + Delta-G solvation = -18667.032078 eV Core-core repulsion = 15932.036744 eV Total energy + Delta-G solvation = -2734.995334 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.44247 -37.71111 -35.48394 -33.53267 -31.91911 -29.70288 -27.87904 -26.39000 -25.42820 -25.13634 -24.17198 -21.10330 -20.44710 -19.77196 -19.50334 -17.28536 -15.76456 -15.54294 -15.20208 -15.07057 -14.51715 -14.35281 -13.98441 -13.14272 -12.83232 -12.70756 -12.56902 -12.51288 -12.31948 -12.04244 -11.90962 -11.52145 -11.33172 -11.09352 -10.92222 -10.86455 -10.61816 -10.46600 -10.38372 -10.12639 -10.08675 -9.69018 -9.26017 -9.14929 -8.65348 -7.33385 -6.66666 -6.13490 -4.26444 2.89560 3.12417 3.16078 3.27576 3.42929 4.00155 4.22048 4.49113 4.53382 4.68013 4.75046 4.76822 5.06780 5.24384 5.34386 5.47865 5.60470 5.64339 5.71887 5.75045 5.84857 5.86447 5.90756 5.96145 6.10901 6.17008 6.27897 6.29652 6.38568 6.50545 6.61203 7.08753 7.12929 7.16540 7.39962 7.46541 7.85277 7.97402 8.19644 8.30771 8.56939 8.71591 8.84585 9.05014 9.17848 10.29464 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.045224 B = 0.003561 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.997346 B = 7861.768207 C = 8153.136586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.072 0.928 4 C 0.143 3.857 5 N -0.762 5.762 6 C 0.225 3.775 7 C -0.301 4.301 8 C -0.075 4.075 9 C -0.200 4.200 10 C 0.142 3.858 11 C -0.466 4.466 12 H 0.075 0.925 13 C 0.078 3.922 14 N -0.793 5.793 15 Si 0.906 3.094 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.263 1.263 19 C -0.291 4.291 20 C -0.101 4.101 21 C -0.135 4.135 22 C -0.144 4.144 23 C -0.138 4.138 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.386 0.614 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.278 0.722 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.909 1.440 15.886 15.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.090 0.910 4 C 0.018 3.982 5 N -0.396 5.396 6 C 0.126 3.874 7 C -0.324 4.324 8 C -0.094 4.094 9 C -0.221 4.221 10 C 0.138 3.862 11 C -0.496 4.496 12 H 0.093 0.907 13 C -0.140 4.140 14 N -0.418 5.418 15 Si 0.731 3.269 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.187 1.187 19 C -0.315 4.315 20 C -0.120 4.120 21 C -0.173 4.173 22 C -0.182 4.182 23 C -0.175 4.175 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.219 0.781 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.946 1.086 15.829 15.894 hybrid contribution -0.265 0.578 -0.732 0.970 sum 0.681 1.664 15.097 15.203 Atomic orbital electron populations 1.21785 0.94958 1.01980 1.01406 1.21347 0.96125 0.99625 0.93991 0.90967 1.21046 0.98511 0.94798 0.83866 1.44454 1.64500 1.27965 1.02702 1.17476 0.93387 0.92937 0.83569 1.19864 1.15614 1.00761 0.96197 1.20439 0.98632 0.97496 0.92874 1.21167 1.04869 0.99022 0.97006 1.17331 0.86819 0.90871 0.91130 1.19551 1.41760 0.96264 0.91992 0.90682 1.25885 0.92284 0.94834 1.00980 1.69868 1.34861 1.09093 1.27989 0.86362 0.79076 0.80704 0.80807 1.19349 1.20435 1.18725 1.20393 1.15056 1.04298 0.91713 1.22518 0.96137 0.99289 0.94049 1.22966 0.97420 0.99452 0.97414 1.22845 0.97684 1.00762 0.96864 1.22944 0.96279 1.02274 0.96043 0.92378 0.92680 0.93017 0.93504 0.93260 0.78073 0.89757 0.89733 0.86819 0.91091 0.89423 0.89260 0.90222 0.91795 0.90458 0.91716 0.91473 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.05 37.16 0.34 -1.28 16 2 C -0.09 -1.07 2.15 -90.62 -0.19 -1.26 16 3 H 0.07 0.85 7.98 -51.93 -0.41 0.43 16 4 C 0.14 2.17 4.19 -4.04 -0.02 2.15 16 5 N -0.76 -13.99 5.46 -58.69 -0.32 -14.31 16 6 C 0.22 5.21 6.64 -83.86 -0.56 4.65 16 7 C -0.30 -7.08 9.32 -39.08 -0.36 -7.45 16 8 C -0.08 -1.86 10.02 -39.69 -0.40 -2.26 16 9 C -0.20 -5.45 8.70 -38.84 -0.34 -5.79 16 10 C 0.14 3.93 5.57 -106.85 -0.60 3.33 16 11 C -0.47 -12.81 9.05 -37.74 -0.34 -13.15 16 12 H 0.08 1.99 7.91 -52.48 -0.42 1.58 16 13 C 0.08 2.01 5.14 -17.35 -0.09 1.92 16 14 N -0.79 -21.17 10.96 55.55 0.61 -20.56 16 15 Si 0.91 19.18 29.60 -169.99 -5.03 14.15 16 16 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 17 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 19 C -0.29 -7.42 9.63 -38.68 -0.37 -7.80 16 20 C -0.10 -1.01 3.11 -89.81 -0.28 -1.29 16 21 C -0.14 -1.17 7.63 -25.83 -0.20 -1.37 16 22 C -0.14 -1.21 8.09 -25.83 -0.21 -1.42 16 23 C -0.14 -1.36 6.66 -25.92 -0.17 -1.53 16 24 H 0.06 0.71 7.18 -51.92 -0.37 0.34 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.75 7.95 -51.93 -0.41 0.34 16 28 H 0.05 0.77 7.12 -51.93 -0.37 0.40 16 29 H 0.39 6.50 7.66 -40.82 -0.31 6.19 16 30 H 0.08 1.80 6.70 -52.49 -0.35 1.45 16 31 H 0.08 1.88 8.06 -52.49 -0.42 1.45 16 32 H 0.11 3.18 6.15 -52.48 -0.32 2.86 16 33 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 34 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.69 7.99 -51.93 -0.41 0.27 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 LS Contribution 328.42 15.07 4.95 4.95 Total: -1.00 -28.43 328.42 -10.33 -38.76 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -6.75 Total: 9.54 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: -3.79 Total: -32.53 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.29 Total: -34.87 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.43 -10.33 -38.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398850622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.126 kcal (2) G-P(sol) polarization free energy of solvation -28.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds