Wall clock time and date at job start Mon Mar 30 2020 06:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47101 * 2 1 4 4 C 1.53002 * 109.47029 * 239.99607 * 2 1 3 5 5 N 1.46494 * 109.47289 * 65.00321 * 4 2 1 6 6 C 1.39682 * 120.00428 * 179.97438 * 5 4 2 7 7 C 1.39340 * 119.94656 * 359.72875 * 6 5 4 8 8 C 1.38487 * 120.41983 * 179.72258 * 7 6 5 9 9 C 1.37683 * 120.32171 * 0.54922 * 8 7 6 10 10 C 1.40749 * 119.89845 * 359.72691 * 9 8 7 11 11 C 1.41407 * 120.20803 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99604 * 204.44994 * 11 10 9 13 13 C 1.39925 * 120.00226 * 24.44318 * 11 10 9 14 14 N 1.30830 * 120.00064 * 17.89852 * 13 11 10 15 15 Si 1.86804 * 120.00236 * 197.89429 * 13 11 10 16 16 H 1.48502 * 109.47006 * 90.00483 * 15 13 11 17 17 H 1.48494 * 109.47142 * 210.00088 * 15 13 11 18 18 H 1.48498 * 109.47128 * 330.00591 * 15 13 11 19 19 C 1.38273 * 119.95568 * 179.97438 * 6 5 4 20 20 C 1.53002 * 109.46819 * 119.99968 * 2 1 3 21 21 C 1.53782 * 113.61386 * 279.13401 * 20 2 1 22 22 C 1.53947 * 87.02321 * 220.05040 * 21 20 2 23 23 C 1.53779 * 113.61361 * 181.53207 * 20 2 1 24 24 H 1.09008 * 109.47140 * 60.00498 * 1 2 3 25 25 H 1.09005 * 109.47186 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47481 * 300.00338 * 1 2 3 27 27 H 1.09000 * 109.47225 * 305.00033 * 4 2 1 28 28 H 1.09001 * 109.46977 * 185.00378 * 4 2 1 29 29 H 0.97001 * 120.00026 * 359.97438 * 5 4 2 30 30 H 1.08000 * 119.78908 * 359.97438 * 7 6 5 31 31 H 1.08000 * 119.83417 * 180.27536 * 8 7 6 32 32 H 1.08005 * 120.04888 * 179.75107 * 9 8 7 33 33 H 0.97003 * 120.00319 * 179.97438 * 14 13 11 34 34 H 1.08002 * 120.16154 * 359.97438 * 19 6 5 35 35 H 1.08997 * 112.85087 * 50.33273 * 20 2 1 36 36 H 1.09005 * 113.61603 * 334.57478 * 21 20 2 37 37 H 1.09000 * 113.61042 * 105.46674 * 21 20 2 38 38 H 1.09001 * 113.53845 * 270.81352 * 22 21 20 39 39 H 1.08999 * 113.74254 * 139.94341 * 22 21 20 40 40 H 1.09004 * 113.61188 * 254.53164 * 23 20 2 41 41 H 1.09001 * 113.61505 * 25.42889 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0352 -2.4424 6 6 2.0090 -0.4296 -3.7104 7 6 2.7381 -1.6101 -3.8390 8 6 3.0918 -2.0829 -5.0917 9 6 2.7362 -1.3849 -6.2240 10 6 2.0046 -0.1880 -6.1095 11 6 1.6355 0.5338 -7.2681 12 1 1.4425 1.5946 -7.2048 13 6 1.5203 -0.1262 -8.4965 14 7 1.4046 -1.4289 -8.5309 15 14 1.5315 0.8527 -10.0875 16 1 2.9277 0.9901 -10.5743 17 1 0.7184 0.1458 -11.1094 18 1 0.9575 2.2004 -9.8436 19 6 1.6423 0.2850 -4.8360 20 6 2.0399 -0.7213 1.2493 21 6 2.0343 0.1559 2.5124 22 6 3.3854 -0.4899 2.8695 23 6 3.5732 -0.7443 1.3645 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6054 -1.7199 -1.2951 28 1 3.1263 -0.7996 -1.2055 29 1 1.1484 0.8589 -2.3518 30 1 3.0257 -2.1619 -2.9563 31 1 3.6532 -3.0012 -5.1805 32 1 3.0178 -1.7556 -7.1985 33 1 1.3244 -1.8865 -9.3824 34 1 1.0802 1.2019 -4.7373 35 1 1.5765 -1.6972 1.3934 36 1 2.1024 1.2235 2.3030 37 1 1.2340 -0.0893 3.2106 38 1 3.2898 -1.4024 3.4580 39 1 4.1093 0.2096 3.2877 40 1 4.0136 -1.7152 1.1374 41 1 4.0629 0.0766 0.8407 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398850622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:01 Heat of formation + Delta-G solvation = 4.958961 kcal Electronic energy + Delta-G solvation = -18667.613284 eV Core-core repulsion = 15932.036744 eV Total energy + Delta-G solvation = -2735.576540 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.35705 -39.44364 -36.97853 -35.26757 -33.35478 -31.68063 -29.49114 -27.46595 -27.07675 -26.16740 -25.37033 -22.78573 -22.11091 -21.18170 -20.30109 -19.15251 -17.37038 -17.03507 -16.42363 -16.29748 -16.12946 -15.60242 -15.43057 -14.67068 -14.49145 -14.08839 -13.89457 -13.65810 -13.42723 -13.28865 -13.23077 -12.85378 -12.79118 -12.68542 -12.48601 -12.14434 -11.98210 -11.77418 -11.67274 -11.33591 -11.19907 -11.05983 -10.95021 -10.86211 -10.43245 -9.34139 -8.60732 -7.92680 -6.32671 1.04707 1.34739 1.39310 1.52525 1.60147 2.22981 2.80107 2.81917 3.64626 3.75355 3.84567 3.86352 4.00599 4.14446 4.36828 4.39948 4.50293 4.59954 4.71907 4.78928 4.85224 4.92473 4.92694 4.97024 5.05605 5.12355 5.13013 5.15302 5.16890 5.22865 5.28704 5.35161 5.42316 5.48243 5.61040 5.69525 5.95391 6.02927 6.20327 6.31273 6.63140 6.89883 7.02401 7.06319 7.26060 8.37742 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.045224 B = 0.003561 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.997346 B = 7861.768207 C = 8153.136586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 H 0.074 0.926 4 C 0.141 3.859 5 N -0.752 5.752 6 C 0.233 3.767 7 C -0.305 4.305 8 C -0.075 4.075 9 C -0.233 4.233 10 C 0.113 3.887 11 C -0.504 4.504 12 H 0.072 0.928 13 C 0.036 3.964 14 N -0.824 5.824 15 Si 0.983 3.017 16 H -0.262 1.262 17 H -0.267 1.267 18 H -0.259 1.259 19 C -0.314 4.314 20 C -0.101 4.101 21 C -0.129 4.129 22 C -0.138 4.138 23 C -0.145 4.145 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.394 0.606 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.287 0.713 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 1.779 17.342 17.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.100 4.100 3 H 0.093 0.907 4 C 0.017 3.983 5 N -0.384 5.384 6 C 0.131 3.869 7 C -0.328 4.328 8 C -0.094 4.094 9 C -0.254 4.254 10 C 0.111 3.889 11 C -0.533 4.533 12 H 0.090 0.910 13 C -0.179 4.179 14 N -0.450 5.450 15 Si 0.804 3.196 16 H -0.187 1.187 17 H -0.191 1.191 18 H -0.183 1.183 19 C -0.338 4.338 20 C -0.120 4.120 21 C -0.167 4.167 22 C -0.176 4.176 23 C -0.182 4.182 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.229 0.771 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.863 1.429 17.340 17.420 hybrid contribution -0.239 0.423 -1.036 1.144 sum 0.624 1.851 16.304 16.421 Atomic orbital electron populations 1.21772 0.94509 1.01914 1.01758 1.21271 0.96367 0.99445 0.92936 0.90730 1.21227 0.98483 0.94653 0.83936 1.44541 1.63547 1.28284 1.02062 1.17559 0.92075 0.92347 0.84879 1.20151 1.15156 1.00940 0.96591 1.20728 0.98048 0.97934 0.92703 1.21106 1.07032 1.00093 0.97141 1.17699 0.87400 0.91546 0.92302 1.19813 1.43750 0.96369 0.93408 0.90978 1.26778 0.91118 0.95847 1.04183 1.69923 1.34953 1.10679 1.29411 0.85198 0.79389 0.79048 0.75973 1.18673 1.19125 1.18252 1.20517 1.16164 1.05034 0.92084 1.22529 0.96138 0.99611 0.93750 1.22945 0.97902 0.99254 0.96578 1.22835 0.97634 1.01278 0.95818 1.22971 0.96051 1.01859 0.97327 0.93647 0.92955 0.91063 0.94045 0.93423 0.77131 0.87281 0.87447 0.88543 0.90253 0.89199 0.88971 0.90073 0.90742 0.89592 0.91108 0.91772 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.05 71.98 0.65 -2.26 16 2 C -0.08 -1.72 2.15 -10.79 -0.02 -1.75 16 3 H 0.07 1.58 7.98 -2.39 -0.02 1.56 16 4 C 0.14 4.05 4.19 86.38 0.36 4.41 16 5 N -0.75 -26.81 5.46 -339.59 -1.85 -28.66 16 6 C 0.23 10.73 6.64 38.16 0.25 10.99 16 7 C -0.31 -14.12 9.32 22.59 0.21 -13.91 16 8 C -0.08 -3.73 10.02 22.20 0.22 -3.51 16 9 C -0.23 -13.09 8.70 22.75 0.20 -12.89 16 10 C 0.11 6.52 5.57 -21.31 -0.12 6.40 16 11 C -0.50 -28.65 9.05 23.46 0.21 -28.44 16 12 H 0.07 3.97 7.91 -2.91 -0.02 3.94 16 13 C 0.04 1.88 5.14 85.25 0.44 2.31 16 14 N -0.82 -45.04 10.96 21.82 0.24 -44.80 16 15 Si 0.98 39.66 29.60 68.60 2.03 41.69 16 16 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 17 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 18 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 19 C -0.31 -16.38 9.63 22.85 0.22 -16.16 16 20 C -0.10 -1.78 3.11 -10.27 -0.03 -1.81 16 21 C -0.13 -1.87 7.63 31.18 0.24 -1.63 16 22 C -0.14 -1.96 8.09 31.18 0.25 -1.71 16 23 C -0.14 -2.56 6.66 31.12 0.21 -2.35 16 24 H 0.04 1.04 7.18 -2.38 -0.02 1.02 16 25 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.04 1.26 7.95 -2.39 -0.02 1.24 16 28 H 0.05 1.41 7.12 -2.39 -0.02 1.39 16 29 H 0.39 12.88 7.66 -92.71 -0.71 12.17 16 30 H 0.11 4.44 6.70 -2.91 -0.02 4.42 16 31 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 32 H 0.10 5.64 6.15 -2.91 -0.02 5.62 16 33 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 34 H 0.09 4.49 8.06 -2.91 -0.02 4.47 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 1.17 7.99 -2.38 -0.02 1.15 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 Total: -1.00 -62.18 328.42 3.99 -58.19 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: 0.29 Total: 35.89 kcal Atomic # 6 Polarization: -65.60 SS G_CDS: 3.29 Total: -62.31 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -1.61 Total: -73.46 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -62.18 3.99 -58.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398850622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.145 kcal (2) G-P(sol) polarization free energy of solvation -62.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds